Rh6AG118300

Protein of unknown function (DUF2985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0020576
Physical Location & Seq
Forward (+)
17791103 .. 17791468
366 bp
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UTR
Exon/CDS
Intron
Rh6AG118300.1

Sequence Viewer

Length: 366 bp
ATGGCTCCTTTCTGGATCTTTAACTTGGCTGCTGTTAATATTGACTATGAGACTGTTCGGGAGGCTCTTGCAGTTATTAGTATAATTCTCTGTGTTTTTGGTTTGCTCTATGGTGGCTTTTGGAGGATCCAAATGAGAAAGAGATTCAACTTGCCTTCTTATAACTTCTGTTTTGGTGAACCGGCAGTATTTGATTGCACGTTGTGGCTTTTCTGTTGTTGGTGTTCTCTTGCTCAGGAAGTGAGAACAGGGAATACCTATGACATTGTAGAAGACAAGTTTTGTAGAAAAGAAACAGATATTCCGAGTCAGCCACCAATGTCACCCTTGCCCCGTGAAGATGGAGTGGGTCAACTTATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 PLAC8

Protein Analysis

121

Amino Acids

13.94

Weight (kDa)

4.82

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 26 - 82 7.2e-11 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020576)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0262441
rosa_multiflora Rmu_sc0000361.1_g000025
rosa_samantha Rh6AG118300 Rh6BG112100 Rh6CG110200 Rh6DG099800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AclWI GGATC 3 cut(s) 23, 121, 134
AdeI CACNNNGTG 1 cut(s) 204
AgsI TTSAA 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 3 cut(s) 23, 121, 134
ApeKI GCWGC 1 cut(s) 29
AseI ATTAAT 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 188, 315
BamHI GGATCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 44
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 6, 128
BpiI GAAGAC 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 181
BseMII CTCAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 15, 126
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 6, 128
BspPI GGATC 3 cut(s) 23, 121, 134
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssMI GATC 2 cut(s) 15, 126
Bst4CI ACNGT 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 2 cut(s) 18, 129
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 15, 126
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 15, 126
BstYI RGATCY 2 cut(s) 15, 126
Cfr10I RCCGGY 1 cut(s) 181
CviJI RGCY 6 cut(s) 5, 29, 65, 117, 208, 313
CviKI_1 RGCY 6 cut(s) 5, 29, 65, 117, 208, 313
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 17, 128
DpnII GATC 2 cut(s) 15, 126
DraIII CACNNNGTG 1 cut(s) 204
FaiI YATR 5 cut(s) 48, 83, 111, 162, 261
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HapII CCGG 1 cut(s) 182
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 2 cut(s) 144, 307
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 188, 315
Hpy166II GTNNAC 2 cut(s) 179, 353
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 13, 59, 236
Hpy8I GTNNAC 2 cut(s) 179, 353
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 71, 198
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 200
Kzo9I GATC 2 cut(s) 15, 126
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 195, 221, 234
Lsp1109I GCAGC 1 cut(s) 16
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 321
MalI GATC 2 cut(s) 17, 128
MboI GATC 2 cut(s) 15, 126
MboII GAAGA 2 cut(s) 284, 350
MflI RGATCY 2 cut(s) 15, 126
MluCI AATT 2 cut(s) 84, 361
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 2 cut(s) 55, 117
MseI TTAA 3 cut(s) 21, 36, 360
MspI CCGG 1 cut(s) 182
NdeII GATC 2 cut(s) 15, 126
NlaIV GGNNCC 2 cut(s) 6, 128
NmuCI GTSAC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PshBI ATTAAT 1 cut(s) 360
PsiI TTATAA 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 6, 128
PsrI GAACNNNNNNTAC 2 cut(s) 238, 270
PsuI RGATCY 2 cut(s) 15, 126
SaqAI TTAA 3 cut(s) 21, 36, 360
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 15, 126
SchI GAGTC 1 cut(s) 316
SetI ASST 2 cut(s) 203, 260
Sse9I AATT 2 cut(s) 84, 361
SspI AATATT 1 cut(s) 40
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 203
TasI AATT 2 cut(s) 84, 361
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 3 cut(s) 21, 36, 360
Tru9I TTAA 3 cut(s) 21, 36, 360
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 321
VspI ATTAAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.