FvH4_6g49760

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000317
Physical Location & Seq
Forward (+)
37205850 .. 37212458
6609 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49760.t1

Sequence Viewer

Length: 3756 bp
ATGGGAGAGAAAATGGAGAGTAAGAAGAAAGGTGGCTCTTCTATAAGCTCAGTTTTCATGCACGCTGATGGTGCTGATAAACTTCTGATGGCTTTGGGTTTGTTCGGAAGCATCGGCGACGGCTGCACAACCCCTCTGGTCTTGTTGATCACTAGCCGCTTGATGAACAACGTCGGCGGCTCCTCGTCCAACGCTCAAGATGCTTTCACGCATAACATCAATAAGAATGCAGTGGCGCTATTGTACTTGGCTTCTGCGTCATTTGTTTGTTGTTTCCTTGAGGGATATTGTTGGACAAGAACCGGTGAGAGACAAGCAGCCAGAATGAGAGTGAGATATTTGAAAGCAGTGTTAAGGCAAGATGTGGGCTACTTTGATTTGCATGTCACAAGCACTTCAGAGGTTATCACGAGCGTCTCTAGTGATAGCCTCGTGATTCAAGACGTTCTTAGTGAAAAGGTGCCAAACTTTGTAATGAACTGCTCTATGTTCCTTGGGAGCTATATCGCAGCATTCATAATGCTGTGGAAGCTAGCCATTGTTGGTTTTCCCTTTTTGCTTCTTCTAGTGATTCCGGGCTTGATATATGGACGGACTCTGATGGGACTGGCTAGGAAGTTAAGAGATGAATACAACAAGGCTGGTACAATAGCCGAACAGACACTGTCATCGATTAGAACCGTGTATGCATTTGTTGGAGAAAATAAGACCATAACTGAGTTCTCCGCAGCTCTTGAAGGATCAGTGAAGTTGGGATTGAGTCAGGGTTTGGCAAAAGGCTTGGCCATTGGTAGCAACGGTGTTGTTTTCGCGATTTGGTCATTCATGTCTTTCTATGGCAGCAGAATGGTCATGTACCATGGCGCTAAGGGAGGCACTGTTTTCGCTGTTGGTGCGGCTATAGCTGTTGGTGGATTGGCATTGGGGGCAGGCTTATCAAACTTGAAGTACTTCTCGGAAGCGTGTTCAGCCGCTGAACGAATAATGGAGGTGATTCGAAGAGTCCCCAAGATCGATTCAGACAACATGGAAGGAGAAATACTAGAGAACGTTTTAGGAGAAGTTGAATTCAAGCACGTAGAATTCGCCTACCCTTCAAGGCCAGAAAGCATTATCTTCCAAGACTTCAACTTAACAGTTCCAGCTGGGAAAACCTTGGCATTGGTAGGTAGTAGTGGCTCTGGAAAATCGACGGTGATTTCAGTGTTGCAGAGATTTTATGATCCTCTTGGGGGAGAGATACTCATAGATGGGGTGGCCATAAACAAGTGTCAGCTCAAGTGGTTGAGGTCACAGATGGGACTGGTGAGCCAAGAGCCTGCGCTGTTTGCTACCAGCATAAAAGAGAACATACTGTTTGGGAAAGAAGATGCTACCATGGAAGAGGTTATTGAGGCTGGTAAAGCTTCTAATGCTCACAATTTCATATCTCAGTTGCCTATGGGATATGATACACAGGTTGGCGAGAGAGGTGTTCAAATGTCGGGAGGGCAGAAGCAAAGAATAGCTATAGCACGAGCAATCATCAAGAAACCACGCATCCTTCTTCTAGACGAAGCCACGAGCGCATTGGACTCGGAATCGGAGCGTGTAGTTCAAGAAGCTCTTGACAAAGCAGCGGTGGGACGAACGACGATCATCATCGCCCACCGCCTCTCAACCATCCGAAACGCCGACATCATTGCCGTTGTTCAAAATGGGCAGGTCATGGAAATGGGCTCACACGACGAGCTATTCCAACGTGAGAATGGTCTCTATACCTCACTTATCCGCTTACAACAGACAGAGAAGCAACCAGAAGAGCAAGCAGGCCATTACGCTTCGTCGTCTATATCAAACATGGACATTCACAACACAAGTAGTCGTAGGTTGTCCATGGTTAGTCGTTCGAGTTCAGCCAACTCATTTGCGCAAGGTCGAGCTTCATCAGTGGTTGCCGGGGAAGATGAGATCGTAGAACGGAAGAAGCTACCTGTCCCATCGTTTAAAAGATTGATAGCTTTGAACCTTCCGGAGTGGAAGCAAGCGCTTTTGGGATGCTTCAGTGCGATACTTTTTGGTGCAGTTCAACCAGCATATGCATTTGCTATGGGATCAATGGTGTCGGTTTATTTTTTGACAGACCATGATGAGATCAAGGAGAAGACGAGGATTTATTCACTTTGCTTTCTAGGGTTGGCTATTTTCTCTTTGCTGGTTAACATTTGTCAGCATTACAACTTTGCCTACATGGGAGAGTACTTGACTAAGAGAGTTAGAGAAAGGATGCTTTCCAAGATCCTTACATTCGAAGTTGGGTGGTTTGATCAAGATGAAAATTCTAGTGGTGCCATTTGCTCTAGACTCGCCAAAGATGCCAATGTGGTAAGATCATTAGTGGGTGATAGGATGGCTCTACTTGTTCAAACCTTCTCAGCTGTGACTGTAGCCTGCACAATGGGTTTGGTCATTGCATGGAGACTTGCCATAGTTATGATAGCAGTGCAACCCATTATCATTGTGAGCTTCTACACCAGACGTGTCCTGCTCAAAACTATGTCGAAGAAAGCCATCAAAGCTCAAGATGAAAGCAGCAAGCTAGCTGCAGAAGCAGTCTCCAACCTCAGAACCATCACTGCCTTCTCATCTCAGGACCGCCTGTTGAAAATGCTAGAAAAGGCCCAAGAAGGCCCACGTAAAGAGAGCATCCGACAATCATGGTATGCAGGGATTGGCCTCGGCTGTTCTCAAAGCCTTACTAGTATCACTTGGGCGTTTGATTTTTGGTACGGAGGCAAGCTCATTACTCAGGGCTACGTCACAGCAAAAGAGCTGTTTGAGACTTTCATGATATTGGTGAGCACCGGCAGGGTTATTGCCGACGCTGGAAGTATGACTTCCGATCTTGCCAAAGGGTCGGATGCTGTTGCTTCTGTATTTGCAGTGTTGGACCGTTACACCAATATAGAACCCGAAGACCCGGAAGGTTGCCAGCCCAAAAGAATAACAGGTGACATAGAACTACGTAACGTGCATTTTGCATACCCTGCTAGACCTGATGTGATGATCTTCAAAGGATTCTCGATCAAAATCGAAGCCGGGAAATCGACTGCTTTAGTGGGACAAAGCGGGTCTGGGAAGTCGACGATTATCGGATTAATCGAAAGGTTTTATGATCCATTGAAAGGAGAAGTGATCATTGACGGTCGAGATGTGAAATCGTACCACCTTAGGTCATTGAGGAAACACATAGCACTTGTTAGCCAAGAGCCAACGCTATTTTCAGGTACCATAAGAGAGAACATCATCTATGGCGTGTCGGATAAGGTCGACGAGTTGGAGATAATCGAAGCAGCAAAGGCAGCCAATGCTCACGAATTCATCTCGAGCCTCAAGGAGGGATATGACACTTCATGTGGAGACCGAGGAGTGCAACTCTCTGGGGGACAGAAGCAACGCATTGCTATAGCTAGAGCTATACTGCGGAACCCGGTGGTGTTACTACTAGACGAGGCGACCAGCGCGCTTGATAGTCAGTCGGAGAAGGTTGTGCAAGATGCGCTAGAGCGAGTGATGGTGGGGAGGACTAGTGTGGTGGTGGCGCACAGGTTGAGTACCATACAACACTGTGATCTTATCACTGTGCTTGATAAAGGGAGGGTAGTGGAGAAAGGGACTCACTCGTCTCTTTTGGCCAAAGGGCCTAAAGGTTCTTACTACTCTCTGGTCAGCCTCCAAAGGACGCCATCCGCATCAGAGTCTACCAAATTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1252

Amino Acids

136.46

Weight (kDa)

8.57

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 31 - 297 4.1e-50 ABC transporter transmembrane region
ABC_tran PF00005 374 - 522 1.4e-33 ABC transporter
ABC_membrane PF00664 677 - 946 3.3e-51 ABC transporter transmembrane region
ABC_tran PF00005 1018 - 1167 4.6e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3661
Acc16I TGCGCA 1 cut(s) 1911
Acc36I ACCTGC 1 cut(s) 1693
Acc65I GGTACC 1 cut(s) 3266
AccB1I GGYRCC 3 cut(s) 460, 2327, 3266
AccI GTMKAC 3 cut(s) 3122, 3309, 3740
AccII CGCG 2 cut(s) 812, 3503
AccIII TCCGGA 1 cut(s) 2011
AclI AACGTT 1 cut(s) 1050
AclWI GGATC 5 cut(s) 748, 1217, 2101, 2272, 3149
AcoI YGGCCR 3 cut(s) 783, 1257, 3672
AcsI RAATTY 4 cut(s) 1067, 1082, 2317, 3356
AcuI CTGAAG 2 cut(s) 381, 2026
AcyI GRCGYC 1 cut(s) 3722
AfaI GTAC 9 cut(s) 245, 646, 857, 950, 2240, 2768, 3203, 3268, 3595
AfeI AGCGCT 1 cut(s) 2028
AfiI CCNNNNNNNGG 3 cut(s) 1232, 3164, 3376
AflIII ACRYGT 1 cut(s) 2518
AgeI ACCGGT 1 cut(s) 302
AhlI ACTAGT 2 cut(s) 2738, 3566
AjiI CACGTC 1 cut(s) 2519
AjuI GAANNNNNNNTTGG 2 cut(s) 3244, 3276
Alw21I GWGCWC 1 cut(s) 2843
Alw26I GTCTC 8 cut(s) 304, 421, 1757, 2452, 2599, 2813, 3393, 3669
AlwI GGATC 5 cut(s) 748, 1217, 2101, 2272, 3149
AlwNI CAGNNNCTG 2 cut(s) 664, 974
Ama87I CYCGRG 1 cut(s) 3364
Aor13HI TCCGGA 1 cut(s) 2011
Aor51HI AGCGCT 1 cut(s) 2028
AoxI GGCC 9 cut(s) 783, 1100, 1257, 1810, 2658, 2668, 2713, 3672, 3680
ApoI RAATTY 4 cut(s) 1067, 1082, 2317, 3356
AseI ATTAAT 1 cut(s) 3137
AsiGI ACCGGT 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 950
Asp718I GGTACC 1 cut(s) 3266
AspS9I GGNCC 5 cut(s) 2632, 2659, 2669, 2929, 3680
AsuC2I CCSGG 5 cut(s) 576, 1939, 2960, 3079, 3470
AsuHPI GGTGA 7 cut(s) 317, 1003, 1207, 1318, 2393, 2848, 3002
AsuII TTCGAA 2 cut(s) 997, 2289
AsuNHI GCTAGC 2 cut(s) 532, 2578
AvaI CYCGRG 1 cut(s) 3364
AvaII GGWCC 2 cut(s) 2632, 2929
AxyI CCTNAGG 1 cut(s) 3209
BaeI ACNNNNGTAYC 2 cut(s) 1443, 1476
BalI TGGCCA 3 cut(s) 785, 1259, 3674
BanI GGYRCC 3 cut(s) 460, 2327, 3266
BanII GRGCYC 1 cut(s) 1721
BarI GAAGNNNNNNTAC 2 cut(s) 1023, 1055
BauI CACGAG 4 cut(s) 409, 431, 1515, 1561
BbsI GAAGAC 2 cut(s) 2150, 2961
Bbv12I GWGCWC 1 cut(s) 2843
BceAI ACGGC 2 cut(s) 136, 1670
BcgI CGANNNNNNTGC 6 cut(s) 865, 899, 1557, 1591, 1664, 1698
BclI TGATCA 3 cut(s) 147, 2305, 3174
BcnI CCSGG 5 cut(s) 576, 1939, 2960, 3079, 3470
BcoDI GTCTC 8 cut(s) 304, 421, 1757, 2452, 2599, 2813, 3393, 3669
BcuI ACTAGT 2 cut(s) 2738, 3566
BfmI CTRYAG 5 cut(s) 900, 1509, 2424, 2583, 3444
BfoI RGCGCY 3 cut(s) 239, 867, 2030
BfuAI ACCTGC 1 cut(s) 1693
BmcAI AGTACT 2 cut(s) 950, 2240
Bme1390I CCNGG 5 cut(s) 576, 1939, 2960, 3079, 3470
Bme18I GGWCC 2 cut(s) 2632, 2929
BmeT110I CYCGRG 1 cut(s) 3364
BmgBI CACGTC 1 cut(s) 2519
BmgT120I GGNCC 5 cut(s) 2632, 2659, 2669, 2929, 3680
BmiI GGNNCC 5 cut(s) 181, 462, 2329, 3268, 3467
BmrFI CCNGG 5 cut(s) 576, 1939, 2960, 3079, 3470
BmtI GCTAGC 2 cut(s) 536, 2582
BpiI GAAGAC 2 cut(s) 2150, 2961
BplI GAGNNNNNCTC 6 cut(s) 1227, 1259, 2763, 2795, 3399, 3431
Bpu10I CCTNAGC 1 cut(s) 867
Bpu14I TTCGAA 2 cut(s) 997, 2289
BpuEI CTTGAG 5 cut(s) 180, 299, 1262, 2544, 3356
BpuMI CCSGG 5 cut(s) 576, 1939, 2960, 3079, 3470
Bsa29I ATCGAT 2 cut(s) 671, 1014
BsaAI YACGTR 3 cut(s) 1078, 2675, 3005
BsaBI GATNNNNATC 2 cut(s) 1640, 3068
BsaHI GRCGYC 1 cut(s) 3722
BsaI GGTCTC 2 cut(s) 1757, 3393
BsaJI CCNNGG 8 cut(s) 493, 859, 1155, 1377, 1875, 1938, 2716, 3403
BsaWI WCCGGW 2 cut(s) 302, 2011
BsaXI ACNNNNNCTCC 4 cut(s) 864, 894, 3553, 3583
Bsc4I CCNNNNNNNGG 3 cut(s) 1232, 3164, 3376
Bse118I RCCGGY 2 cut(s) 302, 2843
Bse1I ACTGG 2 cut(s) 612, 1308
Bse21I CCTNAGG 1 cut(s) 3209
Bse3DI GCAATG 3 cut(s) 1680, 2448, 3438
Bse8I GATNNNNATC 2 cut(s) 1640, 3068
BseAI TCCGGA 1 cut(s) 2011
BseCI ATCGAT 2 cut(s) 671, 1014
BseDI CCNNGG 8 cut(s) 493, 859, 1155, 1377, 1875, 1938, 2716, 3403
BseGI GGATG 8 cut(s) 1539, 1662, 2042, 2271, 2394, 2685, 2905, 3725
BseJI GATNNNNATC 2 cut(s) 1640, 3068
BseLI CCNNNNNNNGG 3 cut(s) 1232, 3164, 3376
BseMI GCAATG 3 cut(s) 1680, 2448, 3438
BseMII CTCAG 7 cut(s) 63, 708, 1445, 2427, 2617, 2642, 2801
BseNI ACTGG 2 cut(s) 612, 1308
BsePI GCGCGC 1 cut(s) 3501
BseRI GAGGAG 2 cut(s) 172, 3420
BseYI CCCAGC 1 cut(s) 1145
BsgI GTGCAG 3 cut(s) 109, 2082, 2416
Bsh1236I CGCG 2 cut(s) 812, 3503
Bsh1285I CGRYCG 1 cut(s) 3187
BshFI GGCC 9 cut(s) 785, 1102, 1259, 1812, 2660, 2670, 2715, 3674, 3682
BshNI GGYRCC 3 cut(s) 460, 2327, 3266
BshTI ACCGGT 1 cut(s) 302
BshVI ATCGAT 2 cut(s) 671, 1014
BsiEI CGRYCG 1 cut(s) 3187
BsiHKAI GWGCWC 1 cut(s) 2843
BsiHKCI CYCGRG 1 cut(s) 3364
BsiSI CCGG 8 cut(s) 303, 575, 1938, 2012, 2844, 2960, 3078, 3470
BslFI GGGAC 8 cut(s) 618, 989, 1314, 1638, 1961, 3114, 3438, 3667
BslI CCNNNNNNNGG 3 cut(s) 1232, 3164, 3376
BsmAI GTCTC 8 cut(s) 304, 421, 1757, 2452, 2599, 2813, 3393, 3669
BsmBI CGTCTC 2 cut(s) 421, 3669
BsmFI GGGAC 8 cut(s) 618, 989, 1314, 1638, 1961, 3114, 3438, 3667
BsmI GAATGC 2 cut(s) 232, 512
BsnI GGCC 9 cut(s) 785, 1102, 1259, 1812, 2660, 2670, 2715, 3674, 3682
Bso31I GGTCTC 2 cut(s) 1757, 3393
BsoBI CYCGRG 1 cut(s) 3364
Bsp119I TTCGAA 2 cut(s) 997, 2289
Bsp1286I GDGCHC 2 cut(s) 1721, 2843
Bsp13I TCCGGA 1 cut(s) 2011
Bsp19I CCATGG 3 cut(s) 859, 1377, 1875
Bsp68I TCGCGA 1 cut(s) 812
BspANI GGCC 9 cut(s) 785, 1102, 1259, 1812, 2660, 2670, 2715, 3674, 3682
BspCNI CTCAG 7 cut(s) 62, 709, 1444, 2426, 2616, 2641, 2800
BspDI ATCGAT 2 cut(s) 671, 1014
BspEI TCCGGA 1 cut(s) 2011
BspFNI CGCG 2 cut(s) 812, 3503
BspHI TCATGA 2 cut(s) 2826, 3752
BspLI GGNNCC 5 cut(s) 181, 462, 2329, 3268, 3467
BspMAI CTGCAG 1 cut(s) 2587
BspMI ACCTGC 1 cut(s) 1693
BspOI GCTAGC 2 cut(s) 536, 2582
BspPI GGATC 5 cut(s) 748, 1217, 2101, 2272, 3149
BspQI GCTCTTC 2 cut(s) 43, 1794
BspT104I TTCGAA 2 cut(s) 997, 2289
BspT107I GGYRCC 3 cut(s) 460, 2327, 3266
BspTNI GGTCTC 2 cut(s) 1757, 3393
BsrDI GCAATG 3 cut(s) 1680, 2448, 3438
BsrFI RCCGGY 2 cut(s) 302, 2843
BsrI ACTGG 2 cut(s) 612, 1308
BssAI RCCGGY 2 cut(s) 302, 2843
BssECI CCNNGG 8 cut(s) 493, 859, 1155, 1377, 1875, 1938, 2716, 3403
BssHII GCGCGC 1 cut(s) 3501
BssNI GRCGYC 1 cut(s) 3722
BssSI CACGAG 4 cut(s) 409, 431, 1515, 1561
BssT1I CCWWGG 5 cut(s) 493, 859, 1155, 1377, 1875
Bst2BI CACGAG 4 cut(s) 409, 431, 1515, 1561
Bst6I CTCTTC 4 cut(s) 43, 994, 1377, 1794
BstACI GRCGYC 1 cut(s) 3722
BstAPI GCANNNNNTGC 2 cut(s) 3026, 3347
BstBAI YACGTR 3 cut(s) 1078, 2675, 3005
BstBI TTCGAA 2 cut(s) 997, 2289
BstDSI CCRYGG 3 cut(s) 859, 1377, 1875
BstENI CCTNNNNNAGG 1 cut(s) 3374
BstF5I GGATG 8 cut(s) 1539, 1662, 2042, 2271, 2394, 2685, 2905, 3725
BstFNI CGCG 2 cut(s) 812, 3503
BstH2I RGCGCY 3 cut(s) 239, 867, 2030
BstMAI GTCTC 8 cut(s) 304, 421, 1757, 2452, 2599, 2813, 3393, 3669
BstMCI CGRYCG 1 cut(s) 3187
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 5 cut(s) 574, 1937, 2958, 3077, 3468
BstSFI CTRYAG 5 cut(s) 900, 1509, 2424, 2583, 3444
BstSNI TACGTA 1 cut(s) 3005
BstUI CGCG 2 cut(s) 812, 3503
BstV2I GAAGAC 2 cut(s) 2150, 2961
BstX2I RGATCY 1 cut(s) 2277
BstYI RGATCY 1 cut(s) 2277
Bsu15I ATCGAT 2 cut(s) 671, 1014
Bsu36I CCTNAGG 1 cut(s) 3209
BsuRI GGCC 9 cut(s) 785, 1102, 1259, 1812, 2660, 2670, 2715, 3674, 3682
BsuTUI ATCGAT 2 cut(s) 671, 1014
BtgI CCRYGG 3 cut(s) 859, 1377, 1875
BtgZI GCGATG 1 cut(s) 1627
BtrI CACGTC 1 cut(s) 2519
BtsCI GGATG 8 cut(s) 1539, 1662, 2042, 2271, 2394, 2685, 2905, 3725
BtsI GCAGTG 5 cut(s) 237, 354, 2487, 2613, 2928
BtuMI TCGCGA 1 cut(s) 812
BveI ACCTGC 1 cut(s) 1693
CaiI CAGNNNCTG 2 cut(s) 664, 974
CciI TCATGA 2 cut(s) 2826, 3752
Cfr10I RCCGGY 2 cut(s) 302, 2843
Cfr13I GGNCC 5 cut(s) 2632, 2659, 2669, 2929, 3680
ClaI ATCGAT 2 cut(s) 671, 1014
CseI GACGC 4 cut(s) 246, 403, 2870, 3730
Csp6I GTAC 9 cut(s) 244, 645, 856, 949, 2239, 2767, 3202, 3267, 3594
CspAI ACCGGT 1 cut(s) 302
CviQI GTAC 9 cut(s) 244, 645, 856, 949, 2239, 2767, 3202, 3267, 3594
DraI TTTAAA 1 cut(s) 1987
DrdI GACNNNNNNGTC 1 cut(s) 3661
DseDI GACNNNNNNGTC 1 cut(s) 3661
EaeI YGGCCR 3 cut(s) 783, 1257, 3672
Eam1104I CTCTTC 4 cut(s) 43, 994, 1377, 1794
EarI CTCTTC 4 cut(s) 43, 994, 1377, 1794
Eco105I TACGTA 1 cut(s) 3005
Eco130I CCWWGG 5 cut(s) 493, 859, 1155, 1377, 1875
Eco24I GRGCYC 1 cut(s) 1721
Eco31I GGTCTC 2 cut(s) 1757, 3393
Eco47I GGWCC 2 cut(s) 2632, 2929
Eco47III AGCGCT 1 cut(s) 2028
Eco57I CTGAAG 2 cut(s) 381, 2026
Eco81I CCTNAGG 1 cut(s) 3209
Eco88I CYCGRG 1 cut(s) 3364
EcoNI CCTNNNNNAGG 1 cut(s) 3374
EcoO109I RGGNCCY 1 cut(s) 3680
EcoRI GAATTC 3 cut(s) 1067, 1082, 3356
EcoT14I CCWWGG 5 cut(s) 493, 859, 1155, 1377, 1875
EcoT22I ATGCAT 2 cut(s) 691, 2083
EcoT38I GRGCYC 1 cut(s) 1721
ErhI CCWWGG 5 cut(s) 493, 859, 1155, 1377, 1875
Esp3I CGTCTC 2 cut(s) 421, 3669
FalI AAGNNNNNCTT 6 cut(s) 432, 464, 1590, 1622, 2860, 2892
FaqI GGGAC 8 cut(s) 618, 989, 1314, 1638, 1961, 3114, 3438, 3667
FauI CCCGC 1 cut(s) 3101
FauNDI CATATG 1 cut(s) 2077
FbaI TGATCA 3 cut(s) 147, 2305, 3174
FblI GTMKAC 3 cut(s) 3122, 3309, 3740
FokI GGATG 8 cut(s) 1526, 1649, 2049, 2278, 2401, 2672, 2912, 3712
FriOI GRGCYC 1 cut(s) 1721
FspI TGCGCA 1 cut(s) 1911
GsaI CCCAGC 1 cut(s) 1149
HaeII RGCGCY 3 cut(s) 239, 867, 2030
HaeIII GGCC 9 cut(s) 785, 1102, 1259, 1812, 2660, 2670, 2715, 3674, 3682
HapII CCGG 8 cut(s) 303, 575, 1938, 2012, 2844, 2960, 3078, 3470
HgaI GACGC 4 cut(s) 246, 403, 2870, 3730
Hin1I GRCGYC 1 cut(s) 3722
HincII GTYRAC 3 cut(s) 2200, 3123, 3310
HindII GTYRAC 3 cut(s) 2200, 3123, 3310
HindIII AAGCTT 1 cut(s) 1404
HpaI GTTAAC 1 cut(s) 2200
HpaII CCGG 8 cut(s) 303, 575, 1938, 2012, 2844, 2960, 3078, 3470
HphI GGTGA 7 cut(s) 317, 1003, 1207, 1318, 2393, 2848, 3002
Hpy166II GTNNAC 4 cut(s) 2200, 3123, 3310, 3741
Hpy8I GTNNAC 4 cut(s) 2200, 3123, 3310, 3741
Hpy99I CGWCG 9 cut(s) 122, 176, 1195, 1636, 1730, 1828, 2864, 3127, 3314
Hsp92I GRCGYC 1 cut(s) 3722
Kpn2I TCCGGA 1 cut(s) 2011
KpnI GGTACC 1 cut(s) 3270
Ksp22I TGATCA 3 cut(s) 147, 2305, 3174
KspAI GTTAAC 1 cut(s) 2200
LguI GCTCTTC 2 cut(s) 43, 1794
LmnI GCTCC 3 cut(s) 185, 498, 1585
MaeIII GTNAC 8 cut(s) 385, 1290, 2419, 2797, 2933, 2990, 3005, 3477
MflI RGATCY 1 cut(s) 2277
MhlI GDGCHC 2 cut(s) 1721, 2843
MlsI TGGCCA 3 cut(s) 785, 1259, 3674
MluCI AATT 6 cut(s) 1067, 1082, 1420, 2317, 3356, 3746
MluNI TGGCCA 3 cut(s) 785, 1259, 3674
MlyI GAGTC 7 cut(s) 589, 769, 1011, 1568, 2337, 3649, 3746
Mox20I TGGCCA 3 cut(s) 785, 1259, 3674
Mph1103I ATGCAT 2 cut(s) 691, 2083
MroI TCCGGA 1 cut(s) 2011
MroXI GAANNNNTTC 1 cut(s) 950
MscI TGGCCA 3 cut(s) 785, 1259, 3674
MseI TTAA 6 cut(s) 353, 620, 1133, 1986, 2199, 3137
MslI CAYNNNNRTG 3 cut(s) 66, 1712, 2471
Msp20I TGGCCA 3 cut(s) 785, 1259, 3674
MspA1I CMGCKG 4 cut(s) 974, 1145, 1619, 2417
MspI CCGG 8 cut(s) 303, 575, 1938, 2012, 2844, 2960, 3078, 3470
MspR9I CCNGG 5 cut(s) 576, 1939, 2960, 3079, 3470
Mva1269I GAATGC 2 cut(s) 232, 512
MvnI CGCG 2 cut(s) 812, 3503
NciI CCSGG 5 cut(s) 576, 1939, 2960, 3079, 3470
NcoI CCATGG 3 cut(s) 859, 1377, 1875
NdeI CATATG 1 cut(s) 2077
NheI GCTAGC 2 cut(s) 532, 2578
NlaIV GGNNCC 5 cut(s) 181, 462, 2329, 3268, 3467
NmeAIII GCCGAG 1 cut(s) 2697
NmuCI GTSAC 5 cut(s) 385, 1290, 2419, 2797, 2990
NruI TCGCGA 1 cut(s) 812
NsbI TGCGCA 1 cut(s) 1911
NsiI ATGCAT 2 cut(s) 691, 2083
NspI RCATGY 1 cut(s) 386
NspV TTCGAA 2 cut(s) 997, 2289
PaeR7I CTCGAG 1 cut(s) 3364
PagI TCATGA 2 cut(s) 2826, 3752
PauI GCGCGC 1 cut(s) 3501
PciSI GCTCTTC 2 cut(s) 43, 1794
PcsI WCGNNNNNNNCGW 1 cut(s) 3138
PctI GAATGC 2 cut(s) 232, 512
PdmI GAANNNNTTC 1 cut(s) 950
PfeI GAWTC 6 cut(s) 436, 571, 994, 1016, 1580, 3057
PflFI GACNNNGTC 1 cut(s) 664
PinAI ACCGGT 1 cut(s) 302
PleI GAGTC 7 cut(s) 589, 768, 1010, 1568, 2337, 3649, 3745
PpsI GAGTC 7 cut(s) 589, 768, 1010, 1568, 2337, 3649, 3745
Ppu21I YACGTR 3 cut(s) 1078, 2675, 3005
PshBI ATTAAT 1 cut(s) 3137
Psp1406I AACGTT 1 cut(s) 1050
PspFI CCCAGC 1 cut(s) 1145
PspN4I GGNNCC 5 cut(s) 181, 462, 2329, 3268, 3467
PspPI GGNCC 5 cut(s) 2632, 2659, 2669, 2929, 3680
PstI CTGCAG 1 cut(s) 2587
PstNI CAGNNNCTG 2 cut(s) 664, 974
PsuI RGATCY 1 cut(s) 2277
PsyI GACNNNGTC 1 cut(s) 664
PteI GCGCGC 1 cut(s) 3501
PvuII CAGCTG 2 cut(s) 1145, 2417
RruI TCGCGA 1 cut(s) 812
RsaI GTAC 9 cut(s) 245, 646, 857, 950, 2240, 2768, 3203, 3268, 3595
RsaNI GTAC 9 cut(s) 244, 645, 856, 949, 2239, 2767, 3202, 3267, 3594
RseI CAYNNNNRTG 3 cut(s) 66, 1712, 2471
SalI GTCGAC 2 cut(s) 3121, 3308
SapI GCTCTTC 2 cut(s) 43, 1794
SaqAI TTAA 6 cut(s) 353, 620, 1133, 1986, 2199, 3137
Sau96I GGNCC 5 cut(s) 2632, 2659, 2669, 2929, 3680
ScaI AGTACT 2 cut(s) 950, 2240
SchI GAGTC 7 cut(s) 589, 769, 1011, 1568, 2337, 3649, 3746
ScrFI CCNGG 5 cut(s) 576, 1939, 2960, 3079, 3470
SduI GDGCHC 2 cut(s) 1721, 2843
SfcI CTRYAG 5 cut(s) 900, 1509, 2424, 2583, 3444
Sfr274I CTCGAG 1 cut(s) 3364
SfuI TTCGAA 2 cut(s) 997, 2289
SinI GGWCC 2 cut(s) 2632, 2929
SlaI CTCGAG 1 cut(s) 3364
SmiMI CAYNNNNRTG 3 cut(s) 66, 1712, 2471
SmlI CTYRAG 6 cut(s) 195, 278, 1277, 2559, 3364, 3371
SmoI CTYRAG 6 cut(s) 195, 278, 1277, 2559, 3364, 3371
SnaBI TACGTA 1 cut(s) 3005
SpeI ACTAGT 2 cut(s) 2738, 3566
Sse9I AATT 6 cut(s) 1067, 1082, 1420, 2317, 3356, 3746
StyD4I CCNGG 5 cut(s) 574, 1937, 2958, 3077, 3468
StyI CCWWGG 5 cut(s) 493, 859, 1155, 1377, 1875
TaqII GACCGA 1 cut(s) 3417
TasI AATT 6 cut(s) 1067, 1082, 1420, 2317, 3356, 3746
TatI WGTACW 3 cut(s) 243, 948, 2238
TauI GCSGC 4 cut(s) 159, 180, 899, 974
TfiI GAWTC 6 cut(s) 436, 571, 994, 1016, 1580, 3057
Tru1I TTAA 6 cut(s) 353, 620, 1133, 1986, 2199, 3137
Tru9I TTAA 6 cut(s) 353, 620, 1133, 1986, 2199, 3137
TseFI GTSAC 5 cut(s) 385, 1290, 2419, 2797, 2990
Tsp45I GTSAC 5 cut(s) 385, 1290, 2419, 2797, 2990
TspGWI ACGGA 3 cut(s) 607, 1975, 2784
Tth111I GACNNNGTC 1 cut(s) 664
VpaK11BI GGWCC 2 cut(s) 2632, 2929
VspI ATTAAT 1 cut(s) 3137
XagI CCTNNNNNAGG 1 cut(s) 3374
XapI RAATTY 4 cut(s) 1067, 1082, 2317, 3356
XbaI TCTAGA 2 cut(s) 1549, 2339
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 2 cut(s) 1567, 1745
XhoI CTCGAG 1 cut(s) 3364
XmiI GTMKAC 3 cut(s) 3122, 3309, 3740
XmnI GAANNNNTTC 1 cut(s) 950
ZrmI AGTACT 2 cut(s) 950, 2240
Zsp2I ATGCAT 2 cut(s) 691, 2083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.