Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0025119

Physical Location & Seq

Genomic Coordinates Reverse (-)

32185899 .. 32186369

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG288000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCAAATTACATTGGGAATGTGTTGTCTTTGGCTTTTGGAGAGGCAACTGTGGATGAGTTGAAGAAGGGTTCTATATCAGATGTTGCTGACATAGTGCGTGAGGCAATTTCCAAGGTAACAAATGAGGAACATTTCTTGGATTTGATTGATTGGATTCAGTGCCACAGGCCAGGATTAATGCTATCCAAGATTGTGCTAGGACAAGGAGGAGTGTCGGCACTTGTTTTGTCGTCGGGGAGAATGTTTCCAGTTGCTGAATTGGACTTCGGATTTGGGAGTCTGGTGCTTGGGACGGTGTGTTCAACTATTGAGAGGATTGGAGTGGCTTACATGAACCAAAGGCCAAGTGCAAAGGGTGATGGTTCTTGGACTGTTTCATGTATCCTATGGCAAGAATTAGCAGCTGCTTTAGAATCTGACTCCATTTTTCAGCCCATGACTACTGGCCATCTACAACTTCAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

156

Amino Acids

16.81

Weight (kDa)

4.78

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	3 - 140	3.5e-16	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0025119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219871
rosa_multiflora	Rmu_co8381651.1_g000001
rosa_samantha	Rh7DG288000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	64, 306, 464
AjnI	CCWGG	1 cut(s)	172
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	170, 344, 448
ApeKI	GCWGC	2 cut(s)	404, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AseI	ATTAAT	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	394, 416
BccI	CCATC	2 cut(s)	356, 459
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	200, 469
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	405, 408
BlsI	GCNGC	2 cut(s)	406, 409
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	251, 451
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	251, 451
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	394, 416
BshFI	GGCC	3 cut(s)	172, 346, 450
BslFI	GGGAC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	172, 346, 450
BspANI	GGCC	3 cut(s)	172, 346, 450
BsrI	ACTGG	2 cut(s)	251, 451
BssECI	CCNNGG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	3 cut(s)	52, 298, 376
BstF5I	GGATG	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	394, 416
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	172, 346, 450
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	167
CaiI	CAGNNNCTG	1 cut(s)	257
CviAII	CATG	3 cut(s)	334, 381, 439
CviJI	RGCY	7 cut(s)	35, 172, 329, 346, 407, 436, 450
CviKI_1	RGCY	7 cut(s)	35, 172, 329, 346, 407, 436, 450
EaeI	YGGCCR	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	337, 384, 442
FaiI	YATR	6 cut(s)	77, 95, 335, 382, 391, 440
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	333, 380, 438
Fnu4HI	GCNGC	2 cut(s)	405, 408
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	405, 408
FspBI	CTAG	2 cut(s)	200, 469
GluI	GCNGC	2 cut(s)	405, 408
HaeIII	GGCC	3 cut(s)	172, 346, 450
Hin1II	CATG	3 cut(s)	337, 384, 442
HinfI	GANTC	4 cut(s)	157, 280, 416, 422
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	3 cut(s)	82, 272, 421
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	3 cut(s)	52, 298, 376
HpyCH4V	TGCA	1 cut(s)	353
Hsp92II	CATG	3 cut(s)	337, 384, 442
LpnPI	CCDG	6 cut(s)	154, 159, 186, 264, 269, 432
Lsp1109I	GCAGC	2 cut(s)	394, 416
MaeI	CTAG	2 cut(s)	200, 469
MaeIII	GTNAC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	76
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	4 cut(s)	7, 108, 260, 398
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	289, 416
MnlI	CCTC	5 cut(s)	37, 97, 121, 203, 309
Mox20I	TGGCCA	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
NlaIII	CATG	3 cut(s)	337, 384, 442
PfeI	GAWTC	2 cut(s)	157, 416
PkrI	GCNGC	2 cut(s)	406, 409
PleI	GAGTC	2 cut(s)	288, 416
PpsI	GAGTC	2 cut(s)	288, 416
PshBI	ATTAAT	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	405, 408
SchI	GAGTC	2 cut(s)	289, 416
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	2 cut(s)	120, 409
Sse9I	AATT	4 cut(s)	7, 108, 260, 398
SspMI	CTAG	2 cut(s)	200, 469
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	52, 298, 376
TasI	AATT	4 cut(s)	7, 108, 260, 398
TfiI	GAWTC	2 cut(s)	157, 416
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	2 cut(s)	404, 407
TspDTI	ATGAA	2 cut(s)	350, 369
TspRI	CASTG	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	179
XspI	CTAG	2 cut(s)	200, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.