Rmu_sc0000361.1_g000025

Protein of unknown function (DUF2985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000361.1
OG0020576
Physical Location & Seq
Forward (+)
125220 .. 125654
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000361.1_g000025.1.cds

Sequence Viewer

Length: 435 bp
atggctcctttctggatctttaacttggctgctgttaatattgactatgagactgttcgagaggctcttgcagttattagtataattctctgtgtttttggtttgctctatggtggcttttggaggatccaaatgagaaagagattcaacttgccttcttataacttctgttttggtgaaccggcagcatttgattgtacgttgtggcttttttgttgttggtgttctcttgctcaggaagtgagaacagggaatacctatgacattgtagaagacaagttttgtagaaaagaaacagatattccgagtcagccaccaatgtcaccctctacaaaaaataattcaattggctacagcaaagggccacggcgcagatttgccgtagctaatggtcctcctttaacgactgcaattactgccgccgcgaactcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 PLAC8

Protein Analysis

144

Amino Acids

16.19

Weight (kDa)

8.51

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020576)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0262441
rosa_multiflora Rmu_sc0000361.1_g000025
rosa_samantha Rh6AG118300 Rh6BG112100 Rh6CG110200 Rh6DG099800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AccII CGCG 1 cut(s) 425
AciI CCGC 2 cut(s) 420, 423
AclWI GGATC 3 cut(s) 23, 121, 134
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 2 cut(s) 148, 345
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 3 cut(s) 23, 121, 134
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 29, 185
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 362, 392
AsuHPI GGTGA 2 cut(s) 188, 315
AvaII GGWCC 1 cut(s) 392
BamHI GGATCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 16, 197
BceAI ACGGC 2 cut(s) 365, 383
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 352
BisI GCNGC 4 cut(s) 30, 186, 420, 423
BlsI GCNGC 4 cut(s) 31, 187, 421, 424
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 362, 392
BmiI GGNNCC 2 cut(s) 6, 128
BpiI GAAGAC 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 365
Bse118I RCCGGY 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 16, 197
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 15, 126
BspACI CCGC 2 cut(s) 420, 423
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 2 cut(s) 6, 128
BspPI GGATC 3 cut(s) 23, 121, 134
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 2 cut(s) 15, 126
Bst4CI ACNGT 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 416
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 365
BstFNI CGCG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 2 cut(s) 18, 129
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 15, 126
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 352
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 16, 197
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 15, 126
BstYI RGATCY 2 cut(s) 15, 126
BsuRI GGCC 1 cut(s) 364
BtgI CCRYGG 1 cut(s) 365
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 362, 392
Csp6I GTAC 1 cut(s) 198
CviJI RGCY 9 cut(s) 5, 29, 65, 117, 208, 313, 351, 364, 386
CviKI_1 RGCY 9 cut(s) 5, 29, 65, 117, 208, 313, 351, 364, 386
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 17, 128
DpnII GATC 2 cut(s) 15, 126
Eco47I GGWCC 1 cut(s) 392
FaiI YATR 6 cut(s) 48, 83, 111, 162, 261, 433
Fnu4HI GCNGC 4 cut(s) 30, 186, 420, 423
Fsp4HI GCNGC 4 cut(s) 30, 186, 420, 423
GlaI GCGC 1 cut(s) 371
GluI GCNGC 4 cut(s) 30, 186, 420, 423
HaeIII GGCC 1 cut(s) 364
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 372
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HinfI GANTC 2 cut(s) 144, 307
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 188, 315
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 13, 59, 236
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 71, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 200
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 2 cut(s) 15, 126
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 195, 221, 234
Lsp1109I GCAGC 2 cut(s) 16, 197
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 321
MalI GATC 2 cut(s) 17, 128
MboI GATC 2 cut(s) 15, 126
MboII GAAGA 1 cut(s) 284
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 15, 126
MluCI AATT 4 cut(s) 84, 340, 345, 411
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 4 cut(s) 55, 117, 337, 405
MseI TTAA 3 cut(s) 21, 36, 401
MspI CCGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 345
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeII GATC 2 cut(s) 15, 126
NlaIV GGNNCC 2 cut(s) 6, 128
NmuCI GTSAC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 31, 187, 421, 424
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PsiI TTATAA 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 6, 128
PspPI GGNCC 2 cut(s) 362, 392
PsrI GAACNNNNNNTAC 2 cut(s) 238, 270
PsuI RGATCY 2 cut(s) 15, 126
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 21, 36, 401
SatI GCNGC 4 cut(s) 30, 186, 420, 423
Sau3AI GATC 2 cut(s) 15, 126
Sau96I GGNCC 2 cut(s) 362, 392
SchI GAGTC 1 cut(s) 316
SetI ASST 3 cut(s) 203, 260, 388
SfcI CTRYAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 392
Sse9I AATT 4 cut(s) 84, 340, 345, 411
SsiI CCGC 2 cut(s) 420, 423
SspI AATATT 1 cut(s) 40
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 58
TasI AATT 4 cut(s) 84, 340, 345, 411
TauI GCSGC 2 cut(s) 422, 425
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 3 cut(s) 21, 36, 401
Tru9I TTAA 3 cut(s) 21, 36, 401
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 2 cut(s) 29, 185
Tsp45I GTSAC 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.