Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025150

Physical Location & Seq

Genomic Coordinates Reverse (-)

33965756 .. 33967942

Gene Structure 2187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTCTTTTCTAACTTTGGCAGCATGTTCAGCACAGCAGATCATCCACGCGGTAAAACTGAACAATGGGATGAAGAGAGCTTGCATAGGGAAGGTGAGGACTGTGCAACTGGAGGAGACTCAGATGACAATCTGCATAGTCCTTTGATTTCACGCCAGACGACAAGTATGGAAAAGGATATGGTGCCAGCACCTCCTTCCCATGGTAGTATTCTGGGCATGAGGCACAACAGCAGTCTCATGCAAGGAACTGGGGAGACAGTTGGTAGCACAGGCATTGGTGGTGGGTGGCAGTTGGCATGGAAGTGGTCTGAGAGACAAGGCGAGGATGGAAAGAAGGAAGGAGGATTCCAGAGGGTATATTTGCACCAGGAAGGAGTCCCTGGCTCACATCGTGGGTCCCTTGTGTCACTTCCTGGTGGTGATGTTCCTGCAGAAGGCGAGTTCATCCAGGCAGCCGCTCTGGTCAGTCAGCCTGCTCTGTATTCGAAGTCACTTATCGATCAGCATCCTGTTGGACCTGCAATGGTTCATCCATCAGAAACAGCTTCGAAAGGACCAATATGGGCTGCTCTGCTTGAACCAGGGGTTAAGCACGCATTGTTTGTTGGAATTGGAATCCAGATTCTTCAGCAGGATCCTGCTACTGACTACACTTCCTGTGTTGATTGTGTCACTCATTCTTCCAGTCATTGCCAACTTAGTGACCCTAGGTTCAGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

241

Amino Acids

25.83

Weight (kDa)

5.36

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025150)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0216371
rosa_samantha	Rh4CG174400 Rh7AG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	184
AccBSI	CCGCTC	1 cut(s)	461
AccII	CGCG	1 cut(s)	51
AciI	CCGC	2 cut(s)	51, 459
AclWI	GGATC	2 cut(s)	632, 645
AcuI	CTGAAG	1 cut(s)	614
AdeI	CACNNNGTG	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	203, 437
AgsI	TTSAA	1 cut(s)	581
AjnI	CCWGG	5 cut(s)	369, 382, 415, 450, 583
AluBI	AGCT	2 cut(s)	81, 548
AluI	AGCT	2 cut(s)	81, 548
Alw26I	GTCTC	4 cut(s)	111, 242, 251, 310
AlwI	GGATC	2 cut(s)	632, 645
ApeKI	GCWGC	3 cut(s)	21, 455, 569
AspA2I	CCTAGG	1 cut(s)	710
AspS9I	GGNCC	3 cut(s)	399, 518, 557
AsuHPI	GGTGA	2 cut(s)	107, 434
AsuII	TTCGAA	2 cut(s)	488, 551
AvaII	GGWCC	3 cut(s)	399, 518, 557
AvrII	CCTAGG	1 cut(s)	710
BamHI	GGATCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	33, 467, 556
BccI	CCATC	2 cut(s)	323, 544
BciT130I	CCWGG	5 cut(s)	371, 384, 417, 452, 585
BcoDI	GTCTC	4 cut(s)	111, 242, 251, 310
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	4 cut(s)	22, 456, 459, 570
BlnI	CCTAGG	1 cut(s)	710
BlsI	GCNGC	4 cut(s)	23, 457, 460, 571
Bme1390I	CCNGG	5 cut(s)	371, 384, 417, 452, 585
Bme18I	GGWCC	3 cut(s)	399, 518, 557
BmgT120I	GGNCC	3 cut(s)	399, 518, 557
BmiI	GGNNCC	4 cut(s)	186, 400, 401, 639
BmrFI	CCNGG	5 cut(s)	371, 384, 417, 452, 585
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	132
Bpu14I	TTCGAA	2 cut(s)	488, 551
Bsa29I	ATCGAT	1 cut(s)	501
BsaBI	GATNNNNATC	2 cut(s)	129, 507
BsaJI	CCNNGG	4 cut(s)	202, 382, 584, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 437
Bse1I	ACTGG	3 cut(s)	115, 256, 687
Bse3DI	GCAATG	2 cut(s)	531, 691
Bse8I	GATNNNNATC	2 cut(s)	129, 507
BseBI	CCWGG	5 cut(s)	371, 384, 417, 452, 585
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	4 cut(s)	202, 382, 584, 710
BseGI	GGATG	6 cut(s)	43, 76, 334, 447, 508, 532
BseJI	GATNNNNATC	2 cut(s)	129, 507
BseLI	CCNNNNNNNGG	2 cut(s)	203, 437
BseMI	GCAATG	2 cut(s)	531, 691
BseMII	CTCAG	2 cut(s)	135, 303
BseNI	ACTGG	3 cut(s)	115, 256, 687
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	33, 467, 556
Bsh1236I	CGCG	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	501
BslFI	GGGAC	2 cut(s)	365, 385
BslI	CCNNNNNNNGG	2 cut(s)	203, 437
BsmAI	GTCTC	4 cut(s)	111, 242, 251, 310
BsmFI	GGGAC	2 cut(s)	365, 385
Bsp119I	TTCGAA	2 cut(s)	488, 551
Bsp143I	GATC	3 cut(s)	40, 502, 637
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	2 cut(s)	51, 459
BspCNI	CTCAG	2 cut(s)	134, 304
BspDI	ATCGAT	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	4 cut(s)	186, 400, 401, 639
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	632, 645
BspT104I	TTCGAA	2 cut(s)	488, 551
BspT107I	GGYRCC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	531, 691
BsrI	ACTGG	3 cut(s)	115, 256, 687
BssECI	CCNNGG	4 cut(s)	202, 382, 584, 710
BssMI	GATC	3 cut(s)	40, 502, 637
BssT1I	CCWWGG	2 cut(s)	202, 710
Bst2UI	CCWGG	5 cut(s)	371, 384, 417, 452, 585
Bst4CI	ACNGT	2 cut(s)	104, 262
Bst6I	CTCTTC	1 cut(s)	69
BstBI	TTCGAA	2 cut(s)	488, 551
BstC8I	GCNNGC	4 cut(s)	83, 189, 477, 597
BstDEI	CTNAG	3 cut(s)	121, 312, 701
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	6 cut(s)	43, 76, 334, 447, 508, 532
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	3 cut(s)	43, 505, 640
BstMAI	GTCTC	4 cut(s)	111, 242, 251, 310
BstMBI	GATC	3 cut(s)	40, 502, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	5 cut(s)	371, 384, 417, 452, 585
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	5 cut(s)	369, 382, 415, 450, 583
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	33, 467, 556
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	501
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	6 cut(s)	43, 76, 334, 447, 508, 532
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	4 cut(s)	83, 189, 477, 597
Cfr13I	GGNCC	3 cut(s)	399, 518, 557
ClaI	ATCGAT	1 cut(s)	501
CviAII	CATG	5 cut(s)	25, 203, 220, 241, 300
CviJI	RGCY	6 cut(s)	81, 387, 458, 475, 548, 569
CviKI_1	RGCY	6 cut(s)	81, 387, 458, 475, 548, 569
DdeI	CTNAG	3 cut(s)	121, 312, 701
DpnI	GATC	3 cut(s)	42, 504, 639
DpnII	GATC	3 cut(s)	40, 502, 637
DraIII	CACNNNGTG	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	202, 710
Eco47I	GGWCC	3 cut(s)	399, 518, 557
Eco57I	CTGAAG	1 cut(s)	614
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	5 cut(s)	369, 382, 415, 450, 583
EcoT14I	CCWWGG	2 cut(s)	202, 710
ErhI	CCWWGG	2 cut(s)	202, 710
FaeI	CATG	5 cut(s)	28, 206, 223, 244, 303
FaqI	GGGAC	2 cut(s)	365, 385
FatI	CATG	5 cut(s)	24, 202, 219, 240, 299
Fnu4HI	GCNGC	4 cut(s)	22, 456, 459, 570
FokI	GGATG	6 cut(s)	30, 83, 341, 434, 495, 519
Fsp4HI	GCNGC	4 cut(s)	22, 456, 459, 570
FspBI	CTAG	1 cut(s)	711
GluI	GCNGC	4 cut(s)	22, 456, 459, 570
GsuI	CTGGAG	1 cut(s)	132
Hin1II	CATG	5 cut(s)	28, 206, 223, 244, 303
HinfI	GANTC	5 cut(s)	119, 348, 378, 618, 625
HphI	GGTGA	2 cut(s)	107, 434
Hpy188I	TCNGA	3 cut(s)	124, 313, 541
Hpy188III	TCNNGA	2 cut(s)	352, 622
HpyAV	CCTTC	6 cut(s)	86, 207, 331, 335, 368, 431
HpyCH4III	ACNGT	2 cut(s)	104, 262
HpyCH4V	TGCA	7 cut(s)	85, 107, 136, 244, 367, 434, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	3 cut(s)	121, 312, 701
Hsp92II	CATG	5 cut(s)	28, 206, 223, 244, 303
KflI	GGGWCCC	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	40, 502, 637
Lsp1109I	GCAGC	3 cut(s)	33, 467, 556
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	1 cut(s)	711
MaeIII	GTNAC	4 cut(s)	408, 492, 673, 704
MalI	GATC	3 cut(s)	42, 504, 639
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	3 cut(s)	40, 502, 637
MboII	GAAGA	3 cut(s)	86, 620, 675
MflI	RGATCY	1 cut(s)	637
MluCI	AATT	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	113, 387
MmeI	TCCRAC	2 cut(s)	496, 589
MnlI	CCTC	7 cut(s)	91, 107, 204, 216, 319, 338, 348
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	304
MspR9I	CCNGG	5 cut(s)	371, 384, 417, 452, 585
MvaI	CCWGG	5 cut(s)	371, 384, 417, 452, 585
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	3 cut(s)	40, 502, 637
NlaIII	CATG	5 cut(s)	28, 206, 223, 244, 303
NlaIV	GGNNCC	4 cut(s)	186, 400, 401, 639
NmuCI	GTSAC	4 cut(s)	408, 492, 673, 704
NspI	RCATGY	1 cut(s)	28
NspV	TTCGAA	2 cut(s)	488, 551
PfeI	GAWTC	3 cut(s)	348, 618, 625
PkrI	GCNGC	4 cut(s)	23, 457, 460, 571
PleI	GAGTC	2 cut(s)	113, 386
PpsI	GAGTC	2 cut(s)	113, 386
PpuMI	RGGWCCY	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	5 cut(s)	369, 382, 415, 450, 583
PspGI	CCWGG	5 cut(s)	369, 382, 415, 450, 583
PspN4I	GGNNCC	4 cut(s)	186, 400, 401, 639
PspPI	GGNCC	3 cut(s)	399, 518, 557
PspPPI	RGGWCCY	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	4 cut(s)	22, 456, 459, 570
Sau3AI	GATC	3 cut(s)	40, 502, 637
Sau96I	GGNCC	3 cut(s)	399, 518, 557
SchI	GAGTC	2 cut(s)	113, 387
ScrFI	CCNGG	5 cut(s)	371, 384, 417, 452, 585
SetI	ASST	6 cut(s)	83, 97, 196, 523, 550, 716
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	2 cut(s)	488, 551
SinI	GGWCC	3 cut(s)	399, 518, 557
SmiMI	CAYNNNNRTG	1 cut(s)	304
Sse9I	AATT	1 cut(s)	612
SsiI	CCGC	2 cut(s)	51, 459
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	5 cut(s)	369, 382, 415, 450, 583
StyI	CCWWGG	2 cut(s)	202, 710
TaaI	ACNGT	2 cut(s)	104, 262
TaqI	TCGA	3 cut(s)	488, 501, 551
TasI	AATT	1 cut(s)	612
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	348, 618, 625
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TseFI	GTSAC	4 cut(s)	408, 492, 673, 704
TseI	GCWGC	3 cut(s)	21, 455, 569
Tsp45I	GTSAC	4 cut(s)	408, 492, 673, 704
TspDTI	ATGAA	3 cut(s)	87, 436, 521
VpaK11BI	GGWCC	3 cut(s)	399, 518, 557
XagI	CCTNNNNNAGG	1 cut(s)	435
XceI	RCATGY	1 cut(s)	28
XmaJI	CCTAGG	1 cut(s)	710
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.