Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0025139

Physical Location & Seq

Genomic Coordinates Reverse (-)

17781689 .. 17783604

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCACACTATTGAAGGGAAATGGAGGATAATAATAGGGTCCAAGGTTAAAAAAACTGGCATGTCTTTGGTTTATGACACCAAGGACTTTATTAAGTTTAAGCAACTTGATGGTGCGCACTTCATGCTGTGCCTGGGACTGGAATGTGTCGACTTCTATCCGGTGTCGAAAACTAGTGACAAGGGGTTGGACACTTCTCAGAATGGGGCTGATGTGAAGCATGTGGTCAAGGCTAGTCTTGATAATGACAGGCATGATTACTATGCATTGGGGTCTTATAATGAGAAGACTGGAAAATGGGTTCCTGATAATCAAAAGATTGATGTTGGGATTGGGATTAGGTATGATTATGGAAAGTTCTATGCTTCCAAGACCTTCTATGATCAGAACAAGCAGAGAAGGGTGTTGTGGGGTTGGATTGGAGAGTCTGATAGTGAGTATGCTGATTTCAAGAAGGGTTGGGCATCTCTTCAGGGAATTCCAAGAACAGTGTTGTTTGATCAAAAGACTGGTAGCAATCTACTTCAATGGCCAGTGGAGGAGATCGAGAAATTGAGATTGAAAAAGAAGACTTTGGACAAGTTGGACATTGTCGCTGAGTTTGAGTTGGATCAGAAGGTTATAGAGAGCGCAGCTGAATCCAACGAGGAGTTCAGTTGCCAAACTAGCGGTGGAGCTGCCAAACTCGGAGCATTGGGACCCTTTGGTCTTGTTGTTCTTGCAGATGACTGCCTCTCTGAGCGCACTCCTGTCTACTTTTATGTTGTCAAAGGATCTGGTGGTACTGTCAATACCTACTTCTGTGCTGATCAAATAAGTTATGTTCCAGTACTGACAGGTGAAAAGCTATCTGTGAGAATTCTGGTTGATCATTCAATAATTGAAAGCTTTGCTCAAGGTGGACGAACAACGATAACAACGCGCGTTTACCCAACTCAGGCAATTTATGGAGCTGCAAGGCTCTTTTTGTTCAACAATGCTACTGACACCAGTTGTTACTGCCTCACTCCAGATATGGCAGATGAACTCTGCATTCATACGCCCATTCTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016787 GO:0016798 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071944 GO:0080022 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

DUF3357 Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

351

Amino Acids

39.28

Weight (kDa)

5.93

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_32N	PF00251	5 - 178	7e-36	Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C	PF08244	181 - 328	1.3e-18	Glycosyl hydrolases family 32 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025139)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0202321
rosa_samantha	Rh7AG197100 Rh7CG208200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AasI	GACNNNNNNGTC	1 cut(s)	705
Acc16I	TGCGCA	1 cut(s)	117
AccI	GTMKAC	2 cut(s)	150, 753
AccII	CGCG	2 cut(s)	922, 924
AciI	CCGC	1 cut(s)	669
AclWI	GGATC	2 cut(s)	618, 781
AcoI	YGGCCR	1 cut(s)	530
AcsI	RAATTY	2 cut(s)	477, 858
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	784, 831
AfiI	CCNNNNNNNGG	2 cut(s)	139, 937
AgsI	TTSAA	7 cut(s)	14, 451, 527, 562, 876, 884, 973
AhlI	ACTAGT	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	5 cut(s)	635, 677, 847, 888, 953
AluI	AGCT	5 cut(s)	635, 677, 847, 888, 953
AlwI	GGATC	2 cut(s)	618, 781
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	632, 677, 953
ApoI	RAATTY	2 cut(s)	477, 858
AspLEI	GCGC	4 cut(s)	118, 632, 744, 924
AspS9I	GGNCC	2 cut(s)	39, 698
AsuHPI	GGTGA	2 cut(s)	851, 1042
AvaII	GGWCC	2 cut(s)	39, 698
BalI	TGGCCA	1 cut(s)	532
BbsI	GAAGAC	2 cut(s)	293, 575
BbvI	GCAGC	3 cut(s)	644, 664, 940
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	4 cut(s)	382, 499, 808, 868
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	3 cut(s)	174, 234, 666
BisI	GCNGC	3 cut(s)	633, 678, 954
BlsI	GCNGC	3 cut(s)	634, 679, 955
BmcAI	AGTACT	1 cut(s)	831
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	2 cut(s)	39, 698
BmgT120I	GGNCC	2 cut(s)	39, 698
BmiI	GGNNCC	4 cut(s)	40, 303, 699, 700
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	293, 575
BpmI	CTGGAG	1 cut(s)	993
BpuEI	CTTGAG	1 cut(s)	879
BsaJI	CCNNGG	3 cut(s)	42, 81, 133
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 937
Bse1I	ACTGG	7 cut(s)	61, 144, 295, 514, 533, 827, 990
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	42, 81, 133
BseLI	CCNNNNNNNGG	2 cut(s)	139, 937
BseMII	CTCAG	4 cut(s)	212, 588, 729, 950
BseNI	ACTGG	7 cut(s)	61, 144, 295, 514, 533, 827, 990
BseRI	GAGGAG	2 cut(s)	554, 662
BseXI	GCAGC	3 cut(s)	644, 664, 940
Bsh1236I	CGCG	2 cut(s)	922, 924
BshFI	GGCC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	150, 711
BslI	CCNNNNNNNGG	2 cut(s)	139, 937
BsmFI	GGGAC	2 cut(s)	150, 711
BsmI	GAATGC	1 cut(s)	1032
BsnI	GGCC	1 cut(s)	532
Bsp143I	GATC	7 cut(s)	382, 499, 543, 610, 773, 808, 868
BspACI	CCGC	1 cut(s)	669
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	4 cut(s)	211, 589, 730, 949
BspFNI	CGCG	2 cut(s)	922, 924
BspLI	GGNNCC	4 cut(s)	40, 303, 699, 700
BspPI	GGATC	2 cut(s)	618, 781
BsrI	ACTGG	7 cut(s)	61, 144, 295, 514, 533, 827, 990
BssECI	CCNNGG	3 cut(s)	42, 81, 133
BssMI	GATC	7 cut(s)	382, 499, 543, 610, 773, 808, 868
BssT1I	CCWWGG	2 cut(s)	42, 81
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	490, 787
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstDEI	CTNAG	4 cut(s)	198, 597, 738, 936
BstFNI	CGCG	2 cut(s)	922, 924
BstHHI	GCGC	4 cut(s)	118, 632, 744, 924
BstKTI	GATC	7 cut(s)	385, 502, 546, 613, 776, 811, 871
BstMBI	GATC	7 cut(s)	382, 499, 543, 610, 773, 808, 868
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 666
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	64, 224
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	2 cut(s)	922, 924
BstV1I	GCAGC	3 cut(s)	644, 664, 940
BstV2I	GAAGAC	2 cut(s)	293, 575
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BsuRI	GGCC	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	495, 540
CfoI	GCGC	4 cut(s)	118, 632, 744, 924
Cfr13I	GGNCC	2 cut(s)	39, 698
Csp6I	GTAC	2 cut(s)	783, 830
CviAII	CATG	4 cut(s)	61, 124, 221, 254
CviJI	RGCY	9 cut(s)	209, 233, 532, 635, 677, 847, 888, 953, 961
CviKI_1	RGCY	9 cut(s)	209, 233, 532, 635, 677, 847, 888, 953, 961
CviQI	GTAC	2 cut(s)	783, 830
DdeI	CTNAG	4 cut(s)	198, 597, 738, 936
DpnI	GATC	7 cut(s)	384, 501, 545, 612, 775, 810, 870
DpnII	GATC	7 cut(s)	382, 499, 543, 610, 773, 808, 868
DrdI	GACNNNNNNGTC	1 cut(s)	705
DseDI	GACNNNNNNGTC	1 cut(s)	705
EaeI	YGGCCR	1 cut(s)	530
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	42, 81
Eco47I	GGWCC	2 cut(s)	39, 698
Eco57I	CTGAAG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRI	GAATTC	2 cut(s)	477, 858
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	42, 81
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	42, 81
FaeI	CATG	4 cut(s)	64, 127, 224, 257
FaqI	GGGAC	2 cut(s)	150, 711
FatI	CATG	4 cut(s)	60, 123, 220, 253
FbaI	TGATCA	4 cut(s)	382, 499, 808, 868
FblI	GTMKAC	2 cut(s)	150, 753
Fnu4HI	GCNGC	3 cut(s)	633, 678, 954
Fsp4HI	GCNGC	3 cut(s)	633, 678, 954
FspAI	RTGCGCAY	1 cut(s)	117
FspBI	CTAG	3 cut(s)	174, 234, 666
FspI	TGCGCA	1 cut(s)	117
GlaI	GCGC	4 cut(s)	117, 631, 743, 923
GluI	GCNGC	3 cut(s)	633, 678, 954
GsuI	CTGGAG	1 cut(s)	993
HaeIII	GGCC	1 cut(s)	532
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	4 cut(s)	118, 632, 744, 924
Hin1II	CATG	4 cut(s)	64, 127, 224, 257
Hin6I	GCGC	4 cut(s)	116, 630, 742, 922
HinP1I	GCGC	4 cut(s)	116, 630, 742, 922
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	886
HinfI	GANTC	2 cut(s)	425, 638
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	851, 1042
Hpy166II	GTNNAC	4 cut(s)	151, 754, 902, 928
Hpy188I	TCNGA	6 cut(s)	201, 387, 430, 615, 689, 739
Hpy188III	TCNNGA	5 cut(s)	239, 305, 451, 547, 1010
Hpy8I	GTNNAC	4 cut(s)	151, 754, 902, 928
HpyAV	CCTTC	5 cut(s)	8, 385, 393, 448, 610
HpyCH4III	ACNGT	2 cut(s)	490, 787
HpyCH4V	TGCA	5 cut(s)	4, 266, 722, 956, 1032
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 666
HpyF3I	CTNAG	4 cut(s)	198, 597, 738, 936
Hsp92II	CATG	4 cut(s)	64, 127, 224, 257
HspAI	GCGC	4 cut(s)	116, 630, 742, 922
KflI	GGGWCCC	1 cut(s)	698
Ksp22I	TGATCA	4 cut(s)	382, 499, 808, 868
Kzo9I	GATC	7 cut(s)	382, 499, 543, 610, 773, 808, 868
LmnI	GCTCC	3 cut(s)	674, 689, 950
Lsp1109I	GCAGC	3 cut(s)	644, 664, 940
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	3 cut(s)	174, 234, 666
MaeIII	GTNAC	2 cut(s)	176, 995
MalI	GATC	7 cut(s)	384, 501, 545, 612, 775, 810, 870
MboI	GATC	7 cut(s)	382, 499, 543, 610, 773, 808, 868
MboII	GAAGA	3 cut(s)	298, 461, 580
MflI	RGATCY	1 cut(s)	773
MlsI	TGGCCA	1 cut(s)	532
MluCI	AATT	5 cut(s)	477, 551, 858, 879, 942
MluNI	TGGCCA	1 cut(s)	532
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	5 cut(s)	168, 395, 564, 588, 666
MnlI	CCTC	5 cut(s)	18, 532, 640, 743, 1013
Mox20I	TGGCCA	1 cut(s)	532
Mph1103I	ATGCAT	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	532
MseI	TTAA	3 cut(s)	48, 93, 99
Msp20I	TGGCCA	1 cut(s)	532
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	1032
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	2 cut(s)	922, 924
MwoI	GCNNNNNNNGC	2 cut(s)	124, 666
NdeII	GATC	7 cut(s)	382, 499, 543, 610, 773, 808, 868
NlaIII	CATG	4 cut(s)	64, 127, 224, 257
NlaIV	GGNNCC	4 cut(s)	40, 303, 699, 700
NmuCI	GTSAC	1 cut(s)	176
NsbI	TGCGCA	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	64, 224
PctI	GAATGC	1 cut(s)	1032
PfeI	GAWTC	1 cut(s)	638
PflFI	GACNNNGTC	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	634, 679, 955
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	698
PsiI	TTATAA	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	4 cut(s)	40, 303, 699, 700
PspPI	GGNCC	2 cut(s)	39, 698
PspPPI	RGGWCCY	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	773
PsyI	GACNNNGTC	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	784, 831
RsaNI	GTAC	2 cut(s)	783, 830
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	48, 93, 99
SatI	GCNGC	3 cut(s)	633, 678, 954
Sau3AI	GATC	7 cut(s)	382, 499, 543, 610, 773, 808, 868
Sau96I	GGNCC	2 cut(s)	39, 698
ScaI	AGTACT	1 cut(s)	831
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	473
SinI	GGWCC	2 cut(s)	39, 698
SmlI	CTYRAG	1 cut(s)	894
SmoI	CTYRAG	1 cut(s)	894
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	5 cut(s)	477, 551, 858, 879, 942
SsiI	CCGC	1 cut(s)	669
SspMI	CTAG	3 cut(s)	174, 234, 666
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	2 cut(s)	42, 81
TaaI	ACNGT	2 cut(s)	490, 787
TaqI	TCGA	3 cut(s)	150, 167, 546
TasI	AATT	5 cut(s)	477, 551, 858, 879, 942
TatI	WGTACW	1 cut(s)	829
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	3 cut(s)	48, 93, 99
Tru9I	TTAA	3 cut(s)	48, 93, 99
TscAI	CASTG	2 cut(s)	495, 540
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	632, 677, 953
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	112, 1025, 1038
TspRI	CASTG	2 cut(s)	495, 540
Tth111I	GACNNNGTC	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	39, 698
XapI	RAATTY	2 cut(s)	477, 858
XceI	RCATGY	2 cut(s)	64, 224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmiI	GTMKAC	2 cut(s)	150, 753
XspI	CTAG	3 cut(s)	174, 234, 666
ZrmI	AGTACT	1 cut(s)	831
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.