Rh2BG627800

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000317
Physical Location & Seq
Forward (+)
84919338 .. 84921312
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG627800.1

Sequence Viewer

Length: 1257 bp
ATGAGTACCATTGAAGACAAAAGCAATAATGTTGGCATTAAGAAGAAGAAAATTAGGTCGATTCGCTCAATTTTTAAGCATGCAAATGCTGTCGATGAGTTCTTGATGACTCTGGGGTTTCTTGGAGTTGTTGGTGATAGGCTCTCTTTACGGATGTCAATTGTTTTTAATAATGGTTTGGTGAACAATATGGGAAGAGGTGGAGTGTTTTATAAGGCATGTCTCCTCTTCTCATTTGTCACACACACAACCAGTGATCTCTCTTGGCTTTCTGATACAAACAAAATAATGTCTTTCTTCTACTTGGCTTGTGCATCATGGCTTACTTGTTTCCTAGAGGGGTTTTATTGGACAAGAACTGGGGAGAGACAAGCTGCAAAAATGAGAACAAAGTATTTGAAAGCGGTGTTACGCCAAGAGGTAGCTTACTTAGATTCACATCAAACAAGCGCCTCTGAGGTTGTAATGAGCATGTCAAATGACATTCAGATCATTCAAGATGTTCTCAGTGAAAAGGTGCCAGACTTCTTAACTAGAGTCTCTAGTTGCAAGTTACGCGATACCATTTGTATTGATGTGGGAACTGGCTTTGGTTGGACTCCCTTTTATATTACTTCTGGTAGCAGAATGGTTATATACCATGGTGCTCTAGGAGGGACTGTTTTTGCTGTTGGTGTTTCACTGGTCAGTGGAGCAATGGCAATGGGTTTTGCTTTATCAAACTTAAAGTACATTGCAGAAGCATGCTCAGCTGAAGAGAATCTCATGAAGGTTATCAATCGAGTTCCTGAAATTGATTTAGATAACATGGAAGGCACAGTTCTGGAGGATGTCTCGAGTGAAGTCCAATTTAATCATGTTAAGTTTGCATATCCATCCAGGCCTGAGAGCATTATTCTGAACAACTTTTCTCTAACCATACCAGCCGGAAAGACTGTTGCCTTGGTTGGCTCAAGTGGATCAGGAAAATCAACAGTGACGTTACCGATGGAAAGATTTTATGACCCACTTGAGGGACAAATTCTACTAGATGGGTTTGCCATTGACAAGTTACAGCTCAAGTGGCTAAGGTCTAAAATGGCATCCGTAAGCCAAGAGCCTTCATTGTTCTCAACCACCATTAAGGAGAATATACTTTTCGGCAAGGAGGATGGCACAATGGAGGAAGTAGTTGAGGCTGCCAAGGCTAGCAATGCTCATAATTTCATATGTCAGTTGCCTCATGGGTATGACACCCAGGTTTGTCCTGCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

418

Amino Acids

46.16

Weight (kDa)

6.41

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 94 - 182 2.2e-16 ABC transporter transmembrane region
ABC_tran PF00005 300 - 403 2.9e-17 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 517
AccII CGCG 1 cut(s) 558
AciI CCGC 1 cut(s) 404
AclWI GGATC 1 cut(s) 967
AcsI RAATTY 1 cut(s) 1020
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 7, 731
AfiI CCNNNNNNNGG 2 cut(s) 1012, 1013
AgsI TTSAA 3 cut(s) 14, 400, 497
AjnI CCWGG 2 cut(s) 878, 1236
AluBI AGCT 4 cut(s) 374, 425, 752, 1057
AluI AGCT 4 cut(s) 374, 425, 752, 1057
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 4 cut(s) 227, 361, 544, 838
AlwI GGATC 1 cut(s) 967
Ama87I CYCGRG 1 cut(s) 835
AoxI GGCC 1 cut(s) 881
ApeKI GCWGC 2 cut(s) 374, 1178
ApoI RAATTY 1 cut(s) 1020
AspLEI GCGC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 146, 193
AsuNHI GCTAGC 1 cut(s) 1187
AvaI CYCGRG 1 cut(s) 835
BanI GGYRCC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 2 cut(s) 361, 1165
BccI CCATC 4 cut(s) 883, 982, 1025, 1145
BciT130I CCWGG 2 cut(s) 880, 1238
BcoDI GTCTC 4 cut(s) 227, 361, 544, 838
BfaI CTAG 7 cut(s) 335, 534, 543, 650, 1028, 1188, 1255
BfoI RGCGCY 1 cut(s) 453
BisI GCNGC 2 cut(s) 375, 1179
BlpI GCTNAGC 1 cut(s) 748
BlsI GCNGC 2 cut(s) 376, 1180
Bme1390I CCNGG 2 cut(s) 880, 1238
BmeT110I CYCGRG 1 cut(s) 835
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 2 cut(s) 880, 1238
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 323, 1091
BmtI GCTAGC 1 cut(s) 1191
BmuI ACTGGG 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 818, 850
BpmI CTGGAG 1 cut(s) 845
Bpu10I CCTNAGC 1 cut(s) 1067
Bpu1102I GCTNAGC 1 cut(s) 748
BpuEI CTTGAG 3 cut(s) 937, 1031, 1043
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 4 cut(s) 640, 942, 1182, 1236
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 2 cut(s) 1012, 1013
Bse1I ACTGG 4 cut(s) 252, 364, 589, 687
Bse3DI GCAATG 4 cut(s) 702, 708, 732, 1198
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 880, 1238
BseDI CCNNGG 4 cut(s) 640, 942, 1182, 1236
BseGI GGATG 5 cut(s) 159, 835, 875, 1082, 1156
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 1012, 1013
BseMI GCAATG 4 cut(s) 702, 708, 732, 1198
BseMII CTCAG 4 cut(s) 447, 520, 762, 876
BseNI ACTGG 4 cut(s) 252, 364, 589, 687
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 361, 1165
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 1 cut(s) 883
BshNI GGYRCC 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 835
BsiSI CCGG 1 cut(s) 927
BslFI GGGAC 2 cut(s) 670, 1029
BslI CCNNNNNNNGG 2 cut(s) 1012, 1013
BsmAI GTCTC 4 cut(s) 227, 361, 544, 838
BsmFI GGGAC 2 cut(s) 670, 1029
BsnI GGCC 1 cut(s) 883
BsoBI CYCGRG 1 cut(s) 835
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 3 cut(s) 256, 489, 959
Bsp1720I GCTNAGC 1 cut(s) 748
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 883
BspCNI CTCAG 4 cut(s) 448, 519, 761, 877
BspFNI CGCG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 1 cut(s) 519
BspOI GCTAGC 1 cut(s) 1191
BspPI GGATC 1 cut(s) 967
BspT107I GGYRCC 1 cut(s) 517
BsrDI GCAATG 4 cut(s) 702, 708, 732, 1198
BsrI ACTGG 4 cut(s) 252, 364, 589, 687
BssECI CCNNGG 4 cut(s) 640, 942, 1182, 1236
BssMI GATC 3 cut(s) 256, 489, 959
BssT1I CCWWGG 3 cut(s) 640, 942, 1182
Bst2UI CCWGG 2 cut(s) 880, 1238
Bst4CI ACNGT 4 cut(s) 661, 820, 937, 976
Bst6I CTCTTC 3 cut(s) 190, 233, 750
BstC8I GCNNGC 3 cut(s) 81, 745, 1189
BstDEI CTNAG 6 cut(s) 430, 456, 506, 748, 885, 1067
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 5 cut(s) 159, 835, 875, 1082, 1156
BstFNI CGCG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 3 cut(s) 259, 492, 962
BstMAI GTCTC 4 cut(s) 227, 361, 544, 838
BstMBI GATC 3 cut(s) 256, 489, 959
BstMWI GCNNNNNNNGC 5 cut(s) 555, 749, 1063, 1184, 1193
BstNI CCWGG 2 cut(s) 880, 1238
BstNSI RCATGY 4 cut(s) 83, 222, 475, 747
BstSCI CCNGG 2 cut(s) 878, 1236
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 2 cut(s) 361, 1165
BstV2I GAAGAC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 883
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 5 cut(s) 159, 835, 875, 1082, 1156
BtsIMutI CAGTG 5 cut(s) 259, 514, 680, 694, 981
Cac8I GCNNGC 3 cut(s) 81, 745, 1189
CciI TCATGA 1 cut(s) 765
CfoI GCGC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 6, 730
CviQI GTAC 2 cut(s) 6, 730
DdeI CTNAG 6 cut(s) 430, 456, 506, 748, 885, 1067
DpnI GATC 3 cut(s) 258, 491, 961
DpnII GATC 3 cut(s) 256, 489, 959
Eam1104I CTCTTC 3 cut(s) 190, 233, 750
EarI CTCTTC 3 cut(s) 190, 233, 750
Eco130I CCWWGG 3 cut(s) 640, 942, 1182
Eco147I AGGCCT 1 cut(s) 883
Eco57I CTGAAG 1 cut(s) 774
Eco88I CYCGRG 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 878, 1236
EcoT14I CCWWGG 3 cut(s) 640, 942, 1182
ErhI CCWWGG 3 cut(s) 640, 942, 1182
FaqI GGGAC 2 cut(s) 670, 1029
FauNDI CATATG 1 cut(s) 1208
Fnu4HI GCNGC 2 cut(s) 375, 1179
FokI GGATG 5 cut(s) 166, 842, 862, 1069, 1163
Fsp4HI GCNGC 2 cut(s) 375, 1179
FspBI CTAG 7 cut(s) 335, 534, 543, 650, 1028, 1188, 1255
GlaI GCGC 1 cut(s) 451
GluI GCNGC 2 cut(s) 375, 1179
GsuI CTGGAG 1 cut(s) 845
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 1 cut(s) 883
HapII CCGG 1 cut(s) 927
HhaI GCGC 1 cut(s) 452
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HinfI GANTC 6 cut(s) 61, 109, 434, 537, 598, 760
HpaII CCGG 1 cut(s) 927
HphI GGTGA 2 cut(s) 146, 193
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 4 cut(s) 274, 457, 489, 900
Hpy188III TCNNGA 7 cut(s) 103, 497, 766, 788, 824, 835, 963
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 763, 806, 1110
HpyCH4III ACNGT 4 cut(s) 661, 820, 937, 976
HpyCH4IV ACGT 1 cut(s) 980
HpyCH4V TGCA 6 cut(s) 83, 314, 377, 549, 737, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 555, 749, 1063, 1184, 1193
HpyF3I CTNAG 6 cut(s) 430, 456, 506, 748, 885, 1067
HpySE526I ACGT 1 cut(s) 980
HspAI GCGC 1 cut(s) 450
Kzo9I GATC 3 cut(s) 256, 489, 959
LmnI GCTCC 1 cut(s) 692
Lsp1109I GCAGC 2 cut(s) 361, 1165
LweI GCATC 2 cut(s) 323, 1091
MaeI CTAG 7 cut(s) 335, 534, 543, 650, 1028, 1188, 1255
MaeII ACGT 1 cut(s) 980
MaeIII GTNAC 6 cut(s) 238, 408, 552, 976, 981, 1050
MalI GATC 3 cut(s) 258, 491, 961
MboI GATC 3 cut(s) 256, 489, 959
MboII GAAGA 7 cut(s) 26, 55, 58, 207, 220, 289, 767
MfeI CAATTG 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 7 cut(s) 51, 69, 159, 792, 848, 1020, 1201
MlyI GAGTC 3 cut(s) 103, 546, 592
MmeI TCCRAC 1 cut(s) 575
MseI TTAA 8 cut(s) 39, 75, 168, 530, 725, 852, 861, 1122
MslI CAYNNNNRTG 2 cut(s) 84, 1227
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 1 cut(s) 927
MspR9I CCNGG 2 cut(s) 880, 1238
MunI CAATTG 1 cut(s) 159
MvaI CCWGG 2 cut(s) 880, 1238
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 5 cut(s) 555, 749, 1063, 1184, 1193
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 1208
NdeII GATC 3 cut(s) 256, 489, 959
NheI GCTAGC 1 cut(s) 1187
NlaIV GGNNCC 1 cut(s) 519
NmuCI GTSAC 2 cut(s) 238, 976
NspI RCATGY 4 cut(s) 83, 222, 475, 747
PaeI GCATGC 2 cut(s) 83, 747
PaeR7I CTCGAG 1 cut(s) 835
PagI TCATGA 1 cut(s) 765
PceI AGGCCT 1 cut(s) 883
PfeI GAWTC 3 cut(s) 61, 434, 760
PkrI GCNGC 2 cut(s) 376, 1180
PleI GAGTC 3 cut(s) 103, 545, 592
PpsI GAGTC 3 cut(s) 103, 545, 592
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 878, 1236
PspGI CCWGG 2 cut(s) 878, 1236
PspN4I GGNNCC 1 cut(s) 519
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 2 cut(s) 7, 731
RsaNI GTAC 2 cut(s) 6, 730
RseI CAYNNNNRTG 2 cut(s) 84, 1227
SaqAI TTAA 8 cut(s) 39, 75, 168, 530, 725, 852, 861, 1122
SatI GCNGC 2 cut(s) 375, 1179
Sau3AI GATC 3 cut(s) 256, 489, 959
SchI GAGTC 3 cut(s) 103, 546, 592
ScrFI CCNGG 2 cut(s) 880, 1238
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 2 cut(s) 323, 1091
Sfr274I CTCGAG 1 cut(s) 835
SlaI CTCGAG 1 cut(s) 835
SmiMI CAYNNNNRTG 2 cut(s) 84, 1227
SmlI CTYRAG 4 cut(s) 835, 952, 1010, 1058
SmoI CTYRAG 4 cut(s) 835, 952, 1010, 1058
SphI GCATGC 2 cut(s) 83, 747
Sse9I AATT 7 cut(s) 51, 69, 159, 792, 848, 1020, 1201
SseBI AGGCCT 1 cut(s) 883
SsiI CCGC 1 cut(s) 404
SspMI CTAG 7 cut(s) 335, 534, 543, 650, 1028, 1188, 1255
StuI AGGCCT 1 cut(s) 883
StyD4I CCNGG 2 cut(s) 878, 1236
StyI CCWWGG 3 cut(s) 640, 942, 1182
TaaI ACNGT 4 cut(s) 661, 820, 937, 976
TaiI ACGT 1 cut(s) 983
TaqI TCGA 4 cut(s) 59, 93, 781, 836
TasI AATT 7 cut(s) 51, 69, 159, 792, 848, 1020, 1201
TatI WGTACW 1 cut(s) 729
TfiI GAWTC 3 cut(s) 61, 434, 760
Tru1I TTAA 8 cut(s) 39, 75, 168, 530, 725, 852, 861, 1122
Tru9I TTAA 8 cut(s) 39, 75, 168, 530, 725, 852, 861, 1122
TscAI CASTG 5 cut(s) 259, 514, 687, 694, 981
TseFI GTSAC 2 cut(s) 238, 976
TseI GCWGC 2 cut(s) 374, 1178
Tsp45I GTSAC 2 cut(s) 238, 976
TspDTI ATGAA 3 cut(s) 782, 1092, 1195
TspGWI ACGGA 2 cut(s) 166, 1075
TspRI CASTG 5 cut(s) 259, 514, 687, 694, 981
XapI RAATTY 1 cut(s) 1020
XceI RCATGY 4 cut(s) 83, 222, 475, 747
XhoI CTCGAG 1 cut(s) 835
XspI CTAG 7 cut(s) 335, 534, 543, 650, 1028, 1188, 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.