Rh2AG615500

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000317
Physical Location & Seq
Forward (+)
84029438 .. 84030504
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG615500.1

Sequence Viewer

Length: 435 bp
ATGAGTACCGGTGCAGACAAAAGCAATAATGTTGGCATTAAGAAGAAGAAAATTGGGTTGATTCGCTCAATTTTTAAGCATGCAGATGCTGTCGATAAGTTCTTGATGACTCTGGGGTTTCTTGGAGCTGTTGGTGATAGACTCTCTTTACAAATGTCGATTGTTTTTAATAGTGGTTTGGTGAACAATATGGGAAGAGGTAGAGTGTTTTATAAGGCATGTCTCCTCTTCTCATTTGTCACACACACAACCAGTGATCTCTCTTGGCTTTCTGATACAGTGCCAGACTTCTTAACTAGACTCTCCAGTTTCATTGCAAGTTACGCGATAGCCTTTGGTTGGACTCCCCTTTATATTACTTCTGGTAATTCCTGGTTAGATTTGTGGAAGAACCTTAACAAGAATAGCAGGGAAGAGAAGACAAGAACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

144

Amino Acids

16.1

Weight (kDa)

9.88

Isoelectric Point (pI)

24.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccII CGCG 1 cut(s) 326
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 339
AgeI ACCGGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 89
AsiGI ACCGGT 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 146, 193
BbsI GAAGAC 1 cut(s) 425
BciT130I CCWGG 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 252, 306
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 252, 306
BseRI GAGGAG 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 326
BshTI ACCGGT 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 256
BspFNI CGCG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 2 cut(s) 252, 306
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 3 cut(s) 190, 233, 408
BstC8I GCNNGC 1 cut(s) 81
BstFNI CGCG 1 cut(s) 326
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 2 cut(s) 83, 222
BstSCI CCNGG 1 cut(s) 371
BstUI CGCG 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 425
BtsIMutI CAGTG 2 cut(s) 259, 285
Cac8I GCNNGC 1 cut(s) 81
CaiI CAGNNNCTG 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 8
Csp6I GTAC 1 cut(s) 6
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 2 cut(s) 80, 219
CviJI RGCY 3 cut(s) 128, 268, 332
CviKI_1 RGCY 3 cut(s) 128, 268, 332
CviQI GTAC 1 cut(s) 6
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 190, 233, 408
EarI CTCTTC 3 cut(s) 190, 233, 408
EcoRII CCWGG 1 cut(s) 371
FaeI CATG 2 cut(s) 83, 222
FaiI YATR 5 cut(s) 81, 191, 213, 220, 354
FatI CATG 2 cut(s) 79, 218
FspBI CTAG 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 289
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 83, 222
HinfI GANTC 5 cut(s) 61, 109, 141, 300, 343
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 146, 193
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 14, 83, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
Hsp92II CATG 2 cut(s) 83, 222
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 9 cut(s) 22, 98, 265, 297, 319, 348, 358, 385, 394
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 238, 320
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 7 cut(s) 55, 58, 207, 220, 400, 425, 430
MluCI AATT 4 cut(s) 51, 69, 367, 430
MlyI GAGTC 4 cut(s) 103, 135, 294, 337
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 2 cut(s) 191, 236
MseI TTAA 6 cut(s) 39, 75, 168, 293, 396, 433
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 83, 222
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 2 cut(s) 83, 222
PaeI GCATGC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 8
PleI GAGTC 4 cut(s) 103, 135, 294, 337
PpsI GAGTC 4 cut(s) 103, 135, 294, 337
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 6 cut(s) 39, 75, 168, 293, 396, 433
Sau3AI GATC 1 cut(s) 256
SchI GAGTC 4 cut(s) 103, 135, 294, 337
ScrFI CCNGG 1 cut(s) 373
SetI ASST 3 cut(s) 130, 202, 396
SfaNI GCATC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 84
SphI GCATGC 1 cut(s) 83
Sse9I AATT 4 cut(s) 51, 69, 367, 430
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 93, 158
TasI AATT 4 cut(s) 51, 69, 367, 430
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 6 cut(s) 39, 75, 168, 293, 396, 433
Tru9I TTAA 6 cut(s) 39, 75, 168, 293, 396, 433
TscAI CASTG 2 cut(s) 259, 285
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 301
TspRI CASTG 2 cut(s) 259, 285
XceI RCATGY 2 cut(s) 83, 222
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.