Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025139

Physical Location & Seq

Genomic Coordinates Reverse (-)

19965130 .. 19967988

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTGTCGTGGCAGAGGACTGCTTTCCATTTTCAGCCGGAGAAGAACTGGATGAATGGTATGCATATGGTGCACTTCATGCTGTGCCTGGGACTGGAATGTGTCGACTTCTATCCGGTGTCGAAAACTAGTGACAAGGGGTTGGACACTTCTCAGAATGGGGCTGATGTGAAGCATGTGGTCAAGGCTAGTCTTGATAATGACAGGCATGATTACCATGCATTGGGGTCTTATAATGATCGAGAAGACTGGAAAATTCCTGATAATCAAAAGATTGATGTTGGGATTGGGATTAGGTATGATTACGGAAAGTTCTATGCTTCCAAGACCTTCTATGATCAGAACAAGCAGAGAAGGTTGGACATTGTCGCTGAGTTTGAGTTGGATCAGAAGGTTATAGAGAGCGCAGCCGAATCCAACAAGGAGTTCAGTTGCCAAACTAGCGGTGGAGCTGCCAAACTTGGAGCATTGGGACCCTTTGGTCTAGTTGTTCTTGCAGATGACTGCCTCTCTGAGCGCACTGATCCTGTCTACTTTTATGTTGTCAAAGGATCTGGTGGTACTGTCAATACCTACTTCTGTGCTGATCAAATAAGTTATGTTCCAGCACTGAAAGGTGAAAAGCTATCTGTGAGAATTCTGGTTGATCATTCAATAATTGAAAGCTTTGCTCAAGGTGGACGAACAACGATAACAACGCGCGTTTACCCAACTCAGGCAATTTATGGAGCTGCAAGGCTCTTTTTGTTCAACAATGCTACTGACACCAGTTGTTACTGCCTCACTCCAGATATGGCAGATGAACTCTGCATTCATACGCCCATTCTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016787 GO:0016798 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071944 GO:0080022 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

DUF3357 Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

277

Amino Acids

31.04

Weight (kDa)

5.47

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_32N	PF00251	32 - 120	6.3e-11	Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C	PF08244	121 - 254	4.8e-16	Glycosyl hydrolases family 32 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025139)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0202321
rosa_samantha	Rh7AG197100 Rh7CG208200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AasI	GACNNNNNNGTC	1 cut(s)	480
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccI	GTMKAC	2 cut(s)	105, 531
AccII	CGCG	2 cut(s)	700, 702
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	3 cut(s)	393, 518, 559
AcsI	RAATTY	2 cut(s)	255, 636
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	3 cut(s)	94, 223, 715
AgsI	TTSAA	3 cut(s)	654, 662, 751
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	452, 625, 666, 731
AluI	AGCT	4 cut(s)	452, 625, 666, 731
Alw21I	GWGCWC	1 cut(s)	75
Alw44I	GTGCAC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	393, 518, 559
ApaLI	GTGCAC	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	407, 452, 731
ApoI	RAATTY	2 cut(s)	255, 636
AspLEI	GCGC	3 cut(s)	407, 519, 702
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	629, 820
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	419, 439, 718
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	3 cut(s)	337, 586, 646
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	4 cut(s)	129, 189, 441, 485
BisI	GCNGC	3 cut(s)	408, 453, 732
BlsI	GCNGC	3 cut(s)	409, 454, 733
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	474, 475
BmrFI	CCNGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 223, 715
Bse1I	ACTGG	4 cut(s)	53, 99, 254, 768
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	94, 223, 715
BseMII	CTCAG	4 cut(s)	167, 363, 504, 728
BseNI	ACTGG	4 cut(s)	53, 99, 254, 768
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	419, 439, 718
Bsh1236I	CGCG	2 cut(s)	700, 702
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	38, 116
BslFI	GGGAC	2 cut(s)	105, 486
BslI	CCNNNNNNNGG	3 cut(s)	94, 223, 715
BsmFI	GGGAC	2 cut(s)	105, 486
BsmI	GAATGC	1 cut(s)	810
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	7 cut(s)	238, 337, 385, 523, 551, 586, 646
BspACI	CCGC	1 cut(s)	444
BspCNI	CTCAG	4 cut(s)	166, 364, 505, 727
BspFNI	CGCG	2 cut(s)	700, 702
BspLI	GGNNCC	2 cut(s)	474, 475
BspPI	GGATC	3 cut(s)	393, 518, 559
BsrI	ACTGG	4 cut(s)	53, 99, 254, 768
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	7 cut(s)	238, 337, 385, 523, 551, 586, 646
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	565
BstAPI	GCANNNNNTGC	2 cut(s)	70, 79
BstDEI	CTNAG	4 cut(s)	153, 372, 513, 714
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	2 cut(s)	700, 702
BstHHI	GCGC	3 cut(s)	407, 519, 702
BstKTI	GATC	7 cut(s)	241, 340, 388, 526, 554, 589, 649
BstMBI	GATC	7 cut(s)	238, 337, 385, 523, 551, 586, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 79, 441
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	75
BstUI	CGCG	2 cut(s)	700, 702
BstV1I	GCAGC	3 cut(s)	419, 439, 718
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	519, 608
CfoI	GCGC	3 cut(s)	407, 519, 702
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	4 cut(s)	79, 176, 209, 218
CviJI	RGCY	9 cut(s)	37, 164, 188, 410, 452, 625, 666, 731, 739
CviKI_1	RGCY	9 cut(s)	37, 164, 188, 410, 452, 625, 666, 731, 739
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	4 cut(s)	153, 372, 513, 714
DpnI	GATC	7 cut(s)	240, 339, 387, 525, 553, 588, 648
DpnII	GATC	7 cut(s)	238, 337, 385, 523, 551, 586, 646
DrdI	GACNNNNNNGTC	1 cut(s)	480
DseDI	GACNNNNNNGTC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	87
EcoT22I	ATGCAT	2 cut(s)	66, 223
FaeI	CATG	4 cut(s)	82, 179, 212, 221
FaqI	GGGAC	2 cut(s)	105, 486
FatI	CATG	4 cut(s)	78, 175, 208, 217
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	3 cut(s)	337, 586, 646
FblI	GTMKAC	2 cut(s)	105, 531
Fnu4HI	GCNGC	3 cut(s)	408, 453, 732
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	3 cut(s)	408, 453, 732
FspBI	CTAG	4 cut(s)	129, 189, 441, 485
GlaI	GCGC	3 cut(s)	406, 518, 701
GluI	GCNGC	3 cut(s)	408, 453, 732
GsuI	CTGGAG	1 cut(s)	771
HapII	CCGG	2 cut(s)	38, 116
HhaI	GCGC	3 cut(s)	407, 519, 702
Hin1II	CATG	4 cut(s)	82, 179, 212, 221
Hin6I	GCGC	3 cut(s)	405, 517, 700
HinP1I	GCGC	3 cut(s)	405, 517, 700
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	2 cut(s)	38, 116
HphI	GGTGA	2 cut(s)	629, 820
Hpy166II	GTNNAC	5 cut(s)	73, 106, 532, 680, 706
Hpy188I	TCNGA	4 cut(s)	156, 342, 390, 514
Hpy188III	TCNNGA	4 cut(s)	194, 242, 260, 788
Hpy8I	GTNNAC	5 cut(s)	73, 106, 532, 680, 706
HpyAV	CCTTC	3 cut(s)	340, 348, 385
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4V	TGCA	6 cut(s)	64, 73, 221, 497, 734, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 79, 441
HpyF3I	CTNAG	4 cut(s)	153, 372, 513, 714
Hsp92II	CATG	4 cut(s)	82, 179, 212, 221
HspAI	GCGC	3 cut(s)	405, 517, 700
KflI	GGGWCCC	1 cut(s)	473
Ksp22I	TGATCA	3 cut(s)	337, 586, 646
Kzo9I	GATC	7 cut(s)	238, 337, 385, 523, 551, 586, 646
LmnI	GCTCC	3 cut(s)	449, 464, 728
Lsp1109I	GCAGC	3 cut(s)	419, 439, 718
MaeI	CTAG	4 cut(s)	129, 189, 441, 485
MaeIII	GTNAC	2 cut(s)	131, 773
MalI	GATC	7 cut(s)	240, 339, 387, 525, 553, 588, 648
MboI	GATC	7 cut(s)	238, 337, 385, 523, 551, 586, 646
MboII	GAAGA	2 cut(s)	55, 257
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	4 cut(s)	255, 636, 657, 720
MmeI	TCCRAC	4 cut(s)	123, 339, 363, 441
MnlI	CCTC	3 cut(s)	9, 518, 791
Mph1103I	ATGCAT	2 cut(s)	66, 223
MspI	CCGG	2 cut(s)	38, 116
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	2 cut(s)	700, 702
MwoI	GCNNNNNNNGC	3 cut(s)	70, 79, 441
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	7 cut(s)	238, 337, 385, 523, 551, 586, 646
NlaIII	CATG	4 cut(s)	82, 179, 212, 221
NlaIV	GGNNCC	2 cut(s)	474, 475
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	2 cut(s)	66, 223
NspI	RCATGY	1 cut(s)	179
PctI	GAATGC	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	409, 454, 733
PpuMI	RGGWCCY	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	474, 475
PspPI	GGNCC	1 cut(s)	473
PspPPI	RGGWCCY	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	551
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SalI	GTCGAC	1 cut(s)	104
SatI	GCNGC	3 cut(s)	408, 453, 732
Sau3AI	GATC	7 cut(s)	238, 337, 385, 523, 551, 586, 646
Sau96I	GGNCC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	75
SinI	GGWCC	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	4 cut(s)	255, 636, 657, 720
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	4 cut(s)	129, 189, 441, 485
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	3 cut(s)	105, 122, 241
TasI	AATT	4 cut(s)	255, 636, 657, 720
TfiI	GAWTC	1 cut(s)	413
TscAI	CASTG	2 cut(s)	526, 615
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	3 cut(s)	407, 452, 731
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	4 cut(s)	67, 68, 803, 816
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	526, 615
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	223
VneI	GTGCAC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	2 cut(s)	255, 636
XceI	RCATGY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XmiI	GTMKAC	2 cut(s)	105, 531
XspI	CTAG	4 cut(s)	129, 189, 441, 485
Zsp2I	ATGCAT	2 cut(s)	66, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.