RchiOBHm_Chr7g0219331

glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
37718672 .. 37719022
351 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGTTTATATAATATGGTTTTGGTGCAGGCAATCCTTCACAATGCATCTGCTACAGCTTATGACATCATGGGCGGTTGTTTGTGATGTGTGGTATTTGGAGTCCGAAAATATCAAGTCTGGGGAGACTGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTGTTCTAGCAGGACTTAATAAGGTCCTGTGGGATGGGTATCTGAAATACTCCCGTCCTAGCCCAAAGCACAGAGAGCAAAAGTAA

Protein Analysis

83

Amino Acids

9.91

Weight (kDa)

7.79

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020606)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0219331
rosa_rugosa Rorug07G0184400
rosa_samantha Rh5AG229700 Rh5CG253400 Rh7DG322900
rosa_wichuraiana Rw0G004520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 137
AgsI TTSAA 1 cut(s) 137
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 173, 225
BfmI CTRYAG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmsI GCATC 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 204
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 170
BspACI CCGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 29
BstF5I GGATG 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 53
BtsCI GGATG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 1 cut(s) 69
CviJI RGCY 2 cut(s) 58, 228
CviKI_1 RGCY 2 cut(s) 58, 228
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 48
FaeI CATG 1 cut(s) 72
FaiI YATR 6 cut(s) 9, 11, 16, 62, 70, 161
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 68
FokI GGATG 1 cut(s) 212
FspBI CTAG 2 cut(s) 173, 225
Hin1II CATG 1 cut(s) 72
HinfI GANTC 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 106, 210
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 27, 46, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
Hsp92II CATG 1 cut(s) 72
LpnPI CCDG 5 cut(s) 13, 105, 139, 162, 206
LweI GCATC 1 cut(s) 55
MaeI CTAG 2 cut(s) 173, 225
MluCI AATT 2 cut(s) 137, 162
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 1 cut(s) 141
Mph1103I ATGCAT 1 cut(s) 48
MseI TTAA 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 241
NlaIII CATG 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 48
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
SaqAI TTAA 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 110
SetI ASST 2 cut(s) 60, 192
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 190
Sse9I AATT 2 cut(s) 137, 162
SsiI CCGC 1 cut(s) 74
SspMI CTAG 2 cut(s) 173, 225
TasI AATT 2 cut(s) 137, 162
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 137
XspI CTAG 2 cut(s) 173, 225
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.