RchiOBHm_Chr6g0274391

BRIGHT, ARID (A/T-rich interaction domain) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019957
Physical Location & Seq
Forward (+)
35879253 .. 35882113
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGCAGGGTTGGCACTCTCAATGCCTTTTTGGAAATGGCGAGGAGAAGCATTTGAGTACTATGCCAAAAAGTGACAAGCAGCTCAAGAGCTCTGGTTTGTTAAAGCGGAAAAAGCTATCTCCTGGGGATTGTGCTGCCCAGATTACTGACATGAAAGTGACAAAGCCACGGTTAGATATGACGGTATTCGATATTGGACCGCCAGCAGATTGGGTGAAAATTAACGTGAAACGATTTAGCGACTGCTTTGAGGTATGTGCCCTAGTTCCTGGACTTCTGCGTGAGGAGATCGAATTACGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID HSP20

Protein Analysis

101

Amino Acids

11.39

Weight (kDa)

8.75

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019957)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0274391
rosa_rugosa Rorug05G0089900
rosa_samantha Rh1BG080200 Rh3BG312000 Rh5AG515800 Rh6DG192500 Rh7DG366400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 106, 200
AfaI GTAC 1 cut(s) 58
AjnI CCWGG 2 cut(s) 121, 268
AluBI AGCT 3 cut(s) 82, 90, 115
AluI AGCT 3 cut(s) 82, 90, 115
Alw21I GWGCWC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 79, 134
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 91, 121
BciT130I CCWGG 2 cut(s) 123, 270
BfaI CTAG 1 cut(s) 263
BisI GCNGC 2 cut(s) 80, 135
BlsI GCNGC 2 cut(s) 81, 136
BmcAI AGTACT 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 123, 270
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 2 cut(s) 123, 270
BpuEI CTTGAG 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 122, 167
BseBI CCWGG 2 cut(s) 123, 270
BseDI CCNNGG 2 cut(s) 122, 167
BseRI GAGGAG 2 cut(s) 56, 299
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 2 cut(s) 91, 121
BsiHKAI GWGCWC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 92, 262
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 2 cut(s) 106, 200
BssECI CCNNGG 2 cut(s) 122, 167
BssMI GATC 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 123, 270
Bst4CI ACNGT 2 cut(s) 171, 184
BstC8I GCNNGC 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 167
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 10, 112
BstNI CCWGG 2 cut(s) 123, 270
BstSCI CCNGG 2 cut(s) 121, 268
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 91, 121
BstXI CCANNNNNNTGG 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 57
CviAII CATG 1 cut(s) 151
CviJI RGCY 4 cut(s) 82, 90, 115, 166
CviKI_1 RGCY 4 cut(s) 82, 90, 115, 166
CviQI GTAC 1 cut(s) 57
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 121, 268
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 1 cut(s) 154
FaiI YATR 6 cut(s) 62, 152, 179, 256, 302, 304
FatI CATG 1 cut(s) 150
FauNDI CATATG 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 80, 135
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 80, 135
FspBI CTAG 1 cut(s) 263
GluI GCNGC 2 cut(s) 80, 135
Hin1II CATG 1 cut(s) 154
HphI GGTGA 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 171, 184
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 112
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 154
Kzo9I GATC 1 cut(s) 288
LpnPI CCDG 7 cut(s) 78, 108, 135, 152, 216, 255, 282
Lsp1109I GCAGC 2 cut(s) 91, 121
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 71, 157
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MhlI GDGCHC 2 cut(s) 92, 262
MluCI AATT 2 cut(s) 219, 293
MnlI CCTC 3 cut(s) 34, 244, 277
MseI TTAA 2 cut(s) 101, 222
MslI CAYNNNNRTG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 123, 270
MvaI CCWGG 2 cut(s) 123, 270
MwoI GCNNNNNNNGC 2 cut(s) 10, 112
NdeI CATATG 1 cut(s) 302
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 154
NmuCI GTSAC 2 cut(s) 71, 157
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 2 cut(s) 81, 136
Psp124BI GAGCTC 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 121, 268
PspGI CCWGG 2 cut(s) 121, 268
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 101, 222
SatI GCNGC 2 cut(s) 80, 135
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 197
ScaI AGTACT 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 123, 270
SduI GDGCHC 2 cut(s) 92, 262
SetI ASST 5 cut(s) 84, 92, 117, 228, 255
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 219, 293
SsiI CCGC 2 cut(s) 106, 200
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 121, 268
TaaI ACNGT 2 cut(s) 171, 184
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 189, 291
TasI AATT 2 cut(s) 219, 293
TatI WGTACW 1 cut(s) 56
Tru1I TTAA 2 cut(s) 101, 222
Tru9I TTAA 2 cut(s) 101, 222
TseFI GTSAC 2 cut(s) 71, 157
TseI GCWGC 2 cut(s) 79, 134
Tsp45I GTSAC 2 cut(s) 71, 157
TspDTI ATGAA 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 197
XspI CTAG 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.