RchiOBHm_Chr6g0262441

Protein of unknown function (DUF2985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020576
Physical Location & Seq
Forward (+)
17206090 .. 17206491
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGTGTGTTCATATTATGATATTTATTATGTTTTGCATGGCTCATTTCTGGATCTTTAACTTGGCTGCTGTTAATATTGACTATAAGACTGTTCGGGAGGCTCTTGCAGTTATTAGTATAATTCTCTGTGTTTTTGGTTTGCTCTATGGTGGCTTTTGCAGGATCCAAATGAGAAAGAGATTCAACTTGCCTTCTTATAACTTCTGTTTTGGTGAACCGGCAGTGTTTGATTGCACGTTGTGGCTTTTCTGTTGTTGGTGTTCTCTTGCTCAGGAAGTGAGAACAGAGAATACCTATGACATTGTAGAAGACAAGTTTTATAGAAAAGAAACAGATATTCCGAGTCAGCCACCAATGTTACCCTTGCCCCGTGAAGATGGAGTGGGTCAACTTATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 PLAC8

Protein Analysis

133

Amino Acids

15.53

Weight (kDa)

5.6

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 23 - 94 4.2e-08 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020576)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0262441
rosa_multiflora Rmu_sc0000361.1_g000025
rosa_samantha Rh6AG118300 Rh6BG112100 Rh6CG110200 Rh6DG099800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AclWI GGATC 3 cut(s) 59, 157, 170
AdeI CACNNNGTG 1 cut(s) 240
AgsI TTSAA 1 cut(s) 184
AlwI GGATC 3 cut(s) 59, 157, 170
ApeKI GCWGC 1 cut(s) 65
AseI ATTAAT 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 224
BamHI GGATCC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 371
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 217
BseMII CTCAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 218
Bsp143I GATC 2 cut(s) 51, 162
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 3 cut(s) 59, 157, 170
BsrFI RCCGGY 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 2 cut(s) 51, 162
Bst4CI ACNGT 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 270
BstKTI GATC 2 cut(s) 54, 165
BstMBI GATC 2 cut(s) 51, 162
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 2 cut(s) 51, 162
BstYI RGATCY 2 cut(s) 51, 162
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 217
CviAII CATG 1 cut(s) 37
CviJI RGCY 6 cut(s) 41, 65, 101, 153, 244, 349
CviKI_1 RGCY 6 cut(s) 41, 65, 101, 153, 244, 349
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 53, 164
DpnII GATC 2 cut(s) 51, 162
DraIII CACNNNGTG 1 cut(s) 240
FaeI CATG 1 cut(s) 40
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HapII CCGG 1 cut(s) 218
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 389
HindII GTYRAC 1 cut(s) 389
HinfI GANTC 2 cut(s) 180, 343
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 215, 389
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 3 cut(s) 49, 95, 272
Hpy8I GTNNAC 2 cut(s) 215, 389
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 36, 107, 159, 234
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 51, 162
LpnPI CCDG 4 cut(s) 34, 145, 231, 257
Lsp1109I GCAGC 1 cut(s) 52
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 357
MalI GATC 2 cut(s) 53, 164
MboI GATC 2 cut(s) 51, 162
MboII GAAGA 2 cut(s) 320, 386
MflI RGATCY 2 cut(s) 51, 162
MluCI AATT 2 cut(s) 120, 397
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 1 cut(s) 91
MseI TTAA 3 cut(s) 57, 72, 396
MspI CCGG 1 cut(s) 218
NdeII GATC 2 cut(s) 51, 162
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PshBI ATTAAT 1 cut(s) 396
PsiI TTATAA 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 164
PsrI GAACNNNNNNTAC 2 cut(s) 274, 306
PsuI RGATCY 2 cut(s) 51, 162
SaqAI TTAA 3 cut(s) 57, 72, 396
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 51, 162
SchI GAGTC 1 cut(s) 352
SetI ASST 2 cut(s) 239, 296
Sse9I AATT 2 cut(s) 120, 397
SspI AATATT 1 cut(s) 76
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 239
TasI AATT 2 cut(s) 120, 397
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 3 cut(s) 57, 72, 396
Tru9I TTAA 3 cut(s) 57, 72, 396
TscAI CASTG 1 cut(s) 228
TseI GCWGC 1 cut(s) 65
TspRI CASTG 1 cut(s) 228
VspI ATTAAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.