RchiOBHm_Chr6g0264741

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
20071681 .. 20072298
618 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGGCCGGTGGTGGTGGCGCAGGAAGCAGAGAGCTCGATCAGACGCCAACGTGGGCTGTCGCCGGTGTCTGTTTCAGCATCATTCTCATTTCTATAGTTTTGGAAAAGGTTCTTCACCTGGTTGGACATCTTATGGTTTTGGGATTCGTTTCTTTGCTACTGACATTTTTTCAAAAGCACATCGCTGAAATTTGCATTTCTGAAGGCTTTGCAGATACAATGTTGCCTTGTCCTTACAGAAATGGCCCTGATAATCACGGTGGTGGTGACAAAGGTGGTGGAGGAGGAGGTCATCGCAGGCATTTATGGTGTGAGCAGGAGGGCAGAATTTTAGCTGGTGGTACTTGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

12.27

Weight (kDa)

6.27

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 10 - 43 4.4e-09 Mlo family
Mlo PF03094 43 - 106 6.2e-12 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025067)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0264741
rosa_multiflora Rmu_co8355319.1_g000001
rosa_samantha Rh7BG289800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 189, 327
AcuI CTGAAG 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 343
AgsI TTSAA 1 cut(s) 173
AjnI CCWGG 1 cut(s) 117
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 2 cut(s) 34, 335
AluI AGCT 2 cut(s) 34, 335
Alw21I GWGCWC 1 cut(s) 36
AoxI GGCC 2 cut(s) 3, 244
ApoI RAATTY 2 cut(s) 189, 327
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 107, 278
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 44
Bse118I RCCGGY 2 cut(s) 5, 62
BseBI CCWGG 1 cut(s) 119
BseRI GAGGAG 2 cut(s) 297, 300
BshFI GGCC 2 cut(s) 5, 246
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 6, 63
BsnI GGCC 2 cut(s) 5, 246
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 2 cut(s) 5, 246
BsrFI RCCGGY 2 cut(s) 5, 62
BssAI RCCGGY 2 cut(s) 5, 62
BssMI GATC 1 cut(s) 37
BssNI GRCGYC 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 299
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 93
BsuRI GGCC 2 cut(s) 5, 246
BtgZI GCGATG 2 cut(s) 166, 278
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 2 cut(s) 5, 62
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 1 cut(s) 52
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 342
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviJI RGCY 6 cut(s) 5, 34, 56, 207, 246, 335
CviKI_1 RGCY 6 cut(s) 5, 34, 56, 207, 246, 335
CviQI GTAC 1 cut(s) 342
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 36
FaiI YATR 3 cut(s) 95, 134, 307
FriOI GRGCYC 1 cut(s) 36
GlaI GCGC 1 cut(s) 19
HaeIII GGCC 2 cut(s) 5, 246
HapII CCGG 2 cut(s) 6, 63
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 44
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 1 cut(s) 144
HpaII CCGG 2 cut(s) 6, 63
HphI GGTGA 2 cut(s) 107, 278
Hpy188I TCNGA 2 cut(s) 42, 202
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 195, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 44
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 9 cut(s) 6, 19, 76, 104, 131, 261, 283, 302, 321
LweI GCATC 1 cut(s) 87
MabI ACCWGGT 1 cut(s) 117
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 189, 327
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 4 cut(s) 275, 278, 281, 313
MroXI GAANNNNTTC 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 2 cut(s) 6, 63
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspPI GGNCC 1 cut(s) 245
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 36
SetI ASST 7 cut(s) 36, 53, 111, 120, 277, 292, 337
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 2 cut(s) 189, 327
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 36
TasI AATT 2 cut(s) 189, 327
TfiI GAWTC 1 cut(s) 144
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
XapI RAATTY 2 cut(s) 189, 327
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.