Rh6BG109600

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0022788
Physical Location & Seq
Reverse (-)
17137665 .. 17138188
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG109600.1

Sequence Viewer

Length: 381 bp
ATGGGTTCAAAAACAATCTCTGATTGTGTTGAAGCACTTATAGGAGCTTATTACGTGATCAGTGGTGGATTGTCTTCTGCAGTTCATCTTATGAAGTGGCTCGGCATTGATGTAGAACTCGAGCCATCCTTGGTTTCGGAAGCAATTACTAGTGCATCACTTCATTCTTGCAACCCGAAAGTGGATGATGAGATTGGAATCTTAGAGTCAAAGCTCGGTTATGTTTGTTCTACCAAGGGTCTCTTACATGAGGCCATAACACATGCATCTGAGCGAGGCTACTCTTATGAGAGACTAGAATTTCTTGGTGATTGTGAGTTGGACCTGCTTATCACATGTATCTCTATCAGAGCTACAAAGATATTGATCCAGGCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

126

Amino Acids

13.58

Weight (kDa)

4.81

Isoelectric Point (pI)

19.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022788)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0262221
rosa_samantha Rh6BG109600 Rh6CG107100 Rh6DG097600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 333
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 2 cut(s) 9, 32
AhlI ACTAGT 1 cut(s) 149
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 3 cut(s) 47, 214, 353
AluI AGCT 3 cut(s) 47, 214, 353
Alw26I GTCTC 2 cut(s) 245, 286
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 66
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 371
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 245, 286
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 2 cut(s) 150, 296
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 2 cut(s) 164, 275
BpiI GAAGAC 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 55
BsaBI GATNNNNATC 2 cut(s) 197, 365
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 129, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse8I GATNNNNATC 2 cut(s) 197, 365
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 129, 234
BseGI GGATG 2 cut(s) 125, 190
BseJI GATNNNNATC 2 cut(s) 197, 365
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 261
BshFI GGCC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 2 cut(s) 245, 286
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 119
Bsp143I GATC 2 cut(s) 57, 366
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 262
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 333
BspPI GGATC 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 129, 234
BssMI GATC 2 cut(s) 57, 366
BssT1I CCWWGG 2 cut(s) 129, 234
Bst2UI CCWGG 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 202, 270
BstF5I GGATG 2 cut(s) 125, 190
BstKTI GATC 2 cut(s) 60, 369
BstMAI GTCTC 2 cut(s) 245, 286
BstMBI GATC 2 cut(s) 57, 366
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 2 cut(s) 266, 339
BstSCI CCNGG 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 2 cut(s) 125, 190
BtsIMutI CAGTG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 322
CviAII CATG 3 cut(s) 248, 263, 336
CviJI RGCY 7 cut(s) 47, 100, 124, 214, 254, 279, 353
CviKI_1 RGCY 7 cut(s) 47, 100, 124, 214, 254, 279, 353
DdeI CTNAG 2 cut(s) 202, 270
DpnI GATC 2 cut(s) 59, 368
DpnII GATC 2 cut(s) 57, 366
Eco130I CCWWGG 2 cut(s) 129, 234
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 2 cut(s) 129, 234
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 129, 234
FaeI CATG 3 cut(s) 251, 266, 339
FaiI YATR 8 cut(s) 41, 92, 222, 249, 257, 264, 288, 337
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 3 cut(s) 247, 262, 335
FbaI TGATCA 1 cut(s) 57
FokI GGATG 2 cut(s) 112, 197
FspBI CTAG 2 cut(s) 150, 296
HaeIII GGCC 1 cut(s) 254
Hin1II CATG 3 cut(s) 251, 266, 339
HinfI GANTC 2 cut(s) 198, 206
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 4 cut(s) 22, 139, 271, 350
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 80, 155, 171, 266
HpyF3I CTNAG 2 cut(s) 202, 270
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 3 cut(s) 251, 266, 339
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 57, 366
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 2 cut(s) 338, 356
LweI GCATC 2 cut(s) 164, 275
MaeI CTAG 2 cut(s) 150, 296
MaeII ACGT 1 cut(s) 54
MalI GATC 2 cut(s) 59, 368
MboI GATC 2 cut(s) 57, 366
MboII GAAGA 1 cut(s) 66
MluCI AATT 2 cut(s) 144, 299
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 2 cut(s) 244, 269
Mph1103I ATGCAT 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
NdeII GATC 2 cut(s) 57, 366
NlaIII CATG 3 cut(s) 251, 266, 339
NmeAIII GCCGAG 1 cut(s) 81
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 2 cut(s) 266, 339
PaeR7I CTCGAG 1 cut(s) 119
PciI ACATGT 1 cut(s) 335
PfeI GAWTC 1 cut(s) 198
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 55
PscI ACATGT 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspPI GGNCC 1 cut(s) 322
PspXI VCTCGAGB 1 cut(s) 119
PstI CTGCAG 1 cut(s) 82
Sau3AI GATC 2 cut(s) 57, 366
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 371
SetI ASST 5 cut(s) 49, 57, 216, 327, 355
SfaNI GCATC 2 cut(s) 164, 275
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 322
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 149
Sse9I AATT 2 cut(s) 144, 299
SspMI CTAG 2 cut(s) 150, 296
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 2 cut(s) 129, 234
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 144, 299
TfiI GAWTC 1 cut(s) 198
TscAI CASTG 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 74, 107, 152
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 1 cut(s) 299
XceI RCATGY 2 cut(s) 266, 339
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 2 cut(s) 150, 296
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.