Rh7BG289800

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0025067
Physical Location & Seq
Forward (+)
27218588 .. 27220378
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG289800.1

Sequence Viewer

Length: 642 bp
ATGGCCGGTGGTGGTGGCGCAGGCAGCAGAGAGCTCGATCAGACGCCGACGTGGGCTGTCGCCGGTGTCTGTTTCACTATCATTCTTATTTCTATAGTTTTGGAAAAGGTTCTTCACCTGGTTGGACATTGGTTTGAACATAGAAAAAAAGCCGGTTTGCTTGAAGCTCTAGAGATAGTTAAAGCAGAGCTTATGGTTTTGGGATTCATTTCTTTGCTACTGACATTTTTTCAAAAGCACATCGCTCATATTTGCATTACCGAAGGCTTTGCAGATACAATGTTGCCTTGTCCTTACAGAAATGGCCCTGATGATCACGGTGGTGGTGACAAAGGTGGTGATCACAAGGGTGGTGGTGACAAAGGTGGTGGAGGAGGAGGTCATCGCAGGCTTTTATGGTATGAGCAGGAGCGCAGAATTTTAGCTGGTGGTGATAGCTCTGATCTGCTATACTGTACTAACCGGGGATTAGTGCCGCTTATCTCTATAAATGGATTACATCAGTTGCACATCTTCATCTTCTTCTTAGCAGTATTTCACGTTATATATGGTGCCATAACCATGACACTAGGAAGATTAAAGATTCGTAGATGGAAGCAGTGGGAACGAGAAGCTGCAAATGATAGTGAATTCAATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

213

Amino Acids

23.42

Weight (kDa)

7.18

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 10 - 207 1.4e-67 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025067)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0264741
rosa_multiflora Rmu_co8355319.1_g000001
rosa_samantha Rh7BG289800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 551
AciI CCGC 1 cut(s) 476
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 417, 629
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 457
AgsI TTSAA 4 cut(s) 137, 164, 233, 634
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 117
AleI CACNNNNGTG 2 cut(s) 321, 348
AluBI AGCT 6 cut(s) 34, 167, 190, 425, 438, 614
AluI AGCT 6 cut(s) 34, 167, 190, 425, 438, 614
Alw21I GWGCWC 1 cut(s) 36
AoxI GGCC 2 cut(s) 3, 304
ApeKI GCWGC 2 cut(s) 24, 614
ApoI RAATTY 2 cut(s) 417, 629
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 20, 414
AspS9I GGNCC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 5 cut(s) 107, 338, 350, 368, 443
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 36, 601
BccI CCATC 1 cut(s) 585
BcgI CGANNNNNNTGC 4 cut(s) 16, 50, 251, 285
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 2 cut(s) 313, 340
BcnI CCSGG 1 cut(s) 464
BfaI CTAG 2 cut(s) 170, 569
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 3 cut(s) 25, 476, 615
BlsI GCNGC 3 cut(s) 26, 477, 616
Bme1390I CCNGG 2 cut(s) 119, 464
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 2 cut(s) 119, 464
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 463
Bse118I RCCGGY 3 cut(s) 5, 62, 152
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 387, 390
BseXI GCAGC 2 cut(s) 36, 601
BshFI GGCC 2 cut(s) 5, 306
BshNI GGYRCC 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 4 cut(s) 6, 63, 153, 463
BsnI GGCC 2 cut(s) 5, 306
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 4 cut(s) 37, 313, 340, 442
BspACI CCGC 1 cut(s) 476
BspANI GGCC 2 cut(s) 5, 306
BspLI GGNNCC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 551
BsrFI RCCGGY 3 cut(s) 5, 62, 152
BssAI RCCGGY 3 cut(s) 5, 62, 152
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 4 cut(s) 37, 313, 340, 442
BssNI GRCGYC 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 320, 455
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 22, 389
BstDEI CTNAG 1 cut(s) 526
BstHHI GCGC 2 cut(s) 20, 414
BstKTI GATC 4 cut(s) 40, 316, 343, 445
BstMBI GATC 4 cut(s) 37, 313, 340, 442
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 117, 462
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 36, 601
BsuRI GGCC 2 cut(s) 5, 306
BtgZI GCGATG 2 cut(s) 226, 368
BtrI CACGTC 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 1 cut(s) 605
Cac8I GCNNGC 2 cut(s) 22, 389
CfoI GCGC 2 cut(s) 20, 414
Cfr10I RCCGGY 3 cut(s) 5, 62, 152
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 1 cut(s) 52
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 456
CspCI CAANNNNNGTGG 4 cut(s) 334, 349, 369, 384
CviAII CATG 1 cut(s) 562
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 1 cut(s) 526
DpnI GATC 4 cut(s) 39, 315, 342, 444
DpnII GATC 4 cut(s) 37, 313, 340, 442
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 1 cut(s) 565
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 1 cut(s) 561
FbaI TGATCA 2 cut(s) 313, 340
Fnu4HI GCNGC 3 cut(s) 25, 476, 615
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 25, 476, 615
FspBI CTAG 2 cut(s) 170, 569
GlaI GCGC 2 cut(s) 19, 413
GluI GCNGC 3 cut(s) 25, 476, 615
HaeIII GGCC 2 cut(s) 5, 306
HapII CCGG 4 cut(s) 6, 63, 153, 463
HgaI GACGC 1 cut(s) 52
HhaI GCGC 2 cut(s) 20, 414
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 565
Hin6I GCGC 2 cut(s) 18, 412
HinP1I GCGC 2 cut(s) 18, 412
HinfI GANTC 2 cut(s) 204, 583
HpaII CCGG 4 cut(s) 6, 63, 153, 463
HphI GGTGA 5 cut(s) 107, 338, 350, 368, 443
Hpy188I TCNGA 2 cut(s) 42, 442
Hpy188III TCNNGA 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 320, 455
HpyCH4IV ACGT 2 cut(s) 50, 540
HpyCH4V TGCA 4 cut(s) 255, 272, 508, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 526
HpySE526I ACGT 2 cut(s) 50, 540
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 565
HspAI GCGC 2 cut(s) 18, 412
Ksp22I TGATCA 2 cut(s) 313, 340
Kzo9I GATC 4 cut(s) 37, 313, 340, 442
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 2 cut(s) 36, 601
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 2 cut(s) 170, 569
MaeII ACGT 2 cut(s) 50, 540
MaeIII GTNAC 2 cut(s) 326, 356
MalI GATC 4 cut(s) 39, 315, 342, 444
MboI GATC 4 cut(s) 37, 313, 340, 442
MboII GAAGA 5 cut(s) 104, 505, 511, 514, 585
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 417, 629
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 3 cut(s) 365, 368, 371
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 3 cut(s) 180, 578, 640
MslI CAYNNNNRTG 3 cut(s) 321, 348, 560
MspI CCGG 4 cut(s) 6, 63, 153, 463
MspR9I CCNGG 2 cut(s) 119, 464
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 464
NdeII GATC 4 cut(s) 37, 313, 340, 442
NlaIII CATG 1 cut(s) 565
NlaIV GGNNCC 1 cut(s) 553
NmuCI GTSAC 2 cut(s) 326, 356
OliI CACNNNNGTG 2 cut(s) 321, 348
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 204, 583
PkrI GCNGC 3 cut(s) 26, 477, 616
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 553
PspPI GGNCC 1 cut(s) 305
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
RseI CAYNNNNRTG 3 cut(s) 321, 348, 560
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 180, 578, 640
SatI GCNGC 3 cut(s) 25, 476, 615
Sau3AI GATC 4 cut(s) 37, 313, 340, 442
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 119, 464
SduI GDGCHC 1 cut(s) 36
SexAI ACCWGGT 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 62
SmiMI CAYNNNNRTG 3 cut(s) 321, 348, 560
Sse9I AATT 2 cut(s) 417, 629
SsiI CCGC 1 cut(s) 476
SspMI CTAG 2 cut(s) 170, 569
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 117, 462
TaaI ACNGT 2 cut(s) 320, 455
TaiI ACGT 2 cut(s) 53, 543
TaqI TCGA 1 cut(s) 36
TasI AATT 2 cut(s) 417, 629
TatI WGTACW 1 cut(s) 455
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 2 cut(s) 204, 583
Tru1I TTAA 3 cut(s) 180, 578, 640
Tru9I TTAA 3 cut(s) 180, 578, 640
TscAI CASTG 1 cut(s) 605
TseFI GTSAC 2 cut(s) 326, 356
TseI GCWGC 2 cut(s) 24, 614
Tsp45I GTSAC 2 cut(s) 326, 356
TspDTI ATGAA 2 cut(s) 196, 505
TspRI CASTG 1 cut(s) 605
XapI RAATTY 2 cut(s) 417, 629
XbaI TCTAGA 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 2 cut(s) 170, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.