Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00169

Orthogroup ID

OG0020606

Physical Location & Seq

Genomic Coordinates Reverse (-)

39394 .. 43648

Gene Structure 4255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATATTATACTTTCCCTATTCAATTGGCAGAACGGAATTTTACAAGCTTGAGAAGGTTCTTCCTGAAGAAGATTATGTAATTCCAACACAGATTACATTCCGGATATCTTCAGACAAAAAAATCACTCTTTTGGAAGTGAATGGAAAAAAATTCACTGAATGGATTTATTTAGAAAAACACGGTGACATATACGAGAGAACTTTGGACGCTTCTTCTCAGTGCGGTGCATTTGAGCTTGGCTGCTCAGTTTGCCGTCTCGCAATCAAGCAATCCTTCACAATGCATCTGCTACAGCTTATGACATCATGGGCAGTTGTTTGTGATGTGTGGTATTTGGAGTCCGAAAATATCAAGCCTGGGGAGACTGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTGTTCGAGCAGGACTTAATAAGGTCCCGTGGGATGGGTATCTGAAATACTCCCGTCCTAGCCCAAAGCACACAGAGAAAAAACAACAAAGTTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004366 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006072 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006638 GO:0006639 GO:0006641 GO:0006651 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010154 GO:0010344 GO:0010876 GO:0012505 GO:0016020 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0019637 GO:0019752 GO:0019915 GO:0021700 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051235 GO:0052646 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098827 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

168

Amino Acids

19.53

Weight (kDa)

6.83

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020606)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219331
rosa_rugosa	Rorug07G0184400
rosa_samantha	Rh5AG229700 Rh5CG253400 Rh7DG322900
rosa_wichuraiana	Rw0G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	38, 152, 377
AcuI	CTGAAG	2 cut(s)	87, 96
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	24, 377
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	49, 238, 298
AluI	AGCT	3 cut(s)	49, 238, 298
Alw26I	GTCTC	2 cut(s)	263, 359
Aor13HI	TCCGGA	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	3 cut(s)	38, 152, 377
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	263, 359
BfaI	CTAG	2 cut(s)	465, 505
BfmI	CTRYAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	359, 434
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	359, 434
BseGI	GGATG	1 cut(s)	445
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	233, 261
BseXI	GCAGC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	2 cut(s)	410, 416
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	2 cut(s)	263, 359
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	2 cut(s)	410, 416
Bsp13I	TCCGGA	1 cut(s)	102
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	232, 260
BspEI	TCCGGA	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	432
BssECI	CCNNGG	2 cut(s)	359, 434
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	219, 247
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	445
BstMAI	GTCTC	2 cut(s)	263, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	156, 227
Cfr13I	GGNCC	1 cut(s)	430
CseI	GACGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	6 cut(s)	49, 238, 243, 298, 358, 468
CviKI_1	RGCY	6 cut(s)	49, 238, 243, 298, 358, 468
DdeI	CTNAG	2 cut(s)	219, 247
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	87, 96
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	1 cut(s)	312
FaiI	YATR	7 cut(s)	10, 78, 191, 193, 302, 310, 401
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	410, 416
FatI	CATG	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	2 cut(s)	465, 505
GluI	GCNGC	1 cut(s)	244
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	3 cut(s)	115, 346, 450
Hpy188III	TCNNGA	2 cut(s)	65, 103
HpyAV	CCTTC	2 cut(s)	49, 286
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	230, 286, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	219, 247
Hsp92II	CATG	1 cut(s)	312
Kpn2I	TCCGGA	1 cut(s)	102
LpnPI	CCDG	6 cut(s)	78, 116, 345, 372, 379, 402
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	465, 505
MaeIII	GTNAC	1 cut(s)	185
MboII	GAAGA	5 cut(s)	53, 80, 83, 102, 207
MfeI	CAATTG	1 cut(s)	24
MluCI	AATT	6 cut(s)	24, 38, 81, 152, 377, 402
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	288
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	1 cut(s)	423
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	252
NlaIII	CATG	1 cut(s)	312
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	430
PspPPI	RGGWCCY	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	5 cut(s)	51, 60, 240, 300, 432
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	6 cut(s)	24, 38, 81, 152, 377, 402
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	465, 505
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	412
TasI	AATT	6 cut(s)	24, 38, 81, 152, 377, 402
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	163, 227
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	163, 227
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	3 cut(s)	38, 152, 377
XspI	CTAG	2 cut(s)	465, 505
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.