Rorug02G0544000

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000317
Physical Location & Seq
Forward (+)
67269656 .. 67280113
10458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0544000.1

Sequence Viewer

Length: 345 bp
ATGTTGGAGAGATTGAAGCATACCCAAACCCAGCAATCGAGAGAAGGCAGGCATGACGATGACGACGCATCTCTCTCTGAATTCCTTGCCTCCATAATGGACTACACTCCCACCATACCTGACGAGCTTGTGGAGCATTACTTGGCCAAAACCGGCTTTCAGTCTCCCGACTTTCGATTAATTAGGCTGGTAGCTGTTGCCACACAAAAGTTTGTCGCTGAGGTTGCAACTGATGCTCTACAGCAATGCAAAGCAAGACAGGCAGCAGTGGTGAAAGACAAAAGGGACAAACAGCAAAAGGATAAGCGCCCAATATTGACTATAGAAGACAAAGGCATTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

114

Amino Acids

12.97

Weight (kDa)

6.29

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF10 PF03540 25 - 110 3.4e-28 Transcription initiation factor TFIID 23-30kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 80
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 2 cut(s) 127, 194
AluI AGCT 2 cut(s) 127, 194
Alw26I GTCTC 1 cut(s) 168
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 80
AseI ATTAAT 1 cut(s) 179
AspLEI GCGC 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 283
BalI TGGCCA 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 168
BfmI CTRYAG 2 cut(s) 239, 321
BfoI RGCGCY 1 cut(s) 310
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmsI GCATC 2 cut(s) 77, 223
BpiI GAAGAC 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 152
Bse3DI GCAATG 2 cut(s) 251, 336
BseMI GCAATG 2 cut(s) 251, 336
BseMII CTCAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 275
BseYI CCCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 1 cut(s) 146
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 251, 336
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 168
BstMWI GCNNNNNNNGC 4 cut(s) 133, 224, 233, 260
BstSFI CTRYAG 2 cut(s) 239, 321
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 333
BsuRI GGCC 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 152
CseI GACGC 1 cut(s) 74
CviAII CATG 1 cut(s) 53
CviJI RGCY 5 cut(s) 127, 146, 156, 187, 194
CviKI_1 RGCY 5 cut(s) 127, 146, 156, 187, 194
DdeI CTNAG 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 80
FaeI CATG 1 cut(s) 56
FaiI YATR 5 cut(s) 21, 54, 95, 116, 323
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 264
GsaI CCCAGC 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 309
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 39, 167
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 227, 249
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 224, 233, 260
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 6 cut(s) 34, 44, 132, 166, 173, 245
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 2 cut(s) 77, 223
MboII GAAGA 1 cut(s) 338
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 2 cut(s) 80, 180
MluNI TGGCCA 1 cut(s) 146
MnlI CCTC 2 cut(s) 100, 214
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 146
MspI CCGG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 133, 224, 233, 260
NlaIII CATG 1 cut(s) 56
PkrI GCNGC 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 264
SetI ASST 4 cut(s) 121, 129, 196, 225
SfaNI GCATC 2 cut(s) 77, 223
SfcI CTRYAG 2 cut(s) 239, 321
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 2 cut(s) 80, 180
SspI AATATT 1 cut(s) 315
TaqI TCGA 2 cut(s) 38, 175
TasI AATT 2 cut(s) 80, 180
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 273
TseI GCWGC 1 cut(s) 263
TspRI CASTG 1 cut(s) 273
VspI ATTAAT 1 cut(s) 179
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.