Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025145

Physical Location & Seq

Genomic Coordinates Reverse (-)

32440266 .. 32441440

Gene Structure 1175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGTACATGCGCCAACAGCTGCATACAACTCCTCTCCATAGCGGAGGAGACCTTGGCAGAGTTCCTTTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTAGAATGAAGCCTGGTCAGGATTCGGTTGGGATATATCTTTGCTATTTCATAAAGTTGCAGTGGAGTGGAAGCTCGAGCCAGTGGTCTCGTAAGTTTAGAGCCTACGACCGCAAGTGTAAACATCTTCGAATACCGCTCAACCTCTCTCTTTTTTTTTCTTTTTTTCTTTTGGGCTACATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

98

Amino Acids

11.21

Weight (kDa)

9.24

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0025145)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0215011
rosa_multiflora	Rmu_sc0032241.1_g000001 Rmu_sc0032494.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	247
AciI	CCGC	3 cut(s)	44, 220, 245
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	2 cut(s)	21, 183
AluI	AGCT	2 cut(s)	21, 183
Alw26I	GTCTC	2 cut(s)	44, 201
AlwNI	CAGNNNCTG	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	44, 201
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	238
BsaI	GGTCTC	2 cut(s)	44, 201
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	23, 62
BseXI	GCAGC	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	2 cut(s)	44, 201
Bso31I	GGTCTC	2 cut(s)	44, 201
BsoBI	CYCGRG	1 cut(s)	184
Bsp119I	TTCGAA	1 cut(s)	238
BspACI	CCGC	3 cut(s)	44, 220, 245
BspLI	GGNNCC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	238
BspTNI	GGTCTC	2 cut(s)	44, 201
BsrBI	CCGCTC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	44, 201
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	176, 197
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	7 cut(s)	21, 77, 121, 183, 189, 212, 285
CviKI_1	RGCY	7 cut(s)	21, 77, 121, 183, 189, 212, 285
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	44, 201
Eco47I	GGWCC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	12
FaiI	YATR	6 cut(s)	10, 26, 41, 145, 161, 290
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188III	TCNNGA	2 cut(s)	103, 128
Hpy8I	GTNNAC	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	24, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	1 cut(s)	12
LpnPI	CCDG	6 cut(s)	66, 108, 113, 116, 135, 203
Lsp1109I	GCAGC	1 cut(s)	8
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	111
MbiI	CCGCTC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	227
MnlI	CCTC	3 cut(s)	40, 44, 263
MseI	TTAA	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	12
NspV	TTCGAA	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	4 cut(s)	23, 56, 185, 255
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SsiI	CCGC	3 cut(s)	44, 220, 245
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	54
TaqI	TCGA	3 cut(s)	93, 185, 238
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TscAI	CASTG	2 cut(s)	176, 197
TseI	GCWGC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	131, 148
TspRI	CASTG	2 cut(s)	176, 197
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	12
XhoI	CTCGAG	1 cut(s)	184
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.