RchiOBHm_Chr6g0267421

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0024359
Physical Location & Seq
Reverse (-)
24129009 .. 24130845
1837 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGGCTGGCCTTCAGGTCACACTGGGGATATCTACACTTCTGTCATATGTGCCTGTTGGGCTTGGCACTGCACATCAAGCTGGGGCATTGACTCTCTTCACACTTATGATCCTTCTCAATCACATTGTGAGGAAGCCATCACCATCCCTTCTTAAATCTCTACCTCAAGTAGCAAAGACAATATAA

Protein Analysis

61

Amino Acids

6.39

Weight (kDa)

10.46

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX15-CtaA PF02628 2 - 37 1.4e-07 Cytochrome oxidase assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024359)

Species Orthologous Gene IDs
malus_domestica MD02G1271500.v1.1
rosa_chinensis RchiOBHm_Chr6g0267421
rosa_samantha Rh6CG149500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 103
AdeI CACNNNGTG 1 cut(s) 127
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AlwI GGATC 1 cut(s) 103
AoxI GGCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 132
BccI CCATC 2 cut(s) 145, 151
BglI GCCNNNNNGGC 1 cut(s) 58
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 9
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 108
BspANI GGCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 27
BssMI GATC 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 58, 77
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 20, 66
Cac8I GCNNGC 1 cut(s) 7
CviJI RGCY 5 cut(s) 5, 9, 61, 80, 136
CviKI_1 RGCY 5 cut(s) 5, 9, 61, 80, 136
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DraIII CACNNNGTG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 30
EcoRV GATATC 1 cut(s) 30
FaiI YATR 4 cut(s) 46, 48, 107, 184
FauNDI CATATG 1 cut(s) 46
FokI GGATG 1 cut(s) 130
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 9
HinfI GANTC 1 cut(s) 91
HphI GGTGA 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 20, 122, 158
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 77
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 3 cut(s) 8, 66, 66
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 88
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 2 cut(s) 123, 174
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 58, 77
NdeI CATATG 1 cut(s) 46
NdeII GATC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 16
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 1 cut(s) 108
SchI GAGTC 1 cut(s) 85
SetI ASST 3 cut(s) 18, 82, 166
SgeI CNNG 8 cut(s) 18, 26, 35, 65, 74, 89, 93, 179
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 27, 73
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 2 cut(s) 27, 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.