RchiOBHm_Chr6g0265711

FtsJ-like methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
21636540 .. 21638929
2390 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGCCTCGTTGTTGTCATCGCCACCTTCATCCGGTCTTTTGCTCCCGCAAACTTTTAAGAGACGATGAAGAAGAACCCAATACACAAAAGGCCTTTACCTTTTCGCTCCCATTTCTTTGTTTTTTGAGTAAAATATTGGTGGATGGGAAGGTGGTCAACAAAGCATGTACTCTAGTATCTGATAAATCTGTTGTAAAGAATATGGCTGAAGTCCCCAAATATGTATCTAGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.95

Weight (kDa)

9.14

Isoelectric Point (pI)

57.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025068)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0265711
rosa_roxburghii Rroxscaffold_1G00002680
rosa_rugosa Rorug02G0152700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 54
AoxI GGCC 1 cut(s) 90
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 2 cut(s) 173, 228
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 28, 148
BseLI CCNNNNNNNGG 1 cut(s) 31
BshFI GGCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 54
BsmBI CGTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 92
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 92
BstF5I GGATG 2 cut(s) 28, 148
BstMAI GTCTC 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 168
BsuRI GGCC 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 2
BtsCI GGATG 2 cut(s) 28, 148
Csp6I GTAC 1 cut(s) 168
CviAII CATG 1 cut(s) 165
CviJI RGCY 2 cut(s) 92, 206
CviKI_1 RGCY 2 cut(s) 92, 206
CviQI GTAC 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 54
FaeI CATG 1 cut(s) 168
FaiI YATR 4 cut(s) 166, 203, 222, 235
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 164
FauI CCCGC 1 cut(s) 53
FokI GGATG 2 cut(s) 15, 155
FspBI CTAG 2 cut(s) 173, 228
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 32
Hin1II CATG 1 cut(s) 168
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 35, 142
Hsp92II CATG 1 cut(s) 168
LmnI GCTCC 2 cut(s) 47, 111
LpnPI CCDG 1 cut(s) 45
MaeI CTAG 2 cut(s) 173, 228
MboII GAAGA 2 cut(s) 80, 83
MnlI CCTC 1 cut(s) 15
MseI TTAA 1 cut(s) 56
MspI CCGG 1 cut(s) 32
NlaIII CATG 1 cut(s) 168
NspI RCATGY 1 cut(s) 168
PceI AGGCCT 1 cut(s) 92
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 56
SetI ASST 3 cut(s) 27, 101, 153
SgeI CNNG 5 cut(s) 18, 44, 57, 177, 185
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 1 cut(s) 46
SspI AATATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 173, 228
StuI AGGCCT 1 cut(s) 92
TatI WGTACW 1 cut(s) 167
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 17, 81
XceI RCATGY 1 cut(s) 168
XspI CTAG 2 cut(s) 173, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.