Rw2G051020

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000317
Physical Location & Seq
Forward (+)
78683024 .. 78683833
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051020.1

Sequence Viewer

Length: 687 bp
ATGGGTCTAATAATTGCATGGAGGCTTGCCATACTCATCATTGCTGTCCAACCCATAGTCATCCTCAGCCTCTATGCTAAGCGTGTCCTACTCAAAAGAATATCCATCAGAGCCACCAAAGCCCAAGAGGAAAGTTGTAAGCTTGCAGCTGAAGCTATCTACAACCACCGAACTGTTACTGCCTTCTCGGCCCAGAACAGGGTTTTGAAAATGCTAGACAAGGCCCAAGAAACCCCACGTAGAGAAAACCTACAACAATCGTGGTTTGCAGGTATCGGACTCGGGTTCGCCGAGAGCATTATAGTCATCAATTGGGGGCTGAGTTATTGGTATGGCAGCAGGCTTGTCCACCAAGGCTACCTTACTCCAAGATCAGTCTTTGAGACTATCCTCATTTTAGTAACTACCGGTTGGGTCATAGCAAATGTCGGAAGCATGACATCGGATCTTGCCATCGGCTTGGATGCAATCACGCCCAATGTGATGGTCCTCCAAGGCTTCTCTATCCACATTGAAGCAGGAAAGTCGATAGCATTGGTCGGACAAAGTGGATCAGGTAAGTCAATAGTCATCGCATTAATCGAGAGGTTCTATGATCCAAACCAAGGTGTAGTGGAAATAGATGGTCGAGATGTAAAATCATACCACCTTACGTCATTGAGGAAACACATGGCACTAGTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

228

Amino Acids

25.16

Weight (kDa)

9.64

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 1 - 133 7e-20 ABC transporter transmembrane region
ABC_tran PF00005 164 - 227 2.1e-12 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AclWI GGATC 3 cut(s) 453, 559, 590
AcuI CTGAAG 1 cut(s) 171
AfiI CCNNNNNNNGG 3 cut(s) 198, 199, 605
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 2 cut(s) 208, 515
AhlI ACTAGT 1 cut(s) 676
AluBI AGCT 4 cut(s) 142, 149, 155, 684
AluI AGCT 4 cut(s) 142, 149, 155, 684
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 3 cut(s) 453, 559, 590
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 189, 222
ApeKI GCWGC 2 cut(s) 146, 336
AseI ATTAAT 1 cut(s) 578
AsiGI ACCGGT 1 cut(s) 407
AspS9I GGNCC 3 cut(s) 190, 223, 487
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 487
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 158, 348
BccI CCATC 4 cut(s) 113, 461, 478, 617
BcgI CGANNNNNNTGC 2 cut(s) 507, 541
BcoDI GTCTC 1 cut(s) 377
BcuI ACTAGT 1 cut(s) 676
BfaI CTAG 2 cut(s) 215, 677
BfuAI ACCTGC 1 cut(s) 260
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 147, 337
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 2 cut(s) 148, 338
Bme18I GGWCC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 3 cut(s) 190, 223, 487
BmsI GCATC 1 cut(s) 454
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 352, 493, 604
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 199, 605
Bse118I RCCGGY 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 3 cut(s) 352, 493, 604
BseGI GGATG 2 cut(s) 60, 469
BseLI CCNNNNNNNGG 3 cut(s) 198, 199, 605
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 79, 311
BseXI GCAGC 2 cut(s) 158, 348
BshFI GGCC 2 cut(s) 191, 224
BshTI ACCGGT 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 198, 199, 605
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 2 cut(s) 191, 224
BsoBI CYCGRG 1 cut(s) 281
Bsp143I GATC 4 cut(s) 371, 445, 551, 595
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 2 cut(s) 191, 224
BspCNI CTCAG 2 cut(s) 78, 312
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 3 cut(s) 453, 559, 590
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 352, 493, 604
BssMI GATC 4 cut(s) 371, 445, 551, 595
BssT1I CCWWGG 3 cut(s) 352, 493, 604
Bst4CI ACNGT 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 27, 144, 341
BstDEI CTNAG 3 cut(s) 65, 78, 320
BstF5I GGATG 2 cut(s) 60, 469
BstKTI GATC 4 cut(s) 374, 448, 554, 598
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 4 cut(s) 371, 445, 551, 595
BstMWI GCNNNNNNNGC 3 cut(s) 119, 152, 188
BstV1I GCAGC 2 cut(s) 158, 348
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 2 cut(s) 460, 484
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 2 cut(s) 191, 224
BtgZI GCGATG 1 cut(s) 556
BtsCI GGATG 2 cut(s) 60, 469
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 3 cut(s) 27, 144, 341
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 3 cut(s) 190, 223, 487
CspAI ACCGGT 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 3 cut(s) 18, 436, 670
DdeI CTNAG 3 cut(s) 65, 78, 320
DpnI GATC 4 cut(s) 373, 447, 553, 597
DpnII GATC 4 cut(s) 371, 445, 551, 595
Eco130I CCWWGG 3 cut(s) 352, 493, 604
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 281
EcoT14I CCWWGG 3 cut(s) 352, 493, 604
ErhI CCWWGG 3 cut(s) 352, 493, 604
FaeI CATG 3 cut(s) 21, 439, 673
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 3 cut(s) 17, 435, 669
Fnu4HI GCNGC 2 cut(s) 147, 337
FokI GGATG 2 cut(s) 47, 476
Fsp4HI GCNGC 2 cut(s) 147, 337
FspBI CTAG 2 cut(s) 215, 677
GluI GCNGC 2 cut(s) 147, 337
HaeIII GGCC 2 cut(s) 191, 224
HapII CCGG 1 cut(s) 408
Hin1II CATG 3 cut(s) 21, 439, 673
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 279
HpaII CCGG 1 cut(s) 408
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 5 cut(s) 110, 278, 431, 445, 542
Hpy188III TCNNGA 2 cut(s) 583, 629
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 238, 653
HpyCH4V TGCA 4 cut(s) 17, 146, 269, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 152, 188
HpyF3I CTNAG 3 cut(s) 65, 78, 320
HpySE526I ACGT 2 cut(s) 238, 653
Hsp92II CATG 3 cut(s) 21, 439, 673
Kzo9I GATC 4 cut(s) 371, 445, 551, 595
LpnPI CCDG 7 cut(s) 184, 206, 255, 325, 421, 504, 540
Lsp1109I GCAGC 2 cut(s) 158, 348
LweI GCATC 1 cut(s) 454
MaeI CTAG 2 cut(s) 215, 677
MaeII ACGT 2 cut(s) 238, 653
MaeIII GTNAC 2 cut(s) 175, 400
MalI GATC 4 cut(s) 373, 447, 553, 597
MboI GATC 4 cut(s) 371, 445, 551, 595
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 445
MluCI AATT 2 cut(s) 12, 310
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 3 cut(s) 73, 409, 520
MnlI CCTC 8 cut(s) 15, 74, 80, 121, 401, 500, 579, 654
MseI TTAA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 408
MunI CAATTG 1 cut(s) 310
MwoI GCNNNNNNNGC 3 cut(s) 119, 152, 188
NdeII GATC 4 cut(s) 371, 445, 551, 595
NlaIII CATG 3 cut(s) 21, 439, 673
NmeAIII GCCGAG 2 cut(s) 167, 316
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 579
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 2 cut(s) 148, 338
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 239
PshBI ATTAAT 1 cut(s) 578
PspPI GGNCC 3 cut(s) 190, 223, 487
PsuI RGATCY 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 578
SatI GCNGC 2 cut(s) 147, 337
Sau3AI GATC 4 cut(s) 371, 445, 551, 595
Sau96I GGNCC 3 cut(s) 190, 223, 487
SchI GAGTC 1 cut(s) 273
SfaNI GCATC 1 cut(s) 454
SinI GGWCC 1 cut(s) 487
SpeI ACTAGT 1 cut(s) 676
Sse9I AATT 2 cut(s) 12, 310
SspMI CTAG 2 cut(s) 215, 677
StyI CCWWGG 3 cut(s) 352, 493, 604
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 2 cut(s) 241, 656
TaqI TCGA 3 cut(s) 527, 582, 628
TasI AATT 2 cut(s) 12, 310
Tru1I TTAA 1 cut(s) 578
Tru9I TTAA 1 cut(s) 578
TseI GCWGC 2 cut(s) 146, 336
VpaK11BI GGWCC 1 cut(s) 487
VspI ATTAAT 1 cut(s) 578
XspI CTAG 2 cut(s) 215, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.