Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0025139

Physical Location & Seq

Genomic Coordinates Reverse (-)

18649422 .. 18651230

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG208200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTGCACTTCATGCTGTGCCTGGGACTGGAATGTGTCGACTTCTATCCGGTGTCGAAAACTAGTGACAAGGGTTTGGACACTTCTCAGAATGGGGCTGATATGAAGCATGTGGTCAAGGCTAGTCTTGATAATGACAGGCATGATTACTATGCATTGGGGTCTTATAATGAGAAGACTGGAAAATGGCTTCCTGATAATCAAAAGATTGATGTTGGGATTGGGATTAGGTATGATTATGGAAAGTTCTATGCTTCCAAGACCTTCTATGATCAGAACAAGCAGAGAAGGGTGTTGTGGGGTTGGATTGGAGAGTCTGATAGTGAGTATGCTGATTTCAAGAAGGGTTGGGCATCTCTTCAGGGAATTCCAAGAACAGTGTTGTTTGATCAAAAGACTGGTAGCAATCTACTTCAATGGCCAGTGGAGGAGATCGAGAAATTGAGATTGAAAAATAAGACTTTGGACAAGTTGGACATTGTCGCTGAGTTTGAGTTGGATCAGAAGGTTATAGAGAGCGCAGCTGAATCCAACGAGGAGTTCAGTTGCCAAACTAGCGGTGGAGCTGCCAAACTCGGAGCATTGGGACCCTTTGGTCTTGTTGTTCTTGCAGATGACTGCCTCTCTGAGCGCACTCCTGTCTACTTTTATGTTGTCAAAGGATCTGGTGGCACTGTCAATACCTACTTCTGTGCTGATCAAATAAGTTATGTTCCAGTACTGAAAGGTGAAAAGCTATCTGTGAGAATTCTGGTTGATCATTCAATAATTGAAAGCTTTGCTCAAGGTGGACGAACAACGATAACAACGCGCGTTTACCCAACTCAGGCAATTTATGGAGCTGCAAGGCTCTTTTTGTTCAACAATGCTACTGACACCAGTTGTTACTGCCTCACTCCAGATATGGCAGATGAACTCTGCATTCATACGCCCATTCTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016787 GO:0016798 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071944 GO:0080022 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

DUF3357 Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

314

Amino Acids

35.1

Weight (kDa)

5.25

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_32N	PF00251	10 - 141	8.7e-28	Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C	PF08244	144 - 291	1.2e-18	Glycosyl hydrolases family 32 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025139)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0202321
rosa_samantha	Rh7AG197100 Rh7CG208200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AasI	GACNNNNNNGTC	1 cut(s)	594
AccI	GTMKAC	2 cut(s)	39, 642
AccII	CGCG	2 cut(s)	811, 813
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	2 cut(s)	507, 670
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	2 cut(s)	366, 747
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	28, 826
AgsI	TTSAA	6 cut(s)	340, 416, 451, 765, 773, 862
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	5 cut(s)	524, 566, 736, 777, 842
AluI	AGCT	5 cut(s)	524, 566, 736, 777, 842
Alw21I	GWGCWC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	2 cut(s)	507, 670
AoxI	GGCC	1 cut(s)	419
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	3 cut(s)	521, 566, 842
ApoI	RAATTY	2 cut(s)	366, 747
AspLEI	GCGC	3 cut(s)	521, 633, 813
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	740, 931
AvaII	GGWCC	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	533, 553, 829
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	4 cut(s)	271, 388, 697, 757
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	3 cut(s)	63, 123, 555
BisI	GCNGC	3 cut(s)	522, 567, 843
BlsI	GCNGC	3 cut(s)	523, 568, 844
BmcAI	AGTACT	1 cut(s)	720
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	2 cut(s)	588, 589
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	882
BpuEI	CTTGAG	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 826
Bse1I	ACTGG	6 cut(s)	33, 184, 403, 422, 716, 879
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	28, 826
BseMII	CTCAG	4 cut(s)	101, 477, 618, 839
BseNI	ACTGG	6 cut(s)	33, 184, 403, 422, 716, 879
BseRI	GAGGAG	2 cut(s)	443, 551
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	533, 553, 829
Bsh1236I	CGCG	2 cut(s)	811, 813
BshFI	GGCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	39, 600
BslI	CCNNNNNNNGG	2 cut(s)	28, 826
BsmFI	GGGAC	2 cut(s)	39, 600
BsmI	GAATGC	1 cut(s)	921
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	7 cut(s)	271, 388, 432, 499, 662, 697, 757
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	4 cut(s)	100, 478, 619, 838
BspFNI	CGCG	2 cut(s)	811, 813
BspLI	GGNNCC	2 cut(s)	588, 589
BspPI	GGATC	2 cut(s)	507, 670
BsrI	ACTGG	6 cut(s)	33, 184, 403, 422, 716, 879
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	7 cut(s)	271, 388, 432, 499, 662, 697, 757
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	379, 676
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstDEI	CTNAG	4 cut(s)	87, 486, 627, 825
BstFNI	CGCG	2 cut(s)	811, 813
BstHHI	GCGC	3 cut(s)	521, 633, 813
BstKTI	GATC	7 cut(s)	274, 391, 435, 502, 665, 700, 760
BstMBI	GATC	7 cut(s)	271, 388, 432, 499, 662, 697, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 555
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	9
BstUI	CGCG	2 cut(s)	811, 813
BstV1I	GCAGC	3 cut(s)	533, 553, 829
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
BsuRI	GGCC	1 cut(s)	421
BtsIMutI	CAGTG	3 cut(s)	384, 429, 672
CfoI	GCGC	3 cut(s)	521, 633, 813
Cfr13I	GGNCC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	3 cut(s)	13, 110, 143
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	4 cut(s)	87, 486, 627, 825
DpnI	GATC	7 cut(s)	273, 390, 434, 501, 664, 699, 759
DpnII	GATC	7 cut(s)	271, 388, 432, 499, 662, 697, 757
DrdI	GACNNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRI	GAATTC	2 cut(s)	366, 747
EcoRII	CCWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	157
FaeI	CATG	3 cut(s)	16, 113, 146
FaqI	GGGAC	2 cut(s)	39, 600
FatI	CATG	3 cut(s)	12, 109, 142
FbaI	TGATCA	4 cut(s)	271, 388, 697, 757
FblI	GTMKAC	2 cut(s)	39, 642
Fnu4HI	GCNGC	3 cut(s)	522, 567, 843
Fsp4HI	GCNGC	3 cut(s)	522, 567, 843
FspBI	CTAG	3 cut(s)	63, 123, 555
GlaI	GCGC	3 cut(s)	520, 632, 812
GluI	GCNGC	3 cut(s)	522, 567, 843
GsuI	CTGGAG	1 cut(s)	882
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	3 cut(s)	521, 633, 813
Hin1II	CATG	3 cut(s)	16, 113, 146
Hin6I	GCGC	3 cut(s)	519, 631, 811
HinP1I	GCGC	3 cut(s)	519, 631, 811
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	2 cut(s)	314, 527
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	740, 931
Hpy166II	GTNNAC	5 cut(s)	7, 40, 643, 791, 817
Hpy188I	TCNGA	6 cut(s)	90, 276, 319, 504, 578, 628
Hpy188III	TCNNGA	5 cut(s)	128, 194, 340, 436, 899
Hpy8I	GTNNAC	5 cut(s)	7, 40, 643, 791, 817
HpyAV	CCTTC	4 cut(s)	274, 282, 337, 499
HpyCH4III	ACNGT	2 cut(s)	379, 676
HpyCH4V	TGCA	5 cut(s)	7, 155, 611, 845, 921
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 555
HpyF3I	CTNAG	4 cut(s)	87, 486, 627, 825
Hsp92II	CATG	3 cut(s)	16, 113, 146
HspAI	GCGC	3 cut(s)	519, 631, 811
KflI	GGGWCCC	1 cut(s)	587
Ksp22I	TGATCA	4 cut(s)	271, 388, 697, 757
Kzo9I	GATC	7 cut(s)	271, 388, 432, 499, 662, 697, 757
LmnI	GCTCC	3 cut(s)	563, 578, 839
Lsp1109I	GCAGC	3 cut(s)	533, 553, 829
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	3 cut(s)	63, 123, 555
MaeIII	GTNAC	2 cut(s)	65, 884
MalI	GATC	7 cut(s)	273, 390, 434, 501, 664, 699, 759
MboI	GATC	7 cut(s)	271, 388, 432, 499, 662, 697, 757
MboII	GAAGA	2 cut(s)	187, 350
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	421
MluCI	AATT	5 cut(s)	366, 440, 747, 768, 831
MluNI	TGGCCA	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	4 cut(s)	284, 453, 477, 555
MnlI	CCTC	4 cut(s)	421, 529, 632, 902
Mox20I	TGGCCA	1 cut(s)	421
Mph1103I	ATGCAT	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	421
Msp20I	TGGCCA	1 cut(s)	421
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	921
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	2 cut(s)	811, 813
MwoI	GCNNNNNNNGC	2 cut(s)	13, 555
NdeII	GATC	7 cut(s)	271, 388, 432, 499, 662, 697, 757
NlaIII	CATG	3 cut(s)	16, 113, 146
NlaIV	GGNNCC	2 cut(s)	588, 589
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	113
PctI	GAATGC	1 cut(s)	921
PfeI	GAWTC	1 cut(s)	527
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	523, 568, 844
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PpuMI	RGGWCCY	1 cut(s)	587
PsiI	TTATAA	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	588, 589
PspPI	GGNCC	1 cut(s)	587
PspPPI	RGGWCCY	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	662
PsyI	GACNNNGTC	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SalI	GTCGAC	1 cut(s)	38
SatI	GCNGC	3 cut(s)	522, 567, 843
Sau3AI	GATC	7 cut(s)	271, 388, 432, 499, 662, 697, 757
Sau96I	GGNCC	1 cut(s)	587
ScaI	AGTACT	1 cut(s)	720
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	362
SinI	GGWCC	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	783
SmoI	CTYRAG	1 cut(s)	783
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	5 cut(s)	366, 440, 747, 768, 831
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	3 cut(s)	63, 123, 555
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	379, 676
TaqI	TCGA	3 cut(s)	39, 56, 435
TasI	AATT	5 cut(s)	366, 440, 747, 768, 831
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	527
TscAI	CASTG	3 cut(s)	384, 429, 679
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	3 cut(s)	521, 566, 842
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	119, 914, 927
TspRI	CASTG	3 cut(s)	384, 429, 679
Tth111I	GACNNNGTC	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	2 cut(s)	366, 747
XceI	RCATGY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XmiI	GTMKAC	2 cut(s)	39, 642
XspI	CTAG	3 cut(s)	63, 123, 555
ZrmI	AGTACT	1 cut(s)	720
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.