Rorug05G0089900
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
7793650 .. 7885350
91701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0089900.1

Sequence Viewer

Length: 3078 bp
ATGAAGATGGCAATTAGAGTTGGAGTTAGTGTTTGGAAAACCATCATGAACCTCAACTTGGTGGTGATACTAGTTCACTGCAGTTTTGGATCAGTCAAAGTTGAAGCTCTTTTGACTCATCTTCCTGATACTGAAGTGCAAGCCCTACGAGAAATTGCTACACAAATGGGAAAAAAAGACTGGAACTTCAGCGCAGACCCGTGCCTCAATGACACAACCCACACAAGCTGGACTACCCCAAAATCTGTTGACAGACCTCTATTCAACAACACTCTCACTTGCAACTGCTCCTTCCCTGATGGCTCATGCCATGTCATCTACATTTTTCTTAAGGGGCAAGATCTTGCTGGTGTTCTTCCACGATCTATTGCAAAGTTACCCTACCTTACACAAATCGATTTCACGAGGAACTTTCTTAGTGGTAATATACCGAGTGAATGGGGTTCTACAAAGTTGGAATATATGTCCTTTAATGTGAACAACTTATCTGGACCAATCCCTGCCTTCTTGGGAAACATCACCACTCTAAAATACTTGAACCTAGAGACTAACATGTTTACTGGAACTGTTCCTCCTGAACTTGGGAATTTGGTTAACTTGCAAAATCTCATTATTAGTGCAAACAATCTCACAGGAGTGTTACCAGTGAATCTCACTAATCTGAACAAACTAACAGAATTGAGGATAAGCAGTAACAACTTCACTGGAAGAATTCCAGACTTTTTCCGAAGTTGGAGTCAACTTATAAAATTAGAGATCCAAGCTAGTGGTCTAGAAGGCCCCATTCCGTCTAGCATTTCTGTCTTGAGTAATCTAACAGAACTAAGGATCAGCGACTTAAACGGAGGGGGTTCAGTATTTCCGAACTTGACTAATATGAAAAGCATGAAAAGATTAATGCTGAGGAGCTGTAATTTATCAGGACCTATTCCTGATTTAAAAGCAATGGCAGGAGTGAATAAATTAGATCTCAGCTTCAACAAATTGGAAGGAAGTTTTCCTGATCTTGAAGCTATGGCTCTGGATCCGGACAATTTGCAGTACTTGTATCTGACAAGCAACTTACTCAATGGCTCTATTCCAAATTGGGTTAAGAGCAAAGATAACCGCTACCAGATAGACGTTTCTTACAATAATTTTTCCAAGGACTCTGAGCCATCTACATGTAGCGAATACCTGAACGTTTTCAAAAGCTTTTCTGCACCAAACATCAACTCATTATCTGGAGCGTGCCTGCAGAAATATCCATGTACAAAAGTTCAGTACTCATTGCATATAAATTGTGGTGGAGGAGCGACCACCATTGGAGGAGTCAAATTTGAAGATGATACGGATCTTGGAGGTGGAGCAAAATTTGTTCCAGTGAGAGCTAACTGGGGAACCAGTAGCACTGGAGTTTTCTGGGATACTAATGTCACCTCTAAAGACTACATAGCAAATAATGTATCGACACTTGGAATGGAAAACTCTCAGTTGTACACAAATGCACGCCTCACTCCTCTTTCTCTCACATATTATGCAAACTGCTTAGGAGATGGAAATTATACTGTCAAACTTCACTTTGCGGAGATAATAATCCGAGGCAACAGATCCTTTCAGAGTGTTGGAAGACGGATTTTTGATGTCTATATTCAGGAGAAACTTGTATGGAAGGATTTTGACATCGTAAAGGAAGCACCAGGGGTTGACAAGGTATACATTATAGAAACAAATGCAGTTCAAGTTACAAACAAAACTCTAGAGATTCGGTTTCATTGGTCTGGAAAAGGCACAACAGCATCCCCTAGACGAGGAATCTATGGTCCCCTTATATCAGCCATTTCTATAGAGCCTGAGTTCAAGCATTCCAAAACAAATATGGCTATTGTGGTTGGAGTTTCAGTTGGAGCTTCGGTTTTGTGCCTGTTCTTCTTAATTTTTGGCATTCTTTGGTGGAAAGGCTGTCCGGTGGATAGTCAGAAATCAAGAGAAGAAGTTCTGAGAGGACTGGATCTGCGGACTGGCTTTTTCACCTTGAGGCAAATTAAAGCTGCTACTAATAACTTTGATCCTTTAAACAAAATTGGAGAAGGTGGTTTTGGTCCCGTATACAAGGGTACACTTTTGGATGGTACTATAATTGCAGTTAAGCAACTATCTTCAAAATCAAAGCAGGGAAATCGTGAATTTGTGAACGAAATAGGCATGATCTCTTGTTTGCAGCATCCAAATCTGGTTAAAATGTATGGATGTTGTATTGAAGCAAACCAGTTATTGTTGGTGTATGAGTACCTGGAGAACAATAGCCTTGCTCGCGCCTTGTACGGTCCAGAGGATGATCGTTTAAACTTGGACTGGCCTACAAGGCAGAAAATATGCCTAGGCATAGCAAAAGGTCTGGCTTATTTGCACGAGGAATCGGCAGTGAAGGTTGTACATAGAGACATCAAAACTACGAATGTGTTACTGGACCAAGACCTCAATGCTAAGATCTCGGACTTTGGTTTGGCCAAGCTTGACGAAGAGGAGCAAACTCATATTAGCACCAAGGTTGCTGGAACTATAGGATATATGGCACCGGAATATGCTCTATGGGGTTGTTTGACCTTTAAAGCAGATGTCTACAGTTTTGGAATTGTTGCATTAGAAATTGTAGCAGGAAAGAACAACATGAAATGTCGACCCAATGAGAACATTCAGTGTCTTATGGATTGGGCCCTTGTTTTGCAACAAAAAGGGAACTTACTGGAGCTGGTGGATCCGAGGTTGGGGTCCGATTTCAGTACGAAAGAGGCGATTAGAATGATCAAAGTAGGTCTACTGTGCGCCAATCCAACAGCTGGACTTAGGCCTATCATGTCTGAAGTAGTGAGTATGCTTGAAGGGCGGACCGCCGTGGATGAAGTGGTTCTGGATCCAAGTATCCACGGTGATGAAATGACGAGGTTAAAAGCCTTCGAAGAGCAGTTTGATCACAGCACTGCACAATGGAGCTCCCCAAGTGGAAGTCATGGCCTCATTCGTTCATCAGATGCACCATGGACCGGTTCTACTATTACTACTGAGTCTTCAGATCTCTATAAAGTTTATTCAAGTTAA

Protein Analysis

1025

Amino Acids

113.25

Weight (kDa)

6.47

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 169 - 366 1.4e-12 Leucine-rich repeat region
Malectin PF11721 423 - 607 9.2e-37 Malectin domain
Pkinase PF00069 685 - 891 2.8e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 686 - 891 1.7e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AccB1I GGYRCC 1 cut(s) 2554
AccB7I CCANNNNNTGG 1 cut(s) 2819
AccI GTMKAC 5 cut(s) 1695, 2088, 2601, 2659, 2797
AccII CGCG 1 cut(s) 2295
AccIII TCCGGA 1 cut(s) 1027
AciI CCGC 5 cut(s) 1108, 1565, 1996, 2866, 2871
AclI AACGTT 1 cut(s) 1182
AcoI YGGCCR 1 cut(s) 2487
AcsI RAATTY 5 cut(s) 586, 711, 1316, 1352, 2165
AcuI CTGAAG 4 cut(s) 153, 172, 2862, 3033
AfiI CCNNNNNNNGG 6 cut(s) 58, 581, 1790, 2747, 2819, 3023
AflII CTTAAG 1 cut(s) 329
AflIII ACRYGT 2 cut(s) 552, 1163
AgeI ACCGGT 1 cut(s) 3023
AhlI ACTAGT 1 cut(s) 70
AjnI CCWGG 2 cut(s) 1678, 2271
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 2061, 2093
AleI CACNNNNGTG 1 cut(s) 635
AloI GAACNNNNNNTCC 2 cut(s) 556, 588
Alw21I GWGCWC 1 cut(s) 2975
Alw26I GTCTC 2 cut(s) 539, 2415
Aor13HI TCCGGA 1 cut(s) 1027
AoxI GGCC 6 cut(s) 778, 2336, 2487, 2694, 2828, 2992
ApaI GGGCCC 1 cut(s) 2698
ApeKI GCWGC 2 cut(s) 2030, 2200
ApoI RAATTY 5 cut(s) 586, 711, 1316, 1352, 2165
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AseI ATTAAT 1 cut(s) 896
AsiGI ACCGGT 1 cut(s) 3023
Asp700I GAANNNNTTC 3 cut(s) 1184, 1974, 2886
AspA2I CCTAGG 1 cut(s) 2359
AspLEI GCGC 3 cut(s) 194, 2297, 2807
AsuHPI GGTGA 5 cut(s) 76, 511, 1408, 2002, 2921
AsuII TTCGAA 1 cut(s) 2937
AvaII GGWCC 9 cut(s) 491, 923, 1802, 2081, 2306, 2449, 2751, 2868, 3021
AvrII CCTAGG 1 cut(s) 2359
BaeGI GKGCMC 1 cut(s) 2698
BaeI ACNNNNGTAYC 4 cut(s) 120, 153, 1398, 1431
BalI TGGCCA 1 cut(s) 2489
BamHI GGATCC 3 cut(s) 1024, 2737, 2893
BanI GGYRCC 1 cut(s) 2554
BanII GRGCYC 2 cut(s) 2698, 2975
BauI CACGAG 2 cut(s) 403, 2390
BbsI GAAGAC 2 cut(s) 1615, 3039
Bbv12I GWGCWC 1 cut(s) 2975
BbvCI CCTCAGC 1 cut(s) 902
BbvI GCAGC 2 cut(s) 2017, 2212
BccI CCATC 5 cut(s) 50, 293, 1165, 1529, 2102
BceAI ACGGC 1 cut(s) 2858
BcgI CGANNNNNNTGC 2 cut(s) 2141, 2175
BciT130I CCWGG 2 cut(s) 1680, 2273
BciVI GTATCC 2 cut(s) 1399, 2912
BclI TGATCA 2 cut(s) 2784, 2950
BcoDI GTCTC 2 cut(s) 539, 2415
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 8 cut(s) 71, 542, 765, 773, 792, 1739, 1785, 2360
BfmI CTRYAG 5 cut(s) 79, 1235, 1824, 2541, 2602
BfrI CTTAAG 1 cut(s) 329
BfuI GTATCC 2 cut(s) 1399, 2912
BglI GCCNNNNNGGC 1 cut(s) 2344
BglII AGATCT 4 cut(s) 340, 967, 2469, 3052
BisI GCNGC 2 cut(s) 2031, 2201
BlnI CCTAGG 1 cut(s) 2359
BlsI GCNGC 2 cut(s) 2032, 2202
BmcAI AGTACT 2 cut(s) 1043, 1265
Bme1390I CCNGG 2 cut(s) 1680, 2273
Bme18I GGWCC 9 cut(s) 491, 923, 1802, 2081, 2306, 2449, 2751, 2868, 3021
BmrFI CCNGG 2 cut(s) 1680, 2273
BmrI ACTGGG 1 cut(s) 1384
BmsI GCATC 3 cut(s) 1787, 2212, 3001
BmuI ACTGGG 1 cut(s) 1384
BpiI GAAGAC 2 cut(s) 1615, 3039
BpmI CTGGAG 4 cut(s) 1245, 1413, 2294, 2747
Bpu10I CCTNAGC 2 cut(s) 902, 1528
Bpu14I TTCGAA 1 cut(s) 2937
BpuEI CTTGAG 2 cut(s) 826, 2035
Bsa29I ATCGAT 1 cut(s) 396
BsaBI GATNNNNATC 2 cut(s) 1332, 1574
BsaJI CCNNGG 9 cut(s) 1143, 1579, 1679, 2359, 2526, 2741, 2874, 2905, 3017
BsaWI WCCGGW 4 cut(s) 1027, 1945, 2557, 3023
BsaXI ACNNNNNCTCC 8 cut(s) 15, 45, 556, 586, 1866, 1878, 1896, 1908
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 581, 1790, 2747, 2819, 3023
Bse118I RCCGGY 1 cut(s) 3023
Bse3DI GCAATG 2 cut(s) 951, 1268
Bse8I GATNNNNATC 2 cut(s) 1332, 1574
BseAI TCCGGA 1 cut(s) 1027
BseBI CCWGG 2 cut(s) 1680, 2273
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 9 cut(s) 1143, 1579, 1679, 2359, 2526, 2741, 2874, 2905, 3017
BseGI GGATG 6 cut(s) 1778, 2113, 2203, 2234, 2320, 2884
BseJI GATNNNNATC 2 cut(s) 1332, 1574
BseLI CCNNNNNNNGG 6 cut(s) 58, 581, 1790, 2747, 2819, 3023
BseMI GCAATG 2 cut(s) 951, 1268
BseMII CTCAG 7 cut(s) 893, 985, 1143, 1484, 1824, 1970, 3033
BseRI GAGGAG 5 cut(s) 919, 1305, 1323, 1488, 2519
BseSI GKGCMC 1 cut(s) 2698
BseXI GCAGC 2 cut(s) 2017, 2212
BsgI GTGCAG 2 cut(s) 1185, 2946
Bsh1236I CGCG 1 cut(s) 2295
BshFI GGCC 6 cut(s) 780, 2338, 2489, 2696, 2830, 2994
BshNI GGYRCC 1 cut(s) 2554
BshTI ACCGGT 1 cut(s) 3023
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 2975
BsiSI CCGG 4 cut(s) 1028, 1946, 2558, 3024
BslFI GGGAC 2 cut(s) 1788, 2067
BslI CCNNNNNNNGG 6 cut(s) 58, 581, 1790, 2747, 2819, 3023
BsmAI GTCTC 2 cut(s) 539, 2415
BsmFI GGGAC 2 cut(s) 1788, 2067
BsmI GAATGC 2 cut(s) 1843, 1923
BsnI GGCC 6 cut(s) 780, 2338, 2489, 2696, 2830, 2994
Bsp119I TTCGAA 1 cut(s) 2937
Bsp120I GGGCCC 1 cut(s) 2694
Bsp1286I GDGCHC 2 cut(s) 2698, 2975
Bsp13I TCCGGA 1 cut(s) 1027
Bsp1407I TGTACA 3 cut(s) 1250, 1476, 2413
Bsp19I CCATGG 1 cut(s) 3017
BspACI CCGC 5 cut(s) 1108, 1565, 1996, 2866, 2871
BspANI GGCC 6 cut(s) 780, 2338, 2489, 2696, 2830, 2994
BspCNI CTCAG 7 cut(s) 894, 984, 1144, 1483, 1825, 1971, 3034
BspDI ATCGAT 1 cut(s) 396
BspEI TCCGGA 1 cut(s) 1027
BspFNI CGCG 1 cut(s) 2295
BspHI TCATGA 1 cut(s) 45
BspMAI CTGCAG 2 cut(s) 83, 1239
BspQI GCTCTTC 1 cut(s) 2934
BspT104I TTCGAA 1 cut(s) 2937
BspT107I GGYRCC 1 cut(s) 2554
BspTI CTTAAG 1 cut(s) 329
BsrDI GCAATG 2 cut(s) 951, 1268
BsrFI RCCGGY 1 cut(s) 3023
BsrGI TGTACA 3 cut(s) 1250, 1476, 2413
BssAI RCCGGY 1 cut(s) 3023
BssECI CCNNGG 9 cut(s) 1143, 1579, 1679, 2359, 2526, 2741, 2874, 2905, 3017
BssNAI GTATAC 2 cut(s) 1696, 2089
BssSI CACGAG 2 cut(s) 403, 2390
BssT1I CCWWGG 4 cut(s) 1143, 2359, 2526, 3017
Bst1107I GTATAC 2 cut(s) 1696, 2089
Bst2BI CACGAG 2 cut(s) 403, 2390
Bst2UI CCWGG 2 cut(s) 1680, 2273
Bst4CI ACNGT 6 cut(s) 568, 1549, 2306, 2606, 2802, 2909
Bst6I CTCTTC 2 cut(s) 2496, 2934
BstAFI CTTAAG 1 cut(s) 329
BstAUI TGTACA 3 cut(s) 1250, 1476, 2413
BstBI TTCGAA 1 cut(s) 2937
BstC8I GCNNGC 5 cut(s) 141, 1231, 1235, 1489, 2293
BstDSI CCRYGG 3 cut(s) 2874, 2905, 3017
BstENI CCTNNNNNAGG 1 cut(s) 1788
BstF5I GGATG 6 cut(s) 1778, 2113, 2203, 2234, 2320, 2884
BstFNI CGCG 1 cut(s) 2295
BstHHI GCGC 3 cut(s) 194, 2297, 2807
BstMAI GTCTC 2 cut(s) 539, 2415
BstMWI GCNNNNNNNGC 3 cut(s) 2292, 2344, 2863
BstNI CCWGG 2 cut(s) 1680, 2273
BstNSI RCATGY 2 cut(s) 556, 1167
BstSCI CCNGG 2 cut(s) 1678, 2271
BstSFI CTRYAG 5 cut(s) 79, 1235, 1824, 2541, 2602
BstSLI GKGCMC 1 cut(s) 2698
BstUI CGCG 1 cut(s) 2295
BstV1I GCAGC 2 cut(s) 2017, 2212
BstV2I GAAGAC 2 cut(s) 1615, 3039
BstXI CCANNNNNNTGG 1 cut(s) 767
BstZ17I GTATAC 2 cut(s) 1696, 2089
Bsu15I ATCGAT 1 cut(s) 396
BsuI GTATCC 2 cut(s) 1399, 2912
BsuRI GGCC 6 cut(s) 780, 2338, 2489, 2696, 2830, 2994
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 3 cut(s) 2874, 2905, 3017
BtsCI GGATG 6 cut(s) 1778, 2113, 2203, 2234, 2320, 2884
BtsI GCAGTG 3 cut(s) 76, 2409, 2958
BtsIMutI CAGTG 8 cut(s) 76, 651, 702, 1368, 1389, 2409, 2684, 2958
Cac8I GCNNGC 5 cut(s) 141, 1231, 1235, 1489, 2293
CciI TCATGA 1 cut(s) 45
CfoI GCGC 3 cut(s) 194, 2297, 2807
Cfr10I RCCGGY 1 cut(s) 3023
ClaI ATCGAT 1 cut(s) 396
CpoI CGGWCCG 1 cut(s) 2868
CspAI ACCGGT 1 cut(s) 3023
CspI CGGWCCG 1 cut(s) 2868
DraI TTTAAA 4 cut(s) 939, 2055, 2325, 2590
EaeI YGGCCR 1 cut(s) 2487
Eam1104I CTCTTC 2 cut(s) 2496, 2934
EarI CTCTTC 2 cut(s) 2496, 2934
EciI GGCGGA 1 cut(s) 2881
Ecl136II GAGCTC 1 cut(s) 2973
Eco130I CCWWGG 4 cut(s) 1143, 2359, 2526, 3017
Eco147I AGGCCT 1 cut(s) 2830
Eco24I GRGCYC 2 cut(s) 2698, 2975
Eco47I GGWCC 9 cut(s) 491, 923, 1802, 2081, 2306, 2449, 2751, 2868, 3021
Eco53kI GAGCTC 1 cut(s) 2973
Eco57I CTGAAG 4 cut(s) 153, 172, 2862, 3033
EcoICRI GAGCTC 1 cut(s) 2973
EcoNI CCTNNNNNAGG 1 cut(s) 1788
EcoO109I RGGNCCY 3 cut(s) 779, 923, 2695
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 1678, 2271
EcoT14I CCWWGG 4 cut(s) 1143, 2359, 2526, 3017
EcoT38I GRGCYC 2 cut(s) 2698, 2975
ErhI CCWWGG 4 cut(s) 1143, 2359, 2526, 3017
FaqI GGGAC 2 cut(s) 1788, 2067
FbaI TGATCA 2 cut(s) 2784, 2950
FblI GTMKAC 5 cut(s) 1695, 2088, 2601, 2659, 2797
Fnu4HI GCNGC 2 cut(s) 2031, 2201
FokI GGATG 6 cut(s) 1765, 2120, 2190, 2241, 2327, 2891
FriOI GRGCYC 2 cut(s) 2698, 2975
Fsp4HI GCNGC 2 cut(s) 2031, 2201
FspBI CTAG 8 cut(s) 71, 542, 765, 773, 792, 1739, 1785, 2360
GlaI GCGC 3 cut(s) 193, 2296, 2806
GluI GCNGC 2 cut(s) 2031, 2201
GsuI CTGGAG 4 cut(s) 1245, 1413, 2294, 2747
HaeIII GGCC 6 cut(s) 780, 2338, 2489, 2696, 2830, 2994
HapII CCGG 4 cut(s) 1028, 1946, 2558, 3024
HhaI GCGC 3 cut(s) 194, 2297, 2807
Hin6I GCGC 3 cut(s) 192, 2295, 2805
HinP1I GCGC 3 cut(s) 192, 2295, 2805
HincII GTYRAC 5 cut(s) 250, 595, 740, 1687, 2660
HindII GTYRAC 5 cut(s) 250, 595, 740, 1687, 2660
HindIII AAGCTT 2 cut(s) 1192, 2492
HinfI GANTC 9 cut(s) 115, 649, 736, 1148, 1311, 1744, 1794, 2396, 3044
HpaI GTTAAC 1 cut(s) 595
HpaII CCGG 4 cut(s) 1028, 1946, 2558, 3024
HphI GGTGA 5 cut(s) 76, 511, 1408, 2002, 2921
HpyAV CCTTC 9 cut(s) 301, 514, 770, 983, 1645, 2063, 2401, 2855, 2944
HpyCH4III ACNGT 6 cut(s) 568, 1549, 2306, 2606, 2802, 2909
HpyCH4IV ACGT 2 cut(s) 1122, 1182
HpyF10VI GCNNNNNNNGC 3 cut(s) 2292, 2344, 2863
HpySE526I ACGT 2 cut(s) 1122, 1182
HspAI GCGC 3 cut(s) 192, 2295, 2805
Kpn2I TCCGGA 1 cut(s) 1027
Ksp22I TGATCA 2 cut(s) 2784, 2950
KspAI GTTAAC 1 cut(s) 595
LguI GCTCTTC 1 cut(s) 2934
Lsp1109I GCAGC 2 cut(s) 2017, 2212
LweI GCATC 3 cut(s) 1787, 2212, 3001
MaeI CTAG 8 cut(s) 71, 542, 765, 773, 792, 1739, 1785, 2360
MaeII ACGT 2 cut(s) 1122, 1182
MaeIII GTNAC 6 cut(s) 375, 639, 692, 1414, 1723, 2442
MhlI GDGCHC 2 cut(s) 2698, 2975
MlsI TGGCCA 1 cut(s) 2489
MluNI TGGCCA 1 cut(s) 2489
MlyI GAGTC 5 cut(s) 109, 745, 1142, 1320, 3053
MmeI TCCRAC 6 cut(s) 435, 713, 1585, 1852, 1864, 2837
Mox20I TGGCCA 1 cut(s) 2489
MroI TCCGGA 1 cut(s) 1027
MroXI GAANNNNTTC 3 cut(s) 1184, 1974, 2886
MscI TGGCCA 1 cut(s) 2489
MslI CAYNNNNRTG 3 cut(s) 635, 1162, 2910
Msp20I TGGCCA 1 cut(s) 2489
MspA1I CMGCKG 1 cut(s) 2819
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 4 cut(s) 1028, 1946, 2558, 3024
MspR9I CCNGG 2 cut(s) 1680, 2273
MssI GTTTAAAC 1 cut(s) 2325
Mva1269I GAATGC 2 cut(s) 1843, 1923
MvaI CCWGG 2 cut(s) 1680, 2273
MvnI CGCG 1 cut(s) 2295
MwoI GCNNNNNNNGC 3 cut(s) 2292, 2344, 2863
NcoI CCATGG 1 cut(s) 3017
NmuCI GTSAC 1 cut(s) 1414
NspI RCATGY 2 cut(s) 556, 1167
NspV TTCGAA 1 cut(s) 2937
OliI CACNNNNGTG 1 cut(s) 635
PagI TCATGA 1 cut(s) 45
PceI AGGCCT 1 cut(s) 2830
PciI ACATGT 2 cut(s) 552, 1163
PciSI GCTCTTC 1 cut(s) 2934
PcsI WCGNNNNNNNCGW 1 cut(s) 2771
PctI GAATGC 2 cut(s) 1843, 1923
PdmI GAANNNNTTC 3 cut(s) 1184, 1974, 2886
PfeI GAWTC 4 cut(s) 649, 1744, 1794, 2396
PflMI CCANNNNNTGG 1 cut(s) 2819
PinAI ACCGGT 1 cut(s) 3023
PkrI GCNGC 2 cut(s) 2032, 2202
PleI GAGTC 5 cut(s) 109, 744, 1142, 1319, 3052
PmeI GTTTAAAC 1 cut(s) 2325
PpsI GAGTC 5 cut(s) 109, 744, 1142, 1319, 3052
PpuMI RGGWCCY 1 cut(s) 923
PscI ACATGT 2 cut(s) 552, 1163
PshBI ATTAAT 1 cut(s) 896
PsiI TTATAA 1 cut(s) 746
Psp124BI GAGCTC 1 cut(s) 2975
Psp1406I AACGTT 1 cut(s) 1182
Psp5II RGGWCCY 1 cut(s) 923
Psp6I CCWGG 2 cut(s) 1678, 2271
PspGI CCWGG 2 cut(s) 1678, 2271
PspOMI GGGCCC 1 cut(s) 2694
PspPPI RGGWCCY 1 cut(s) 923
PstI CTGCAG 2 cut(s) 83, 1239
PvuII CAGCTG 1 cut(s) 2819
RseI CAYNNNNRTG 3 cut(s) 635, 1162, 2910
Rsr2I CGGWCCG 1 cut(s) 2868
RsrII CGGWCCG 1 cut(s) 2868
SacI GAGCTC 1 cut(s) 2975
SalI GTCGAC 1 cut(s) 2658
SapI GCTCTTC 1 cut(s) 2934
SatI GCNGC 2 cut(s) 2031, 2201
ScaI AGTACT 2 cut(s) 1043, 1265
SchI GAGTC 5 cut(s) 109, 745, 1142, 1320, 3053
ScrFI CCNGG 2 cut(s) 1680, 2273
SduI GDGCHC 2 cut(s) 2698, 2975
SfaNI GCATC 3 cut(s) 1787, 2212, 3001
SfcI CTRYAG 5 cut(s) 79, 1235, 1824, 2541, 2602
SfuI TTCGAA 1 cut(s) 2937
SinI GGWCC 9 cut(s) 491, 923, 1802, 2081, 2306, 2449, 2751, 2868, 3021
SmiMI CAYNNNNRTG 3 cut(s) 635, 1162, 2910
SmlI CTYRAG 3 cut(s) 329, 805, 2014
SmoI CTYRAG 3 cut(s) 329, 805, 2014
SpeI ACTAGT 1 cut(s) 70
SseBI AGGCCT 1 cut(s) 2830
SsiI CCGC 5 cut(s) 1108, 1565, 1996, 2866, 2871
SspMI CTAG 8 cut(s) 71, 542, 765, 773, 792, 1739, 1785, 2360
SstI GAGCTC 1 cut(s) 2975
StuI AGGCCT 1 cut(s) 2830
StyD4I CCNGG 2 cut(s) 1678, 2271
StyI CCWWGG 4 cut(s) 1143, 2359, 2526, 3017
TaaI ACNGT 6 cut(s) 568, 1549, 2306, 2606, 2802, 2909
TaiI ACGT 2 cut(s) 1125, 1185
TaqI TCGA 4 cut(s) 396, 1448, 2659, 2937
TatI WGTACW 5 cut(s) 1041, 1250, 1263, 1476, 2413
TfiI GAWTC 4 cut(s) 649, 1744, 1794, 2396
TscAI CASTG 8 cut(s) 83, 651, 709, 1368, 1396, 2409, 2684, 2965
TseFI GTSAC 1 cut(s) 1414
TseI GCWGC 2 cut(s) 2030, 2200
Tsp45I GTSAC 1 cut(s) 1414
TspDTI ATGAA 9 cut(s) 17, 62, 893, 902, 1742, 2666, 2895, 2928, 2994
TspGWI ACGGA 4 cut(s) 777, 858, 1346, 1627
TspRI CASTG 8 cut(s) 83, 651, 709, 1368, 1396, 2409, 2684, 2965
Van91I CCANNNNNTGG 1 cut(s) 2819
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 9 cut(s) 491, 923, 1802, 2081, 2306, 2449, 2751, 2868, 3021
VspI ATTAAT 1 cut(s) 896
XagI CCTNNNNNAGG 1 cut(s) 1788
XapI RAATTY 5 cut(s) 586, 711, 1316, 1352, 2165
XbaI TCTAGA 2 cut(s) 772, 1738
XceI RCATGY 2 cut(s) 556, 1167
XcmI CCANNNNNNNNNTGG 1 cut(s) 1855
XmaJI CCTAGG 1 cut(s) 2359
XmiI GTMKAC 5 cut(s) 1695, 2088, 2601, 2659, 2797
XmnI GAANNNNTTC 3 cut(s) 1184, 1974, 2886
XspI CTAG 8 cut(s) 71, 542, 765, 773, 792, 1739, 1785, 2360
ZrmI AGTACT 2 cut(s) 1043, 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.