Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032241.1

Orthogroup ID

OG0025145

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 650

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 253 bp

gcatctggaacgaccacagacaatagctgcgagtctgtggtcatgaatggtcagcaccaacaacagcacaacccaactccccagcatcctcaaagggatgctaacaacccagctggtcttctagcaattgcggaggagaccttggcagagttcctttccaaggctactggaactgctgtcgactgggtccagatgattgggatgaagcctggtccggattctattggaatcgtcgctgtgtcccgcaactcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009799 GO:0009855 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080060 GO:0080090 GO:0090421 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

84

Amino Acids

8.83

Weight (kDa)

5.01

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025145)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0215011
rosa_multiflora	Rmu_sc0032241.1_g000001 Rmu_sc0032494.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	2 cut(s)	131, 244
AfiI	CCNNNNNNNGG	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	27, 113
AluI	AGCT	2 cut(s)	27, 113
Alw26I	GTCTC	1 cut(s)	131
Aor13HI	TCCGGA	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	187, 212
AvaII	GGWCC	2 cut(s)	187, 212
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	2 cut(s)	187, 212
BmgT120I	GGNCC	2 cut(s)	187, 212
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	3 cut(s)	11, 88, 94
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	141, 159
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	172, 188
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	141, 159
BseGI	GGATG	3 cut(s)	85, 103, 207
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	2 cut(s)	172, 188
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	14
BseYI	CCCAGC	2 cut(s)	81, 109
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	226
Bso31I	GGTCTC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	214
BspACI	CCGC	2 cut(s)	131, 244
BspEI	TCCGGA	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	172, 188
BssECI	CCNNGG	2 cut(s)	141, 159
BssT1I	CCWWGG	2 cut(s)	141, 159
Bst2UI	CCWGG	1 cut(s)	210
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	85, 103, 207
BstMAI	GTCTC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	14
BstV2I	GAAGAC	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	197
BtsCI	GGATG	3 cut(s)	85, 103, 207
CciI	TCATGA	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	187, 212
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	4 cut(s)	27, 113, 164, 208
CviKI_1	RGCY	4 cut(s)	27, 113, 164, 208
Eco130I	CCWWGG	2 cut(s)	141, 159
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	187, 212
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	141, 159
ErhI	CCWWGG	2 cut(s)	141, 159
FaeI	CATG	1 cut(s)	46
FaiI	YATR	1 cut(s)	44
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	3 cut(s)	72, 110, 214
Fsp4HI	GCNGC	1 cut(s)	28
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	28
GsaI	CCCAGC	2 cut(s)	85, 113
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	32, 218, 228
HpaII	CCGG	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	4 cut(s)	6, 43, 190, 215
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	46
Kpn2I	TCCGGA	1 cut(s)	214
LpnPI	CCDG	9 cut(s)	95, 99, 123, 153, 169, 195, 203, 222, 228
Lsp1109I	GCAGC	1 cut(s)	14
LweI	GCATC	3 cut(s)	11, 88, 94
MaeI	CTAG	1 cut(s)	122
MboII	GAAGA	1 cut(s)	110
MfeI	CAATTG	1 cut(s)	126
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	2 cut(s)	99, 127
MroI	TCCGGA	1 cut(s)	214
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	210
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	188
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	218, 228
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	29
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	2 cut(s)	81, 109
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	187, 212
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	113
SalI	GTCGAC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	28
Sau96I	GGNCC	2 cut(s)	187, 212
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	3 cut(s)	29, 115, 143
SfaNI	GCATC	3 cut(s)	11, 88, 94
SinI	GGWCC	2 cut(s)	187, 212
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	2 cut(s)	131, 244
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	2 cut(s)	141, 159
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	218, 228
TseI	GCWGC	1 cut(s)	27
TspDTI	ATGAA	2 cut(s)	59, 218
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	187, 212
XagI	CCTNNNNNAGG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.