Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0025150

Physical Location & Seq

Genomic Coordinates Reverse (-)

32699162 .. 32700998

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG298600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTTTGCTTGTCCAAGGTCTTGGAGTTGGAGATGAAACATCTTTAGAAGAGTACATCATAGGCCCAGCTGATGATCTTGATGGTCAGGAAACAGCTGACAAAGACAAAATCAGGTTATATGGACCCGAAGAGGGCCTTTCCTGGGTTGCCAGACCTGTAACTGGGCAGGGTTCTTTTGTCAGTCTTGTCTCTTGCCAAGGAAGCTTGGCAACCCAGAATGTGCCTCTAATGGGTCCTCTTGTCACTCTCTTTGGTAGTGTCCATGAAAACTTCCCAGAGGCAGGGAGTATCCGGGGAAGCATGCTCTTTTCTAACTTTGGCAGCATGTTCAGCACAGCAGATCATCCACGGGGTAAAACTGAACAATGGGATGAAGAGAGCTTGCATAGGGAAGGTGAGGACTGTGCAACTGGAGGAGACTCAGATGACAATCTGCATAGTCCTTTGATTTCACGCCAGACGACAAGTATGGAAAAGGATATGGTGCCACCCCCTCCTTCCCATGGTAGTATTCTAGGCATGAGGCGCAACAGCAGTCTCATGCAAGGAACTGGGGAGACAGTTGGTAGCACAGGCATTGGTGGTGGGTGGCAGTTGGCATGGAAGTGGTCTGAGAGACAAGGCGAGGATGGAAAGAAGGAAGGAGGATTCCAGAGGGTATATTTGCACCAGGAAGGAGTCCCTGGCTCATGTCGTGGGTCCCTTGTGTCACTTCCTGGTGGTGATGTTCCTGCAGAAGGCGAGTTCATCCAGGCAGCCGCTCTGGTCAGTCAGCCTGCTCTGTATTCGAAGTCACTTATCGATCAGCATCCTGTTGGACCTGCAATGGTTCATCCATCAGAAACAGCTTCGAAAGGACCAATATGGGCTGCTCTGCTTGAACCAGGGGTTAAGCACGCATTGTTTGTTGGAATTGGAATCCAGATTCTTCAGCAGGATCCTGCTACTGACTACACTTCCTGTGTTGATTGTGTCACTCATTCTTCTAGTCATTGCCAACTTAGTGACCGTAAGTTCAGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

342

Amino Acids

36.45

Weight (kDa)

4.88

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025150)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0216371
rosa_samantha	Rh4CG174400 Rh7AG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	832
AccB1I	GGYRCC	1 cut(s)	487
AccBSI	CCGCTC	1 cut(s)	764
AciI	CCGC	1 cut(s)	762
AclWI	GGATC	2 cut(s)	935, 948
AcuI	CTGAAG	1 cut(s)	917
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	7 cut(s)	134, 145, 164, 233, 284, 506, 740
AgsI	TTSAA	1 cut(s)	884
AjnI	CCWGG	6 cut(s)	143, 672, 685, 718, 753, 886
AluBI	AGCT	5 cut(s)	71, 98, 207, 384, 851
AluI	AGCT	5 cut(s)	71, 98, 207, 384, 851
Alw26I	GTCTC	5 cut(s)	196, 414, 545, 554, 613
AlwI	GGATC	2 cut(s)	935, 948
AoxI	GGCC	2 cut(s)	64, 136
ApeKI	GCWGC	3 cut(s)	324, 758, 872
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	7 cut(s)	65, 125, 136, 236, 702, 821, 860
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	410, 737
AsuII	TTCGAA	2 cut(s)	791, 854
AvaII	GGWCC	5 cut(s)	125, 236, 702, 821, 860
BamHI	GGATCC	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	487
BbvI	GCAGC	3 cut(s)	336, 770, 859
BccI	CCATC	3 cut(s)	77, 626, 847
BciT130I	CCWGG	6 cut(s)	145, 674, 687, 720, 755, 888
BciVI	GTATCC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	5 cut(s)	196, 414, 545, 554, 613
BfaI	CTAG	2 cut(s)	518, 990
BfmI	CTRYAG	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	832
BfuI	GTATCC	1 cut(s)	302
BisI	GCNGC	4 cut(s)	325, 759, 762, 873
BlsI	GCNGC	4 cut(s)	326, 760, 763, 874
Bme1390I	CCNGG	7 cut(s)	145, 296, 674, 687, 720, 755, 888
Bme18I	GGWCC	5 cut(s)	125, 236, 702, 821, 860
BmgT120I	GGNCC	7 cut(s)	65, 125, 136, 236, 702, 821, 860
BmiI	GGNNCC	6 cut(s)	127, 237, 489, 703, 704, 942
BmrFI	CCNGG	7 cut(s)	145, 296, 674, 687, 720, 755, 888
BmrI	ACTGGG	2 cut(s)	174, 564
BmsI	GCATC	1 cut(s)	820
BmuI	ACTGGG	2 cut(s)	174, 564
BpmI	CTGGAG	1 cut(s)	435
Bpu14I	TTCGAA	2 cut(s)	791, 854
BpuMI	CCSGG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	804
BsaBI	GATNNNNATC	2 cut(s)	432, 810
BsaJI	CCNNGG	8 cut(s)	16, 144, 199, 295, 350, 505, 685, 887
Bsc4I	CCNNNNNNNGG	7 cut(s)	134, 145, 164, 233, 284, 506, 740
Bse1I	ACTGG	3 cut(s)	169, 418, 559
Bse3DI	GCAATG	2 cut(s)	834, 994
Bse8I	GATNNNNATC	2 cut(s)	432, 810
BseBI	CCWGG	6 cut(s)	145, 674, 687, 720, 755, 888
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	8 cut(s)	16, 144, 199, 295, 350, 505, 685, 887
BseGI	GGATG	6 cut(s)	346, 379, 637, 750, 811, 835
BseJI	GATNNNNATC	2 cut(s)	432, 810
BseLI	CCNNNNNNNGG	7 cut(s)	134, 145, 164, 233, 284, 506, 740
BseMI	GCAATG	2 cut(s)	834, 994
BseMII	CTCAG	2 cut(s)	438, 606
BseNI	ACTGG	3 cut(s)	169, 418, 559
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	3 cut(s)	336, 770, 859
BseYI	CCCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	66, 138
BshNI	GGYRCC	1 cut(s)	487
BshVI	ATCGAT	1 cut(s)	804
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	2 cut(s)	668, 688
BslI	CCNNNNNNNGG	7 cut(s)	134, 145, 164, 233, 284, 506, 740
BsmAI	GTCTC	5 cut(s)	196, 414, 545, 554, 613
BsmFI	GGGAC	2 cut(s)	668, 688
BsnI	GGCC	2 cut(s)	66, 138
Bsp119I	TTCGAA	2 cut(s)	791, 854
Bsp143I	GATC	4 cut(s)	76, 343, 805, 940
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	2 cut(s)	66, 138
BspCNI	CTCAG	2 cut(s)	437, 607
BspDI	ATCGAT	1 cut(s)	804
BspLI	GGNNCC	6 cut(s)	127, 237, 489, 703, 704, 942
BspMAI	CTGCAG	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	2 cut(s)	935, 948
BspT104I	TTCGAA	2 cut(s)	791, 854
BspT107I	GGYRCC	1 cut(s)	487
BsrBI	CCGCTC	1 cut(s)	764
BsrDI	GCAATG	2 cut(s)	834, 994
BsrI	ACTGG	3 cut(s)	169, 418, 559
BssECI	CCNNGG	8 cut(s)	16, 144, 199, 295, 350, 505, 685, 887
BssMI	GATC	4 cut(s)	76, 343, 805, 940
BssT1I	CCWWGG	3 cut(s)	16, 199, 505
Bst2UI	CCWGG	6 cut(s)	145, 674, 687, 720, 755, 888
Bst4CI	ACNGT	3 cut(s)	407, 565, 1013
Bst6I	CTCTTC	3 cut(s)	45, 126, 372
BstBI	TTCGAA	2 cut(s)	791, 854
BstC8I	GCNNGC	4 cut(s)	305, 386, 780, 900
BstDEI	CTNAG	3 cut(s)	424, 615, 1004
BstDSI	CCRYGG	2 cut(s)	350, 505
BstENI	CCTNNNNNAGG	1 cut(s)	738
BstF5I	GGATG	6 cut(s)	346, 379, 637, 750, 811, 835
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	4 cut(s)	79, 346, 808, 943
BstMAI	GTCTC	5 cut(s)	196, 414, 545, 554, 613
BstMBI	GATC	4 cut(s)	76, 343, 805, 940
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 333, 528
BstNI	CCWGG	6 cut(s)	145, 674, 687, 720, 755, 888
BstNSI	RCATGY	2 cut(s)	307, 331
BstSCI	CCNGG	7 cut(s)	143, 294, 672, 685, 718, 753, 886
BstSFI	CTRYAG	1 cut(s)	735
BstV1I	GCAGC	3 cut(s)	336, 770, 859
BstX2I	RGATCY	1 cut(s)	940
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	940
Bsu15I	ATCGAT	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	66, 138
BsuTUI	ATCGAT	1 cut(s)	804
BtgI	CCRYGG	2 cut(s)	350, 505
BtsCI	GGATG	6 cut(s)	346, 379, 637, 750, 811, 835
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	4 cut(s)	305, 386, 780, 900
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	7 cut(s)	65, 125, 136, 236, 702, 821, 860
ClaI	ATCGAT	1 cut(s)	804
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	8 cut(s)	266, 304, 328, 506, 523, 544, 603, 693
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	3 cut(s)	424, 615, 1004
DpnI	GATC	4 cut(s)	78, 345, 807, 942
DpnII	GATC	4 cut(s)	76, 343, 805, 940
Eam1104I	CTCTTC	3 cut(s)	45, 126, 372
EarI	CTCTTC	3 cut(s)	45, 126, 372
Eco130I	CCWWGG	3 cut(s)	16, 199, 505
Eco47I	GGWCC	5 cut(s)	125, 236, 702, 821, 860
Eco57I	CTGAAG	1 cut(s)	917
EcoNI	CCTNNNNNAGG	1 cut(s)	738
EcoO109I	RGGNCCY	3 cut(s)	136, 236, 702
EcoRII	CCWGG	6 cut(s)	143, 672, 685, 718, 753, 886
EcoT14I	CCWWGG	3 cut(s)	16, 199, 505
ErhI	CCWWGG	3 cut(s)	16, 199, 505
FaeI	CATG	8 cut(s)	269, 307, 331, 509, 526, 547, 606, 696
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	2 cut(s)	668, 688
FatI	CATG	8 cut(s)	265, 303, 327, 505, 522, 543, 602, 692
Fnu4HI	GCNGC	4 cut(s)	325, 759, 762, 873
FokI	GGATG	6 cut(s)	333, 386, 644, 737, 798, 822
Fsp4HI	GCNGC	4 cut(s)	325, 759, 762, 873
FspBI	CTAG	2 cut(s)	518, 990
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	4 cut(s)	325, 759, 762, 873
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	66, 138
HapII	CCGG	1 cut(s)	295
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	8 cut(s)	269, 307, 331, 509, 526, 547, 606, 696
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	5 cut(s)	422, 651, 681, 921, 928
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	2 cut(s)	410, 737
Hpy188I	TCNGA	3 cut(s)	427, 616, 844
Hpy188III	TCNNGA	4 cut(s)	80, 89, 655, 925
HpyAV	CCTTC	6 cut(s)	389, 510, 634, 638, 671, 734
HpyCH4III	ACNGT	3 cut(s)	407, 565, 1013
HpyCH4V	TGCA	7 cut(s)	388, 410, 439, 547, 670, 737, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 333, 528
HpyF3I	CTNAG	3 cut(s)	424, 615, 1004
Hsp92II	CATG	8 cut(s)	269, 307, 331, 509, 526, 547, 606, 696
HspAI	GCGC	1 cut(s)	529
KflI	GGGWCCC	1 cut(s)	702
Kzo9I	GATC	4 cut(s)	76, 343, 805, 940
Lsp1109I	GCAGC	3 cut(s)	336, 770, 859
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	2 cut(s)	518, 990
MaeIII	GTNAC	6 cut(s)	160, 244, 711, 795, 976, 1007
MalI	GATC	4 cut(s)	78, 345, 807, 942
MbiI	CCGCTC	1 cut(s)	764
MboI	GATC	4 cut(s)	76, 343, 805, 940
MboII	GAAGA	5 cut(s)	62, 143, 389, 923, 978
MflI	RGATCY	1 cut(s)	940
MluCI	AATT	1 cut(s)	915
MlyI	GAGTC	2 cut(s)	416, 690
MmeI	TCCRAC	3 cut(s)	10, 799, 892
MseI	TTAA	1 cut(s)	894
MslI	CAYNNNNRTG	1 cut(s)	607
MspA1I	CMGCKG	2 cut(s)	71, 98
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	7 cut(s)	145, 296, 674, 687, 720, 755, 888
MvaI	CCWGG	6 cut(s)	145, 674, 687, 720, 755, 888
MwoI	GCNNNNNNNGC	3 cut(s)	204, 333, 528
NciI	CCSGG	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	4 cut(s)	76, 343, 805, 940
NlaIII	CATG	8 cut(s)	269, 307, 331, 509, 526, 547, 606, 696
NlaIV	GGNNCC	6 cut(s)	127, 237, 489, 703, 704, 942
NmuCI	GTSAC	5 cut(s)	244, 711, 795, 976, 1007
NspI	RCATGY	2 cut(s)	307, 331
NspV	TTCGAA	2 cut(s)	791, 854
PaeI	GCATGC	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	651, 921, 928
PkrI	GCNGC	4 cut(s)	326, 760, 763, 874
PleI	GAGTC	2 cut(s)	416, 689
PpsI	GAGTC	2 cut(s)	416, 689
PpuMI	RGGWCCY	2 cut(s)	236, 702
Psp5II	RGGWCCY	2 cut(s)	236, 702
Psp6I	CCWGG	6 cut(s)	143, 672, 685, 718, 753, 886
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	6 cut(s)	143, 672, 685, 718, 753, 886
PspN4I	GGNNCC	6 cut(s)	127, 237, 489, 703, 704, 942
PspPI	GGNCC	7 cut(s)	65, 125, 136, 236, 702, 821, 860
PspPPI	RGGWCCY	2 cut(s)	236, 702
PstI	CTGCAG	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	940
PvuII	CAGCTG	2 cut(s)	71, 98
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	607
SaqAI	TTAA	1 cut(s)	894
SatI	GCNGC	4 cut(s)	325, 759, 762, 873
Sau3AI	GATC	4 cut(s)	76, 343, 805, 940
Sau96I	GGNCC	7 cut(s)	65, 125, 136, 236, 702, 821, 860
SchI	GAGTC	2 cut(s)	416, 690
ScrFI	CCNGG	7 cut(s)	145, 296, 674, 687, 720, 755, 888
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	1 cut(s)	735
SfuI	TTCGAA	2 cut(s)	791, 854
SinI	GGWCC	5 cut(s)	125, 236, 702, 821, 860
SmiMI	CAYNNNNRTG	1 cut(s)	607
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	915
SsiI	CCGC	1 cut(s)	762
SspMI	CTAG	2 cut(s)	518, 990
StyD4I	CCNGG	7 cut(s)	143, 294, 672, 685, 718, 753, 886
StyI	CCWWGG	3 cut(s)	16, 199, 505
TaaI	ACNGT	3 cut(s)	407, 565, 1013
TaqI	TCGA	3 cut(s)	791, 804, 854
TasI	AATT	1 cut(s)	915
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	3 cut(s)	651, 921, 928
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TseFI	GTSAC	5 cut(s)	244, 711, 795, 976, 1007
TseI	GCWGC	3 cut(s)	324, 758, 872
Tsp45I	GTSAC	5 cut(s)	244, 711, 795, 976, 1007
TspDTI	ATGAA	5 cut(s)	51, 282, 390, 739, 824
VpaK11BI	GGWCC	5 cut(s)	125, 236, 702, 821, 860
XagI	CCTNNNNNAGG	1 cut(s)	738
XceI	RCATGY	2 cut(s)	307, 331
XspI	CTAG	2 cut(s)	518, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.