Rorug07G0184400

glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
15440765 .. 15444818
4054 bp
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UTR
Exon/CDS
Intron
Rorug07G0184400.1

Sequence Viewer

Length: 201 bp
ATGCAGGCAATGCAAGCGGCGGAAACGGCCTGCATTGCCTGTGGCCTGGTTGCCGTTTCCGCCGTCGCATTGCCGCCGCCCATGCTGGAAATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAGGCACAAGCAATTGCAATGCTTGAATCCTTACCTCAGCTTCCATTTTCTGTTGTTAATGCTCTGCATCATTGA

Protein Analysis

66

Amino Acids

6.94

Weight (kDa)

4.63

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020606)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0219331
rosa_rugosa Rorug07G0184400
rosa_samantha Rh5AG229700 Rh5CG253400 Rh7DG322900
rosa_wichuraiana Rw0G004520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 17, 20, 60, 74, 77
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AoxI GGCC 2 cut(s) 27, 43
AseI ATTAAT 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 162
BceAI ACGGC 3 cut(s) 38, 42, 47
BciT130I CCWGG 1 cut(s) 47
BisI GCNGC 3 cut(s) 18, 74, 77
BlsI GCNGC 3 cut(s) 19, 75, 78
Bme1390I CCNGG 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 47
Bpu10I CCTNAGC 2 cut(s) 126, 162
Bse3DI GCAATG 4 cut(s) 15, 33, 68, 150
BseBI CCWGG 1 cut(s) 47
BseMI GCAATG 4 cut(s) 15, 33, 68, 150
BseMII CTCAG 2 cut(s) 140, 176
BshFI GGCC 2 cut(s) 29, 45
BsnI GGCC 2 cut(s) 29, 45
BspACI CCGC 5 cut(s) 17, 20, 60, 74, 77
BspANI GGCC 2 cut(s) 29, 45
BspCNI CTCAG 2 cut(s) 139, 175
BsrDI GCAATG 4 cut(s) 15, 33, 68, 150
Bst2UI CCWGG 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 3 cut(s) 6, 15, 31
BstDEI CTNAG 2 cut(s) 126, 162
BstMWI GCNNNNNNNGC 6 cut(s) 10, 14, 26, 35, 59, 82
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BsuRI GGCC 2 cut(s) 29, 45
Cac8I GCNNGC 3 cut(s) 6, 15, 31
CviAII CATG 1 cut(s) 82
CviJI RGCY 3 cut(s) 29, 45, 166
CviKI_1 RGCY 3 cut(s) 29, 45, 166
DdeI CTNAG 2 cut(s) 126, 162
EciI GGCGGA 2 cut(s) 35, 49
EcoRII CCWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 85
FaiI YATR 1 cut(s) 83
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 18, 74, 77
Fsp4HI GCNGC 3 cut(s) 18, 74, 77
GluI GCNGC 3 cut(s) 18, 74, 77
HaeIII GGCC 2 cut(s) 29, 45
Hin1II CATG 1 cut(s) 85
HinfI GANTC 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 5 cut(s) 4, 13, 33, 143, 193
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 14, 26, 35, 59, 82
HpyF3I CTNAG 2 cut(s) 126, 162
Hsp92II CATG 1 cut(s) 85
LpnPI CCDG 6 cut(s) 32, 43, 52, 59, 71, 113
MfeI CAATTG 1 cut(s) 138
MluCI AATT 2 cut(s) 90, 138
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 1 cut(s) 171
MseI TTAA 2 cut(s) 93, 183
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 6 cut(s) 10, 14, 26, 35, 59, 82
NlaIII CATG 1 cut(s) 85
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 3 cut(s) 19, 75, 78
PshBI ATTAAT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
SaqAI TTAA 2 cut(s) 93, 183
SatI GCNGC 3 cut(s) 18, 74, 77
ScrFI CCNGG 1 cut(s) 47
SetI ASST 2 cut(s) 163, 168
Sse9I AATT 2 cut(s) 90, 138
SsiI CCGC 5 cut(s) 17, 20, 60, 74, 77
StyD4I CCNGG 1 cut(s) 45
TasI AATT 2 cut(s) 90, 138
TauI GCSGC 3 cut(s) 20, 76, 79
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 93, 183
Tru9I TTAA 2 cut(s) 93, 183
VspI ATTAAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.