Rroxscaffold_1G00002680

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
3189859 .. 3193250
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002680.1

Sequence Viewer

Length: 243 bp
ATGGGTTTTGCTTGTATCAGATTCCTTCATAGTGTGAATCTGGTACTATGCATGGATACCCATTCCCAAACTGAAGCTAATTTCTCGATTTCATGTGTCGTCGTTGTCATCGCCACCTTCATCCGGTCTTCTGCTCCCACAAACTTAAGAGACGATGAAGAAGAACCCAGTACACAAAAGGCCTTTACCTTTTCGCTCCCATTTTTTGTTTTTTGGGTTAAGTATTGGTGGATGGGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.26

Weight (kDa)

6.02

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025068)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0265711
rosa_roxburghii Rroxscaffold_1G00002680
rosa_rugosa Rorug02G0152700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 45, 172
AfiI CCNNNNNNNGG 1 cut(s) 123
AflII CTTAAG 1 cut(s) 145
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 1 cut(s) 226
BciVI GTATCC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 145
BfuI GTATCC 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 120, 237
BseLI CCNNNNNNNGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 168
BshFI GGCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 182
BspANI GGCC 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 120, 237
BstMAI GTCTC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 120
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 120, 237
Csp6I GTAC 2 cut(s) 44, 171
CviAII CATG 2 cut(s) 52, 93
CviJI RGCY 2 cut(s) 77, 182
CviKI_1 RGCY 2 cut(s) 77, 182
CviQI GTAC 2 cut(s) 44, 171
Eco147I AGGCCT 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 55, 96
FaiI YATR 4 cut(s) 30, 49, 53, 94
FatI CATG 2 cut(s) 51, 92
FokI GGATG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 124
Hin1II CATG 2 cut(s) 55, 96
HinfI GANTC 2 cut(s) 21, 37
HpaII CCGG 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 35, 127, 231
HpyCH4V TGCA 1 cut(s) 51
Hsp92II CATG 2 cut(s) 55, 96
LmnI GCTCC 2 cut(s) 139, 201
LpnPI CCDG 3 cut(s) 26, 137, 181
MboII GAAGA 3 cut(s) 120, 170, 173
MluCI AATT 1 cut(s) 79
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 2 cut(s) 146, 219
MspCI CTTAAG 1 cut(s) 145
MspI CCGG 1 cut(s) 124
NlaIII CATG 2 cut(s) 55, 96
NsiI ATGCAT 1 cut(s) 53
PceI AGGCCT 1 cut(s) 182
PfeI GAWTC 2 cut(s) 21, 37
RsaI GTAC 2 cut(s) 45, 172
RsaNI GTAC 2 cut(s) 44, 171
SaqAI TTAA 2 cut(s) 146, 219
SetI ASST 4 cut(s) 79, 119, 191, 242
SgeI CNNG 7 cut(s) 24, 53, 64, 97, 105, 136, 180
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 1 cut(s) 182
StuI AGGCCT 1 cut(s) 182
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 2 cut(s) 21, 37
Tru1I TTAA 2 cut(s) 146, 219
Tru9I TTAA 2 cut(s) 146, 219
TspDTI ATGAA 4 cut(s) 17, 81, 109, 171
Vha464I CTTAAG 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.