Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0025150

Physical Location & Seq

Genomic Coordinates Forward (+)

38014773 .. 38015420

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG174400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTTTGCTTGTCGAAGGTCTTGGAGTTGGAGGTGAAACATCTTTAGAAGAGTACATCATAGGCCCAGCTGATGATCTTGATGGTCAGGAAACAGCTGACAAAGACAAAATCAGGTTATATGGACCCGAAGAGGGCCTTTCCTGGGTTGCCAGACCTGTAACTGGGCAGGGTTCTTTTGTCAGTCTTGTCTCTCGCCAAGGAAGCTTGGCAACCCAGAATGTGCCTCTAATGGATCCTCTTGTCACTCTCTTTGGTAGTGTCCATGAAAACTTCCCAGAGGCAGGGAGTACGCGGGGAAGCATGCTCTTTTCTAACTTTGGCAGCATGTTCAGCACAGCAGATCATCCACGGGGTAAAACTGAACAATGGGATGAAGAGAGCTTGCATAGGGAAGGTGAGGACTATGCATCTGGAGGAGACTCAGATGACAATCTGCATAGTCCTTTGATTTCATGCCAGACGACAAGTATGGAAAAGGATATGGTGCCACCTCCTCCTTCCCATGGTAGTATTCTAGGCATGAGGCGCAACAGCAGTCTCATGCAAGGAACTGGGGAGACAGTTGGTAGCACAGGCATTGGTGGTGGGTGGCAGTTGGCATGGAAGTGGTCTGAGAGACAAGGCGAGGATGGAAAGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

215

Amino Acids

23.09

Weight (kDa)

4.56

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025150)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0216371
rosa_samantha	Rh4CG174400 Rh7AG298600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	487
AccII	CGCG	1 cut(s)	295
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	2 cut(s)	230, 243
AfaI	GTAC	2 cut(s)	56, 292
AfiI	CCNNNNNNNGG	5 cut(s)	134, 145, 164, 284, 506
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	4 cut(s)	71, 98, 207, 384
AluI	AGCT	4 cut(s)	71, 98, 207, 384
Alw26I	GTCTC	5 cut(s)	196, 414, 545, 554, 613
AlwI	GGATC	2 cut(s)	230, 243
AoxI	GGCC	2 cut(s)	64, 136
ApeKI	GCWGC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	3 cut(s)	65, 125, 136
AsuHPI	GGTGA	2 cut(s)	47, 410
AvaII	GGWCC	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	2 cut(s)	77, 626
BciT130I	CCWGG	1 cut(s)	145
BcoDI	GTCTC	5 cut(s)	196, 414, 545, 554, 613
BfaI	CTAG	1 cut(s)	518
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	3 cut(s)	65, 125, 136
BmiI	GGNNCC	3 cut(s)	127, 237, 489
BmrFI	CCNGG	1 cut(s)	145
BmrI	ACTGGG	2 cut(s)	174, 564
BmsI	GCATC	1 cut(s)	419
BmuI	ACTGGG	2 cut(s)	174, 564
BpmI	CTGGAG	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	144, 199, 350, 505
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 145, 164, 284, 506
Bse1I	ACTGG	2 cut(s)	169, 559
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	4 cut(s)	144, 199, 350, 505
BseGI	GGATG	3 cut(s)	346, 379, 637
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	5 cut(s)	134, 145, 164, 284, 506
BseMII	CTCAG	2 cut(s)	438, 606
BseNI	ACTGG	2 cut(s)	169, 559
BseRI	GAGGAG	2 cut(s)	432, 486
BseXI	GCAGC	1 cut(s)	336
BseYI	CCCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	66, 138
BshNI	GGYRCC	1 cut(s)	487
BslI	CCNNNNNNNGG	5 cut(s)	134, 145, 164, 284, 506
BsmAI	GTCTC	5 cut(s)	196, 414, 545, 554, 613
BsnI	GGCC	2 cut(s)	66, 138
Bsp143I	GATC	3 cut(s)	76, 235, 343
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	66, 138
BspCNI	CTCAG	2 cut(s)	437, 607
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	3 cut(s)	127, 237, 489
BspPI	GGATC	2 cut(s)	230, 243
BspT107I	GGYRCC	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	169, 559
BssECI	CCNNGG	4 cut(s)	144, 199, 350, 505
BssMI	GATC	3 cut(s)	76, 235, 343
BssT1I	CCWWGG	2 cut(s)	199, 505
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	3 cut(s)	45, 126, 372
BstC8I	GCNNGC	2 cut(s)	305, 386
BstDEI	CTNAG	2 cut(s)	424, 615
BstDSI	CCRYGG	2 cut(s)	350, 505
BstF5I	GGATG	3 cut(s)	346, 379, 637
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	3 cut(s)	79, 238, 346
BstMAI	GTCTC	5 cut(s)	196, 414, 545, 554, 613
BstMBI	GATC	3 cut(s)	76, 235, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 333, 528
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	2 cut(s)	307, 331
BstSCI	CCNGG	1 cut(s)	143
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	66, 138
BtgI	CCRYGG	2 cut(s)	350, 505
BtsCI	GGATG	3 cut(s)	346, 379, 637
Cac8I	GCNNGC	2 cut(s)	305, 386
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	3 cut(s)	65, 125, 136
Csp6I	GTAC	2 cut(s)	55, 291
CviAII	CATG	8 cut(s)	266, 304, 328, 456, 506, 523, 544, 603
CviJI	RGCY	7 cut(s)	5, 66, 71, 98, 138, 207, 384
CviKI_1	RGCY	7 cut(s)	5, 66, 71, 98, 138, 207, 384
CviQI	GTAC	2 cut(s)	55, 291
DdeI	CTNAG	2 cut(s)	424, 615
DpnI	GATC	3 cut(s)	78, 237, 345
DpnII	GATC	3 cut(s)	76, 235, 343
Eam1104I	CTCTTC	3 cut(s)	45, 126, 372
EarI	CTCTTC	3 cut(s)	45, 126, 372
Eco130I	CCWWGG	2 cut(s)	199, 505
Eco47I	GGWCC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	2 cut(s)	199, 505
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	199, 505
FaeI	CATG	8 cut(s)	269, 307, 331, 459, 509, 526, 547, 606
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	8 cut(s)	265, 303, 327, 455, 505, 522, 543, 602
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	3 cut(s)	333, 386, 644
Fsp4HI	GCNGC	1 cut(s)	325
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	1 cut(s)	325
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	66, 138
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	8 cut(s)	269, 307, 331, 459, 509, 526, 547, 606
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	1 cut(s)	422
HphI	GGTGA	2 cut(s)	47, 410
Hpy188I	TCNGA	2 cut(s)	427, 616
Hpy188III	TCNNGA	3 cut(s)	80, 89, 414
HpyAV	CCTTC	4 cut(s)	11, 389, 510, 634
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4V	TGCA	4 cut(s)	388, 410, 439, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 333, 528
HpyF3I	CTNAG	2 cut(s)	424, 615
Hsp92II	CATG	8 cut(s)	269, 307, 331, 459, 509, 526, 547, 606
HspAI	GCGC	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	76, 235, 343
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	2 cut(s)	160, 244
MalI	GATC	3 cut(s)	78, 237, 345
MboI	GATC	3 cut(s)	76, 235, 343
MboII	GAAGA	3 cut(s)	62, 143, 389
MflI	RGATCY	1 cut(s)	235
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	10
Mph1103I	ATGCAT	1 cut(s)	412
MslI	CAYNNNNRTG	1 cut(s)	607
MspA1I	CMGCKG	2 cut(s)	71, 98
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	204, 333, 528
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	3 cut(s)	76, 235, 343
NlaIII	CATG	8 cut(s)	269, 307, 331, 459, 509, 526, 547, 606
NlaIV	GGNNCC	3 cut(s)	127, 237, 489
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	2 cut(s)	307, 331
PaeI	GCATGC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	3 cut(s)	127, 237, 489
PspPI	GGNCC	3 cut(s)	65, 125, 136
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	2 cut(s)	71, 98
RsaI	GTAC	2 cut(s)	56, 292
RsaNI	GTAC	2 cut(s)	55, 291
RseI	CAYNNNNRTG	1 cut(s)	607
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	3 cut(s)	76, 235, 343
Sau96I	GGNCC	3 cut(s)	65, 125, 136
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	419
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	607
SphI	GCATGC	1 cut(s)	307
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	2 cut(s)	199, 505
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	1 cut(s)	15
TatI	WGTACW	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	324
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	282, 390, 444
VpaK11BI	GGWCC	1 cut(s)	125
XceI	RCATGY	2 cut(s)	307, 331
XspI	CTAG	1 cut(s)	518
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.