RchiOBHm_Chr2g0169861

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000317
Physical Location & Seq
Forward (+)
83982923 .. 83983386
464 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53742

Sequence Viewer

Length: 411 bp
ATGTCAGATAAGATTGACGAATTGGAGATAATCGAAGCAGCTAAGGCAGCCAATGCTCATGATTTCATCTCGGGACTCAAGGAGGGATACAACACCTCATGTGGTAACAGAGGAGTACAACTGTCTGGGGGACAGAAGCAACGCATTGCTATAGCCAGAGCTATATTGAGGAACCCGGTGGTGGTGCAAGATGCGCTAGAGCGCGTGATGGTGGGGAGGATTAGTGTGGTGGTGGCACACAGGTTAAGTACCATACAACACTGTGATCTTATCACTGTCCTTGATAAAGGGAGGGTAGTCGAGAAAGGGAGTCACCCGTCTCTTTTGGCCAAAGGGCCTAAGGGTTCTTACTACTCATTGGTTAGCCTGCAGAGGACACCATCTGTATCAGAGCTTACCAAATTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

136

Amino Acids

14.69

Weight (kDa)

9.43

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 12 - 61 2.7e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 327
AfaI GTAC 2 cut(s) 117, 250
AfiI CCNNNNNNNGG 1 cut(s) 181
AluBI AGCT 3 cut(s) 41, 161, 394
AluI AGCT 3 cut(s) 41, 161, 394
Alw26I GTCTC 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 2 cut(s) 327, 335
ApeKI GCWGC 2 cut(s) 38, 47
AspLEI GCGC 2 cut(s) 196, 204
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 70
AxyI CCTNAGG 1 cut(s) 339
BalI TGGCCA 1 cut(s) 329
BbvI GCAGC 2 cut(s) 50, 59
BccI CCATC 2 cut(s) 202, 388
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 2 cut(s) 150, 368
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 2 cut(s) 39, 48
BlsI GCNGC 2 cut(s) 40, 49
Bme1390I CCNGG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 181
Bpu10I CCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 50, 59
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 329, 337
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 87, 144
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 324
BsmBI CGTCTC 1 cut(s) 324
BsmFI GGGAC 2 cut(s) 87, 144
BsnI GGCC 2 cut(s) 329, 337
BsoBI CYCGRG 1 cut(s) 70
Bsp143I GATC 1 cut(s) 265
BspANI GGCC 2 cut(s) 329, 337
BspFNI CGCG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 144
BssMI GATC 1 cut(s) 265
Bst4CI ACNGT 3 cut(s) 123, 263, 277
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 42, 339
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 2 cut(s) 196, 204
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 193
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 2 cut(s) 150, 368
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 50, 59
Bsu36I CCTNAGG 1 cut(s) 339
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 329, 337
BtsIMutI CAGTG 2 cut(s) 259, 273
Cac8I GCNNGC 1 cut(s) 368
CciI TCATGA 1 cut(s) 58
CfoI GCGC 2 cut(s) 196, 204
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 116, 249
CviAII CATG 3 cut(s) 59, 99, 408
CviJI RGCY 8 cut(s) 41, 50, 155, 161, 329, 337, 366, 394
CviKI_1 RGCY 8 cut(s) 41, 50, 155, 161, 329, 337, 366, 394
CviQI GTAC 2 cut(s) 116, 249
DdeI CTNAG 2 cut(s) 42, 339
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 335
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 3 cut(s) 62, 102, 411
FaiI YATR 6 cut(s) 60, 100, 152, 164, 254, 409
FaqI GGGAC 2 cut(s) 87, 144
FatI CATG 3 cut(s) 58, 98, 407
Fnu4HI GCNGC 2 cut(s) 39, 48
Fsp4HI GCNGC 2 cut(s) 39, 48
FspBI CTAG 1 cut(s) 197
GlaI GCGC 2 cut(s) 195, 203
GluI GCNGC 2 cut(s) 39, 48
HaeIII GGCC 2 cut(s) 329, 337
HapII CCGG 1 cut(s) 176
HhaI GCGC 2 cut(s) 196, 204
Hin1II CATG 3 cut(s) 62, 102, 411
Hin6I GCGC 2 cut(s) 194, 202
HinP1I GCGC 2 cut(s) 194, 202
HinfI GANTC 2 cut(s) 75, 310
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 7, 391
Hpy188III TCNNGA 3 cut(s) 59, 72, 301
HpyCH4III ACNGT 3 cut(s) 123, 263, 277
HpyCH4V TGCA 2 cut(s) 187, 370
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 193
HpyF3I CTNAG 2 cut(s) 42, 339
Hsp92II CATG 3 cut(s) 62, 102, 411
HspAI GCGC 2 cut(s) 194, 202
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 111, 169, 189, 226, 380
Lsp1109I GCAGC 2 cut(s) 50, 59
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 104, 311
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 2 cut(s) 20, 401
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 2 cut(s) 69, 319
MnlI CCTC 7 cut(s) 76, 104, 106, 162, 210, 285, 366
Mox20I TGGCCA 1 cut(s) 329
MscI TGGCCA 1 cut(s) 329
MseI TTAA 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 329
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 4 cut(s) 44, 47, 53, 193
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 265
NlaIII CATG 3 cut(s) 62, 102, 411
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 311
PagI TCATGA 1 cut(s) 58
PkrI GCNGC 2 cut(s) 40, 49
PleI GAGTC 2 cut(s) 69, 318
PpsI GAGTC 2 cut(s) 69, 318
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 372
RsaI GTAC 2 cut(s) 117, 250
RsaNI GTAC 2 cut(s) 116, 249
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 2 cut(s) 39, 48
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 2 cut(s) 69, 319
ScrFI CCNGG 1 cut(s) 176
SetI ASST 5 cut(s) 43, 98, 163, 245, 396
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 2 cut(s) 150, 368
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 20, 401
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 123, 263, 277
TaqI TCGA 2 cut(s) 33, 300
TasI AATT 2 cut(s) 20, 401
TatI WGTACW 1 cut(s) 115
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 2 cut(s) 266, 280
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 2 cut(s) 38, 47
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 2 cut(s) 266, 280
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.