Rorug02G0152700

FtsJ-like methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0025068
Physical Location & Seq
Forward (+)
13520193 .. 13522149
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0152700.1

Sequence Viewer

Length: 990 bp
ATGAGAATGTATACTCTAGGTTCAGTTCCGAGTTCCGACTACGATTTGGACACCGAAGAATATCTTGGAAGTGGAGCAAATGGAGTTGTAGTTTGCTGCAAAAACCGGTTGGATGAAAAAACGTATGCTATAAAGAAAATCTCAGTATTCGTTGATGAGGATTTCCCATTTGATGAACTCATGAGGGAGGCTGTCATTTTATCCAAGTTCAATAACCCTGCAATTGTCCGATACCATTCGGTATGGATTGAGCCTACTTTTGTTGGCATAACTGGAGATCCTCAAAAACCAACGGAAGAGCATCCAGTTGAGACAGACCAACCATGCCTGTACATTCAGCAGGAGCTATGTGACTGCACGGTAGAGCAAAAGATGAAGGCTGGAGCACTTACGCTGGAAGAATGTGCACACATTTTCTTGGAAACCGCAAAAGGCCTGAAACACATTCATGGTCACAATATCATGCATGGAGACATTAAGAAGGCAAATATATTCTTCAGCAACGGCCTGCTGAAAATTGGAGATTTTGGCCTCGCCCAGGAAATAGGCGATGGTACAAATGAGATTAAAACCAGACCTCCATACTCAGCACCTGATGAACTGGTTAATGCAAAAGCTGATGTGTTTAGTTTGGGTATTCTGCTGGTTGAGATGCTACTTAACAGTACTGGAGGACATAAAGCATCTGAGGTAATTCGTATGCTGACAAAACGAGGAAAAGCAGAGCTTCCTGACAGCTGGCCTGATGGCTTACTAAAGACATGGGTGATGAGGATGCTAAAAAAGGAACCATCACAGAGACCTTCATCATCAAGGATAAGGAAGAAGAAAGTAGAAATAGAGGATGCTATTCTCAAGTTTCATCTGAAAAAGAAGCAGAAGGTACATGCTACTGCCAAAAAGCAGATTGAAGGTATGCAGCGCAAACACAGGAAGCCTAAGAATGTCAAAGGTAAAGTTCAAAGACACAGAAGGCATAGTCTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FtsJ S4

Protein Analysis

329

Amino Acids

37.25

Weight (kDa)

9.09

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 17 - 275 2.5e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 18 - 276 1.5e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025068)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0265711
rosa_roxburghii Rroxscaffold_1G00002680
rosa_rugosa Rorug02G0152700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 11, 982
AciI CCGC 1 cut(s) 426
AclWI GGATC 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 481
AfaI GTAC 4 cut(s) 332, 556, 667, 885
AfiI CCNNNNNNNGG 1 cut(s) 538
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 3 cut(s) 211, 911, 962
AjnI CCWGG 1 cut(s) 537
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 4 cut(s) 346, 617, 727, 738
AluI AGCT 4 cut(s) 346, 617, 727, 738
Alw21I GWGCWC 2 cut(s) 388, 409
Alw26I GTCTC 3 cut(s) 305, 465, 793
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 4 cut(s) 433, 505, 529, 740
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 96, 919
AsiGI ACCGGT 1 cut(s) 105
AspLEI GCGC 1 cut(s) 924
AsuHPI GGTGA 1 cut(s) 778
BaeGI GKGCMC 1 cut(s) 409
Bbv12I GWGCWC 2 cut(s) 388, 409
BbvI GCAGC 2 cut(s) 83, 931
BccI CCATC 3 cut(s) 545, 740, 799
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 305, 465, 793
BfaI CTAG 1 cut(s) 17
BisI GCNGC 2 cut(s) 97, 920
BlsI GCNGC 2 cut(s) 98, 921
BmcAI AGTACT 1 cut(s) 667
Bme1390I CCNGG 1 cut(s) 539
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 5 cut(s) 310, 642, 692, 765, 835
BpmI CTGGAG 3 cut(s) 294, 402, 690
BpuEI CTTGAG 1 cut(s) 839
BsaI GGTCTC 1 cut(s) 793
BsaJI CCNNGG 1 cut(s) 537
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 562, 592
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 4 cut(s) 277, 305, 606, 673
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 4 cut(s) 118, 301, 780, 850
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMII CTCAG 3 cut(s) 156, 600, 678
BseNI ACTGG 4 cut(s) 277, 305, 606, 673
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 2 cut(s) 83, 931
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 4 cut(s) 435, 507, 531, 742
BshTI ACCGGT 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 388, 409
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 3 cut(s) 305, 465, 793
BsnI GGCC 4 cut(s) 435, 507, 531, 742
Bso31I GGTCTC 1 cut(s) 793
Bsp1286I GDGCHC 2 cut(s) 388, 409
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 1 cut(s) 426
BspANI GGCC 4 cut(s) 435, 507, 531, 742
BspCNI CTCAG 3 cut(s) 155, 599, 679
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 789
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 793
BsrFI RCCGGY 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 4 cut(s) 277, 305, 606, 673
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 1 cut(s) 277
BssNAI GTATAC 1 cut(s) 12
Bst1107I GTATAC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 3 cut(s) 361, 665, 987
Bst6I CTCTTC 1 cut(s) 291
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 509, 740
BstDEI CTNAG 4 cut(s) 142, 586, 687, 939
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 4 cut(s) 118, 301, 780, 850
BstHHI GCGC 1 cut(s) 924
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 3 cut(s) 305, 465, 793
BstMBI GATC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 890
BstSCI CCNGG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 83, 931
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZ17I GTATAC 1 cut(s) 12
BsuRI GGCC 4 cut(s) 435, 507, 531, 742
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 4 cut(s) 118, 301, 780, 850
Cac8I GCNNGC 2 cut(s) 509, 740
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 924
Cfr10I RCCGGY 1 cut(s) 105
Csp6I GTAC 4 cut(s) 331, 555, 666, 884
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 7 cut(s) 181, 324, 449, 463, 467, 762, 887
CviQI GTAC 4 cut(s) 331, 555, 666, 884
DdeI CTNAG 4 cut(s) 142, 586, 687, 939
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 435
Eco31I GGTCTC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 481
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 468
FaeI CATG 7 cut(s) 184, 327, 452, 466, 470, 765, 890
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 711, 743
FatI CATG 7 cut(s) 180, 323, 448, 462, 466, 761, 886
FblI GTMKAC 2 cut(s) 11, 982
Fnu4HI GCNGC 2 cut(s) 97, 920
FokI GGATG 4 cut(s) 125, 288, 787, 857
Fsp4HI GCNGC 2 cut(s) 97, 920
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 923
GluI GCNGC 2 cut(s) 97, 920
GsuI CTGGAG 3 cut(s) 294, 402, 690
HaeIII GGCC 4 cut(s) 435, 507, 531, 742
HapII CCGG 1 cut(s) 106
HhaI GCGC 1 cut(s) 924
Hin1II CATG 7 cut(s) 184, 327, 452, 466, 470, 765, 890
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 3 cut(s) 12, 407, 983
Hpy188I TCNGA 5 cut(s) 30, 37, 230, 688, 867
Hpy188III TCNNGA 2 cut(s) 181, 731
Hpy8I GTNNAC 3 cut(s) 12, 407, 983
HpyAV CCTTC 6 cut(s) 370, 475, 813, 874, 905, 966
HpyCH4III ACNGT 3 cut(s) 361, 665, 987
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 7 cut(s) 99, 221, 357, 407, 466, 611, 919
HpyF3I CTNAG 4 cut(s) 142, 586, 687, 939
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 7 cut(s) 184, 327, 452, 466, 470, 765, 890
HspAI GCGC 1 cut(s) 922
Kzo9I GATC 1 cut(s) 277
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 3 cut(s) 74, 343, 383
Lsp1109I GCAGC 2 cut(s) 83, 931
LweI GCATC 5 cut(s) 310, 642, 692, 765, 835
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 350, 452
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 6 cut(s) 68, 308, 410, 487, 835, 838
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 388, 409
MluCI AATT 3 cut(s) 222, 516, 693
MmeI TCCRAC 2 cut(s) 60, 90
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 4 cut(s) 477, 567, 606, 660
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 738
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 539
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 539
NdeII GATC 1 cut(s) 277
NlaIII CATG 7 cut(s) 184, 327, 452, 466, 470, 765, 890
NlaIV GGNNCC 1 cut(s) 789
NmuCI GTSAC 2 cut(s) 350, 452
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 890
PagI TCATGA 1 cut(s) 180
PceI AGGCCT 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 291
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 2 cut(s) 98, 921
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 789
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 738
RsaI GTAC 4 cut(s) 332, 556, 667, 885
RsaNI GTAC 4 cut(s) 331, 555, 666, 884
RseI CAYNNNNRTG 1 cut(s) 447
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 4 cut(s) 477, 567, 606, 660
SatI GCNGC 2 cut(s) 97, 920
Sau3AI GATC 1 cut(s) 277
ScaI AGTACT 1 cut(s) 667
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 2 cut(s) 388, 409
SfaNI GCATC 5 cut(s) 310, 642, 692, 765, 835
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 3 cut(s) 222, 516, 693
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 1 cut(s) 426
SspMI CTAG 1 cut(s) 17
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 3 cut(s) 361, 665, 987
TaiI ACGT 1 cut(s) 125
TasI AATT 3 cut(s) 222, 516, 693
TatI WGTACW 2 cut(s) 330, 665
Tru1I TTAA 4 cut(s) 477, 567, 606, 660
Tru9I TTAA 4 cut(s) 477, 567, 606, 660
TseFI GTSAC 2 cut(s) 350, 452
TseI GCWGC 2 cut(s) 96, 919
Tsp45I GTSAC 2 cut(s) 350, 452
TspDTI ATGAA 7 cut(s) 129, 189, 389, 437, 612, 795, 851
TspGWI ACGGA 1 cut(s) 308
VneI GTGCAC 1 cut(s) 405
XagI CCTNNNNNAGG 1 cut(s) 536
XceI RCATGY 1 cut(s) 890
XmiI GTMKAC 2 cut(s) 11, 982
XspI CTAG 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 667
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.