Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8381651.1

Orthogroup ID

OG0025119

Physical Location & Seq

Genomic Coordinates Forward (+)

68 .. 466

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8381651.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgtcaaattacattgggaatgtgttgtctttggctcttggagaggcaagtgtggatgagttgaagaagggttctatatcagatgttgctaacatagtgcgtgaggcaatttccaaggtaacaaatgaggaacatttcttagatttgattgattggattgagtgccacaggccaggattaatgctatccaagattgtgctaggacaaggaggagtgctggcacttgttttgtcatcggggagaatgtttccagttgctgaattggacttcggatttgggagtccggtgcttgggacggtgtgttcaactattgagaggattggaatggcttacatgaaccaaaggccaagggaaaagggtggtggttcttggactgtttcatgtatcctatggccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

132

Amino Acids

14.27

Weight (kDa)

5.31

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219871
rosa_multiflora	Rmu_co8381651.1_g000001
rosa_samantha	Rh7DG288000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	64, 306
AjnI	CCWGG	1 cut(s)	172
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	170, 344, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AseI	ATTAAT	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	114, 347
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	114, 347
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	172, 346, 394
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	172, 346, 394
BspANI	GGCC	3 cut(s)	172, 346, 394
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	114, 347
BssT1I	CCWWGG	2 cut(s)	114, 347
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	298, 376
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	172, 346, 394
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	257
CviAII	CATG	2 cut(s)	334, 381
CviJI	RGCY	5 cut(s)	35, 172, 329, 346, 394
CviKI_1	RGCY	5 cut(s)	35, 172, 329, 346, 394
DdeI	CTNAG	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	114, 347
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	114, 347
ErhI	CCWWGG	2 cut(s)	114, 347
FaeI	CATG	2 cut(s)	337, 384
FaiI	YATR	6 cut(s)	77, 95, 335, 382, 391, 397
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	2 cut(s)	333, 380
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	172, 346, 394
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	2 cut(s)	337, 384
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	82, 272
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	298, 376
HpyF3I	CTNAG	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	337, 384
LpnPI	CCDG	6 cut(s)	154, 159, 186, 203, 264, 297
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	76
MlsI	TGGCCA	1 cut(s)	394
MluCI	AATT	3 cut(s)	7, 108, 260
MluNI	TGGCCA	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	37, 97, 121, 203, 309
Mox20I	TGGCCA	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	394
MseI	TTAA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	394
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
NlaIII	CATG	2 cut(s)	337, 384
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	179
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	1 cut(s)	120
Sse9I	AATT	3 cut(s)	7, 108, 260
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	114, 347
TaaI	ACNGT	2 cut(s)	298, 376
TasI	AATT	3 cut(s)	7, 108, 260
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	350, 369
VspI	ATTAAT	1 cut(s)	179
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.