RchiOBHm_Chr6g0262221

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0022788
Physical Location & Seq
Reverse (-)
16897709 .. 16898087
379 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGAAGTGGCTTGGCATTGATGTAGAACTCGAGCCATCCTTGGTTTCGGAAGCAATTACTAGTGCATCACTTCATTCTTGCAACCCGAAAGTGGATGATGAGATTGGACTCTTAGAGTCAAAGCTCGGTTATGTTTTTTCTACCAAGGGTCTCTTACATGAGGCCATAACACATGCATCTGAGCGAGGCTACTCTTATGAGAGACTAGAATTTCTTGGTGATTGTGTGTTGGACCTGCTTATCACATGTATCTCTATCAGAGCTACAAAGATATTGATCCAGGCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

96

Amino Acids

10.57

Weight (kDa)

4.86

Isoelectric Point (pI)

18.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022788)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0262221
rosa_samantha Rh6BG109600 Rh6CG107100 Rh6DG097600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 245
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 2 cut(s) 124, 263
AluI AGCT 2 cut(s) 124, 263
Alw26I GTCTC 2 cut(s) 155, 196
AlwI GGATC 1 cut(s) 271
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 232
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 155, 196
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 2 cut(s) 60, 206
BfuAI ACCTGC 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 74, 185
BsaBI GATNNNNATC 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 39, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 275
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 39, 144
BseGI GGATG 2 cut(s) 35, 100
BseJI GATNNNNATC 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 155, 196
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 29
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 271
BspTNI GGTCTC 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 39, 144
BssMI GATC 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 39, 144
Bst2UI CCWGG 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 112, 180
BstF5I GGATG 2 cut(s) 35, 100
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 2 cut(s) 155, 196
BstMBI GATC 1 cut(s) 276
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 2 cut(s) 176, 249
BstSCI CCNGG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 35, 100
BveI ACCTGC 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 232
CviAII CATG 3 cut(s) 158, 173, 246
CviJI RGCY 6 cut(s) 10, 34, 124, 164, 189, 263
CviKI_1 RGCY 6 cut(s) 10, 34, 124, 164, 189, 263
DdeI CTNAG 2 cut(s) 112, 180
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 39, 144
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 39, 144
EcoT22I ATGCAT 1 cut(s) 178
ErhI CCWWGG 2 cut(s) 39, 144
FaeI CATG 3 cut(s) 161, 176, 249
FaiI YATR 6 cut(s) 132, 159, 167, 174, 198, 247
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 3 cut(s) 157, 172, 245
FokI GGATG 2 cut(s) 22, 107
FspBI CTAG 2 cut(s) 60, 206
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 3 cut(s) 161, 176, 249
HinfI GANTC 2 cut(s) 108, 116
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 3 cut(s) 49, 181, 260
HpyCH4V TGCA 3 cut(s) 65, 81, 176
HpyF3I CTNAG 2 cut(s) 112, 180
Hsp92II CATG 3 cut(s) 161, 176, 249
Kzo9I GATC 1 cut(s) 276
LpnPI CCDG 2 cut(s) 248, 266
LweI GCATC 2 cut(s) 74, 185
MaeI CTAG 2 cut(s) 60, 206
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MluCI AATT 2 cut(s) 54, 209
MlyI GAGTC 2 cut(s) 102, 125
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 2 cut(s) 154, 179
Mph1103I ATGCAT 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
NdeII GATC 1 cut(s) 276
NlaIII CATG 3 cut(s) 161, 176, 249
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 2 cut(s) 176, 249
PaeR7I CTCGAG 1 cut(s) 29
PciI ACATGT 1 cut(s) 245
PleI GAGTC 2 cut(s) 102, 124
PpsI GAGTC 2 cut(s) 102, 124
PscI ACATGT 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspPI GGNCC 1 cut(s) 232
PspXI VCTCGAGB 1 cut(s) 29
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 2 cut(s) 102, 125
ScrFI CCNGG 1 cut(s) 281
SetI ASST 3 cut(s) 126, 237, 265
SfaNI GCATC 2 cut(s) 74, 185
Sfr274I CTCGAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 232
SlaI CTCGAG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 2 cut(s) 54, 209
SspMI CTAG 2 cut(s) 60, 206
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 2 cut(s) 39, 144
TaqI TCGA 1 cut(s) 30
TasI AATT 2 cut(s) 54, 209
TspDTI ATGAA 2 cut(s) 17, 62
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 209
XceI RCATGY 2 cut(s) 176, 249
XhoI CTCGAG 1 cut(s) 29
XspI CTAG 2 cut(s) 60, 206
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.