Rh6DG097600

Belongs to the helicase family. Dicer subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
12225734 .. 12226759
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG097600.1

Sequence Viewer

Length: 423 bp
ATGGTAGGTGCTGAAAAGTGCTGTGACAAGGGCCATAGATTAATGAGTTCAAAAACAATCTCTGATTGTGTTGAAGCACTTATAGGAGCTTATTACGTGATCAGTGGTGGATTGTCTGCTGCAGTTCATCTTATGAAGTGGCTCGGCATTGATGTAGAACTCGAGCCATCCTTGGTTTCGGAAGCAATTACTAGTGCATCACTTCATTCTTGCAACCCGAAAGTGGATGATGAGATTGGACTCTTAGAGTCAAAGCTCGGTTATGTTTTTTCTACCAAGGGTCTCTTACATGAGGCCATAACACATGCATCTGAGCAAGGCTACTCTGATGAGAGACTAGAATTTCTTGGTGATTGTGCGTTGGACCTGCTTATCACATGTATCTCTATCAGAGCTACAAAGATATTGATCCAGGCGAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling

Protein Analysis

140

Amino Acids

15.06

Weight (kDa)

4.97

Isoelectric Point (pI)

22.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022788)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0262221
rosa_samantha Rh6BG109600 Rh6CG107100 Rh6DG097600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 2 cut(s) 51, 74
AhlI ACTAGT 1 cut(s) 191
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 3 cut(s) 89, 256, 395
AluI AGCT 3 cut(s) 89, 256, 395
Alw26I GTCTC 2 cut(s) 287, 328
AlwI GGATC 1 cut(s) 403
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 2 cut(s) 31, 294
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 341
AseI ATTAAT 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 31, 364
AsuHPI GGTGA 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 413
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 287, 328
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 2 cut(s) 192, 338
BfmI CTRYAG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 31, 364
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 2 cut(s) 206, 317
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 171, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 407
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 171, 276
BseGI GGATG 2 cut(s) 167, 232
BseJI GATNNNNATC 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 2 cut(s) 33, 296
BsiHKCI CYCGRG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 2 cut(s) 287, 328
BsnI GGCC 2 cut(s) 33, 296
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 161
Bsp143I GATC 2 cut(s) 99, 408
BspANI GGCC 2 cut(s) 33, 296
BspCNI CTCAG 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 171, 276
BssMI GATC 2 cut(s) 99, 408
BssT1I CCWWGG 2 cut(s) 171, 276
Bst2UI CCWGG 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 244, 312
BstF5I GGATG 2 cut(s) 167, 232
BstKTI GATC 2 cut(s) 102, 411
BstMAI GTCTC 2 cut(s) 287, 328
BstMBI GATC 2 cut(s) 99, 408
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 2 cut(s) 308, 381
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 33, 296
BtsCI GGATG 2 cut(s) 167, 232
BtsIMutI CAGTG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 31, 364
CviAII CATG 3 cut(s) 290, 305, 378
CviJI RGCY 8 cut(s) 33, 89, 142, 166, 256, 296, 321, 395
CviKI_1 RGCY 8 cut(s) 33, 89, 142, 166, 256, 296, 321, 395
DdeI CTNAG 2 cut(s) 244, 312
DpnI GATC 2 cut(s) 101, 410
DpnII GATC 2 cut(s) 99, 408
Eco130I CCWWGG 2 cut(s) 171, 276
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 171, 276
EcoT22I ATGCAT 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 171, 276
FaeI CATG 3 cut(s) 293, 308, 381
FaiI YATR 8 cut(s) 36, 83, 134, 264, 291, 299, 306, 379
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FatI CATG 3 cut(s) 289, 304, 377
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 154, 239
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 192, 338
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 33, 296
Hin1II CATG 3 cut(s) 293, 308, 381
HinfI GANTC 2 cut(s) 240, 248
HphI GGTGA 1 cut(s) 362
Hpy188I TCNGA 5 cut(s) 64, 181, 313, 328, 392
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 122, 197, 213, 308
HpyF3I CTNAG 2 cut(s) 244, 312
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 3 cut(s) 293, 308, 381
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 2 cut(s) 99, 408
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 2 cut(s) 380, 398
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 206, 317
MaeI CTAG 2 cut(s) 192, 338
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 23
MalI GATC 2 cut(s) 101, 410
MboI GATC 2 cut(s) 99, 408
MluCI AATT 3 cut(s) 186, 341, 418
MlyI GAGTC 2 cut(s) 234, 257
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 1 cut(s) 286
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
NdeII GATC 2 cut(s) 99, 408
NlaIII CATG 3 cut(s) 293, 308, 381
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 2 cut(s) 308, 381
PaeR7I CTCGAG 1 cut(s) 161
PciI ACATGT 1 cut(s) 377
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 234, 256
PpsI GAGTC 2 cut(s) 234, 256
Ppu21I YACGTR 1 cut(s) 97
PscI ACATGT 1 cut(s) 377
PshBI ATTAAT 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspPI GGNCC 2 cut(s) 31, 364
PspXI VCTCGAGB 1 cut(s) 161
PstI CTGCAG 1 cut(s) 124
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 99, 408
Sau96I GGNCC 2 cut(s) 31, 364
SchI GAGTC 2 cut(s) 234, 257
ScrFI CCNGG 1 cut(s) 413
SetI ASST 6 cut(s) 10, 91, 99, 258, 369, 397
SfaNI GCATC 2 cut(s) 206, 317
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 161
SinI GGWCC 1 cut(s) 364
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 191
Sse9I AATT 3 cut(s) 186, 341, 418
SspMI CTAG 2 cut(s) 192, 338
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 2 cut(s) 171, 276
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 186, 341, 418
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 116, 149, 194
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 364
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 1 cut(s) 341
XceI RCATGY 2 cut(s) 308, 381
XhoI CTCGAG 1 cut(s) 161
XspI CTAG 2 cut(s) 192, 338
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.