Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025119

Physical Location & Seq

Genomic Coordinates Reverse (-)

38579778 .. 38580368

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTCAAAGCCAATATCAGTACCAGCACTAACAAAACCCATACTGCAATGTGTAAGATGGGTTGGTTAGTGGATGGACGATCTAGATTGCATAAAAGAGATCAAAATCCCAATTCCAATATGTCAAATTACATTGGGAATGTATTGTCTTTGGCTTTTGGAGAGGCAAGTGTGGATGAGTTGAAGAAGGGTTCTACATCAGATGTTGCTAACATAGTGCCTGAGGCAATTTCCAAGGTAACAAATGAGGAACATTTCTTGGATTTGATTGATTGGATTGAGTGCCACAGGCCAGGATTAATGCTATCCAAGATTGTGCTAGGACAAGGAGGAGTGCCGGCACTTGTTTTGTCGTTGGGGAGAATGTTTCCAGTTGCTGAATTGGACTTTGGATTTGGGAGTCCGGTGCTTGGGACGGTGTGTTCAACTATTGAGAGGATTGGAGTGTCTTACATGAACCAAAGGCCAAGTGCAAAGGGTAATGGTTCTTGGACTGTTTCATGTATCCTATGGCCAGAATTAGCAGCTGCTTTAGAATCTGACTCCATTTTTCAGCCCATGACTGCTGGCCATCTACAACTTCAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

196

Amino Acids

21.21

Weight (kDa)

6.19

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	8 - 179	1.3e-18	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219871
rosa_multiflora	Rmu_co8381651.1_g000001
rosa_samantha	Rh7DG288000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	512, 568
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	184, 426, 584
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	4 cut(s)	290, 464, 512, 568
ApeKI	GCWGC	2 cut(s)	524, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AseI	ATTAAT	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	222
BalI	TGGCCA	2 cut(s)	514, 570
BbvI	GCAGC	2 cut(s)	514, 536
BccI	CCATC	3 cut(s)	52, 68, 579
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	515
BfaI	CTAG	3 cut(s)	84, 320, 589
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	2 cut(s)	525, 528
BlsI	GCNGC	2 cut(s)	526, 529
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	371
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	79, 181
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	514, 536
BshFI	GGCC	4 cut(s)	292, 466, 514, 570
BsiSI	CCGG	2 cut(s)	338, 404
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	4 cut(s)	292, 466, 514, 570
Bsp143I	GATC	2 cut(s)	80, 100
BspANI	GGCC	4 cut(s)	292, 466, 514, 570
BspCNI	CTCAG	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	80, 100
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	418, 496
BstC8I	GCNNGC	2 cut(s)	339, 568
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	79, 181
BstKTI	GATC	2 cut(s)	83, 103
BstMBI	GATC	2 cut(s)	80, 100
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	514, 536
Bsu36I	CCTNAGG	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	4 cut(s)	292, 466, 514, 570
BtsCI	GGATG	2 cut(s)	79, 181
Cac8I	GCNNGC	2 cut(s)	339, 568
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	454, 501, 559
CviJI	RGCY	8 cut(s)	11, 155, 292, 466, 514, 527, 556, 570
CviKI_1	RGCY	8 cut(s)	11, 155, 292, 466, 514, 527, 556, 570
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	82, 102
DpnII	GATC	2 cut(s)	80, 100
EaeI	YGGCCR	2 cut(s)	512, 568
Eco130I	CCWWGG	1 cut(s)	234
Eco81I	CCTNAGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	3 cut(s)	457, 504, 562
FaiI	YATR	8 cut(s)	42, 93, 122, 215, 455, 502, 511, 560
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	3 cut(s)	453, 500, 558
Fnu4HI	GCNGC	2 cut(s)	525, 528
FokI	GGATG	2 cut(s)	86, 188
Fsp4HI	GCNGC	2 cut(s)	525, 528
FspBI	CTAG	3 cut(s)	84, 320, 589
GluI	GCNGC	2 cut(s)	525, 528
HaeIII	GGCC	4 cut(s)	292, 466, 514, 570
HapII	CCGG	2 cut(s)	338, 404
Hin1II	CATG	3 cut(s)	457, 504, 562
HinfI	GANTC	3 cut(s)	400, 536, 542
HpaII	CCGG	2 cut(s)	338, 404
Hpy188I	TCNGA	2 cut(s)	202, 541
Hpy188III	TCNNGA	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	418, 496
HpyCH4V	TGCA	3 cut(s)	47, 91, 473
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	457, 504, 562
KroI	GCCGGC	1 cut(s)	337
KroNI	GCCGGC	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	80, 100
Lsp1109I	GCAGC	2 cut(s)	514, 536
MaeI	CTAG	3 cut(s)	84, 320, 589
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	82, 102
MboI	GATC	2 cut(s)	80, 100
MboII	GAAGA	1 cut(s)	196
MlsI	TGGCCA	2 cut(s)	514, 570
MluCI	AATT	5 cut(s)	112, 127, 228, 380, 518
MluNI	TGGCCA	2 cut(s)	514, 570
MlyI	GAGTC	2 cut(s)	409, 536
MnlI	CCTC	5 cut(s)	157, 217, 241, 323, 429
Mox20I	TGGCCA	2 cut(s)	514, 570
MroNI	GCCGGC	1 cut(s)	337
MscI	TGGCCA	2 cut(s)	514, 570
MseI	TTAA	1 cut(s)	299
Msp20I	TGGCCA	2 cut(s)	514, 570
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	338, 404
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
NaeI	GCCGGC	1 cut(s)	339
NdeII	GATC	2 cut(s)	80, 100
NgoMIV	GCCGGC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	457, 504, 562
PdiI	GCCGGC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	526, 529
PleI	GAGTC	2 cut(s)	408, 536
PpsI	GAGTC	2 cut(s)	408, 536
PshBI	ATTAAT	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	2 cut(s)	525, 528
Sau3AI	GATC	2 cut(s)	80, 100
SchI	GAGTC	2 cut(s)	409, 536
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	2 cut(s)	240, 529
Sse9I	AATT	5 cut(s)	112, 127, 228, 380, 518
SspMI	CTAG	3 cut(s)	84, 320, 589
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	418, 496
TasI	AATT	5 cut(s)	112, 127, 228, 380, 518
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TseI	GCWGC	2 cut(s)	524, 527
TspDTI	ATGAA	2 cut(s)	470, 489
VspI	ATTAAT	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	83
XspI	CTAG	3 cut(s)	84, 320, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.