Rmu_co8355319.1_g000001

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8355319.1
Physical Location & Seq
Forward (+)
1 .. 590
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8355319.1_g000001.1.cds

Sequence Viewer

Length: 260 bp
agattatggttttgcgattcatttctttgctactgacattttttcaaaagcacatcgctcatatttgccttactgaaggcattgcagatacaatgttgccttgtccttacagaaatggccctgataatcacggtgatggtgacgaaggtggtggaggaggaggtcatcgcaggcttttatggtatgagcaggagcgcagaattttagctggtggtgatagctctgatcaggcatactgtactaggaaggtaattaagtaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.49

Weight (kDa)

7.07

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025067)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0264741
rosa_multiflora Rmu_co8355319.1_g000001
rosa_samantha Rh7BG289800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 2 cut(s) 208, 221
AluI AGCT 2 cut(s) 208, 221
AoxI GGCC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 200
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 3 cut(s) 145, 151, 226
BccI CCATC 1 cut(s) 130
BclI TGATCA 1 cut(s) 225
BfaI CTAG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 80
BseRI GAGGAG 2 cut(s) 170, 173
BshFI GGCC 1 cut(s) 119
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 225
BspANI GGCC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 80
BssMI GATC 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 133, 238
BstC8I GCNNGC 1 cut(s) 172
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 119
BtgZI GCGATG 2 cut(s) 39, 151
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 239
CviJI RGCY 4 cut(s) 119, 174, 208, 221
CviKI_1 RGCY 4 cut(s) 119, 174, 208, 221
CviQI GTAC 1 cut(s) 239
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 95
FaiI YATR 5 cut(s) 7, 62, 180, 185, 234
FbaI TGATCA 1 cut(s) 225
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 119
HhaI GCGC 1 cut(s) 197
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 1 cut(s) 17
HphI GGTGA 3 cut(s) 145, 151, 226
Hpy188I TCNGA 1 cut(s) 225
HpyAV CCTTC 3 cut(s) 70, 139, 240
HpyCH4III ACNGT 2 cut(s) 133, 238
HpyCH4V TGCA 1 cut(s) 85
HspAI GCGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 5 cut(s) 134, 156, 175, 194, 214
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 139
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MluCI AATT 2 cut(s) 200, 251
MnlI CCTC 3 cut(s) 148, 151, 154
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 134
NdeII GATC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 118
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 254
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 118
SetI ASST 5 cut(s) 150, 165, 210, 223, 251
SgeI CNNG 8 cut(s) 113, 133, 142, 183, 202, 221, 241, 254
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 2 cut(s) 200, 251
SspMI CTAG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 133, 238
TasI AATT 2 cut(s) 200, 251
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 9
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.