MD02G1065200.v1.1

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
5278558 .. 5285071
6514 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1065200.v1.1.491

Sequence Viewer

Length: 3753 bp
ATGAGTAAAATGAACTCTCCTGAGAAGAATGATGAGAATATGGTAGCTGAGAAAGGAGATGAGAGCAGCAAAGGAGGAAATTCAGTATTGAAAATATTCAGATATGCTGATTGGGTTGATGTGGTGCTGATGGTGCTGGGTACAGTGGGAGCAATAGGAGATGGGATGTCTACTAATTGCTTGCTGGTGTTCGTTAGCCGTCTTATGAACAACTTGGGATATGGTCAGACCCAGCAGAACAATCATGGGACTAATTGGATGGACGAAGTTGAAAGGTGCAGCTTGGACTTTGTATACTTGGGATTAGCAGTAATGCTGGTGGCTCATTTGGAGGGTTATTGTTGGAGCAAAACCAGTGAGAGGCAGGTGCTGAAGATTCGTTACAAGTACTTGGAAGCTGTTCTAAGGCAGGAAGTTGGGTTTTTCGATTCACAAGAAGCCACTACGTCGGAGGTCATCAATACTATATCAAAAGACACTTTTCTCATACAAGAAGTTCTAAGTGAAAAGGTGCCAACATTCGTTATGCACTCCTCCGTTTTTGTTTCTGGCCTGGCCTTCTCCACCTACTTGTCATGGAGACTGGCCTTGGTAGCATTCCCCACACTACTTCTTCTAATCATACCAGGAATGATCTATGGGAAGTACCTCATGTACTTATCTAAAAACTCGTACAAAGAGTACGGAGAAGCAAACATAATAATAGGGCAAGCATTGAGCTCCATTAAAACTGTTTATTCGTTCACTGCCGAGAGGAGAATTGTGGACAGATATTCAGCAATACTGGAGAGGACAAGCAGGCTGGGGATAAAGCAAGGCATTGCAAAAGGGTTGGCTGTTGGAAGCACAGGACTTTCTTTTGCGATATGGGGATTTCTTGCTTGGTATGGGAGCCATTTGGTCATGTTTAAAGGTGAAAGTGGTGGGAGGATTTATGCGGCGGGCATCTCTTTCGTATTGAGTGGACTATCCTTGGGAATGGCACTTCCAGATTTGAGGTACTTCACAGAAGCTGCTGTTGCCGCCACCCGAATATTTGACAGGATTGACCGGAAACCCTTGATTGGTGGTGAAGACACCAAAGGAGTTGTGCTAGACAACATTAGAGGCGAGCTAGAATTCATTGATGTCAAGTTCACATATCCTTCTCGTCCTGATTCCATGGTTCTCAAAGATTTCAACCTCAAAGTTGAAGCCGGGAAGACCATTGCTCTTGTAGGTGCAAGTGGAAGTGGAAAATCCACAGCAATTGCGTTGCTGCAACGCTTTTATGACGCGGATGATGGCGTTGTTCGGGTTGATGGCATTGATATAAGGACGCTTCAGTTGAATTGGATAAGATCCAAGATGGGACTTGTGAGCCAAGAACATGCATTGTTTGGGACATCGATAAGGGAAAATATTATGTTTGGTAAGCTTGATGCTAATATGGATGAAGTCACAGCTGCAGCTATGGCTGCCAATGCTCATAATTTCATAAGGCAACTGCCAGAAGGGTATGAGACCAAGATTGGAGAGAGAGGAGCACTTTTATCTGGTGGACAAAAGCAGCGGATAGCCATTGCTAGAGCAATCATTAAGAACCCTGTGATTCTACTACTTGATGAAGCAACAAGTGCTCTTGACTCTGAATCAGAGGCTTTGGTCCAAAATGCTCTTGATCAAGCCTCCATGGGAAGAACCACAATGGTTGTTGCACACAAGCTTTCCACAGTCCGAAATGCAGACCTAATTGCAGCGGTGAGTGGCGGTTGCATCAACGAAATAGGGTCCCACAACGACCTCATCAACCGCCAAAACGGGCACTATGCAAATCTAGCAAAGCTGCAGAGGCAGCTCAGTAGTTTTGACAACGTTGAGCAAGAACGAATTTCGGTGTCTTCAGTCACTAGAAGCAGCGCTGGCAGGCTAAGCACGGCAAGATCAAGCCCTGCATCAGCGTTTGCAAAATCGCCATTATCTAATGAGACTCCACAACTTGTGTCACATCCTCCGACTTCTTTTTACCGGCTTCTCTCTTTAAATTCCCCAGAATGGAAGCAAGGCCTAATCGGAAGCCTCTCTGCCATAGCGTTCGGGTCAGTTCAACCTGTCTATGCCTTAACCATAGGTGGAATGATATCAGCTTTCTTTCTGCCAAACCACGACGAAATGTGTGCTCGAATTCGCACATACTCCTTGACTTTCTGTGCACTTTCCTTAATTTCCATGACTTTGAATCTCTTCCAACACTACAATTTTGCTTACATGGGTGAGCAGCTCACGAAAAGAATCCGATTACAAATGCTTCAAAAGATCTTGACCTTTGAAACGGCTTGGTTTGATGAGGAGCAGAACTCGAGTGGGGCATTGTGTTCGAGATTGAGCAATGAGGCTTCCATGGTTAAGTCCCTCGTGGCAGACAGGGTGTCCTTATTAGTCCAAACCACTTCAGCTGTCACAATAGCCATGATCATGGGGCTAGTCGTGGCATGGAAGCTAGCACTCGTTATGATCGCGGTCCAACCACTCACGATCCTTTGCTTTTACACTAAGAAAGTCCTGCTCTCTAGCATATCAGCCAACTTCATCAAAGCACAAAACCACAGCACTCAAATTGCAGTCGAATCAGTGTATAACCACAGAATTGTGACATCATACGGAAGCGTGGGAAAAGTACTTCAACTGTTCGATGAGGCTCAGGAGGCACCGCGGAAAGAAGCACGGAAGAAGGCATGGCTAGCTGGGCTTGGAATGGGATCGGCTCAGTGCCTAACATTTATGTCATGGGCATTGGACTTCTGGTATGGTGGTACATTGGTAGAAAAAGGGCAAATATCAGCTGGGGATGTGTTCAAAACATTTTTCATATTGGTTAGCACTGGTAAAGTTATAGCTGAAGCTGGAAGCATGACTTCGGATTTGGCCAAGGGTTCGACTGCAGTTGCATCCGTGTTTGAGATTCTTGACCGGCATTCACTAATTTCGGGCTCTCATAATGTTGGGGATGGAGATAGCAATAATGGAAACTGGATCCAGTTAGAGAAAGTGACTGGAAGGATTGAATTGAAGAAGGTTGATTTTGCATACCCTAGCAGGCCAGAGACATTAGTGCTGTGCCAATTTAGCTTGGAGGCTCAAGCAGGCTCAAGCTTTGGACTTGTCGGGACAAGTGGGTGTGGAAAATCAACTGTGATTGGCTTGATACAAAGATTTTATGATGTAGGGAGGGGATCAGTGAAGGTGGATGGGGTTGACATAAGGGAACTAGATATTCAATGGTACCGGAGGCACACGGCCCTTGTTAGCCAAGAGCCGGTGATATATTCCGGTACCATTCGGGACAACATCATGTTCGGGAAGCTTGACACTCCAGAAAATGAGGTTGCAGAGGCTGCGAGGGCCGCCAATGCTCACGAATTTATCTCGTCACTGAAAGACGGGTACGTCACTGAGTGCGGCGAAAGAGGGGTGCAGCTATCAGGAGGGCAAAAGCAAAGGATAGCAATTGCAAGAGCAATACTTAGGAATCCAACAATATTGTTGCTAGATGAGGCAACAAGTGCACTTGATCTGCAATCAGAGCAGCTTGTGCAGGAAGCATTGGATCGCATTATGGTTGGAAGGACAACAATTGTGGTAGCACACAGGCTCAACACCATCAAAAACCTAGATATGATTGCAGTTGTTGGAGATGGGAAGGTGGTGGAAAAAGGCACTTATGCTCAGCTCCAGCAAAAGCGTGGTGCCTTTTTTAACCTTGCCACGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

1251

Amino Acids

136.81

Weight (kDa)

8.03

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 55 - 305 3.3e-41 ABC transporter transmembrane region
ABC_tran PF00005 390 - 539 8.6e-31 ABC transporter
ABC_membrane PF00664 686 - 953 2e-47 ABC transporter transmembrane region
ABC_tran PF00005 1034 - 1181 7e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
AasI GACNNNNNNGTC 1 cut(s) 3425
Acc36I ACCTGC 1 cut(s) 355
Acc65I GGTACC 2 cut(s) 3261, 3311
AccB1I GGYRCC 5 cut(s) 511, 2686, 3261, 3311, 3725
AccI GTMKAC 2 cut(s) 170, 294
AccII CGCG 3 cut(s) 1277, 2498, 2692
AclI AACGTT 1 cut(s) 1854
AclWI GGATC 7 cut(s) 1335, 2509, 2746, 3007, 3020, 3220, 3594
AcoI YGGCCR 1 cut(s) 2904
AcsI RAATTY 6 cut(s) 79, 1118, 1869, 2023, 2163, 3398
AcuI CTGAAG 5 cut(s) 392, 1307, 1866, 2415, 2898
AcvI CACGTG 1 cut(s) 3747
AdeI CACNNNGTG 1 cut(s) 3435
AfeI AGCGCT 1 cut(s) 1900
AfiI CCNNNNNNNGG 4 cut(s) 360, 1064, 2034, 3295
AflIII ACRYGT 1 cut(s) 3746
AhdI GACNNNNNGTC 1 cut(s) 2407
AjnI CCWGG 2 cut(s) 552, 625
Alw21I GWGCWC 6 cut(s) 722, 1528, 1621, 2161, 2194, 3547
Alw26I GTCTC 4 cut(s) 574, 1496, 1961, 3077
Alw44I GTGCAC 2 cut(s) 2190, 3543
AlwI GGATC 7 cut(s) 1335, 2509, 2746, 3007, 3020, 3220, 3594
AlwNI CAGNNNCTG 3 cut(s) 370, 1013, 3374
Ama87I CYCGRG 1 cut(s) 2338
Aor51HI AGCGCT 1 cut(s) 1900
AoxI GGCC 8 cut(s) 550, 555, 585, 2044, 2904, 3077, 3276, 3381
ApaLI GTGCAC 2 cut(s) 2190, 3543
ApoI RAATTY 6 cut(s) 79, 1118, 1869, 2023, 2163, 3398
ArsI GACNNNNNNTTYG 2 cut(s) 2884, 2916
Asp700I GAANNNNTTC 3 cut(s) 95, 399, 2222
Asp718I GGTACC 2 cut(s) 3261, 3311
AspLEI GCGC 1 cut(s) 1901
AspS9I GGNCC 5 cut(s) 1645, 1770, 2500, 3277, 3381
AsuC2I CCSGG 1 cut(s) 1198
AsuHPI GGTGA 5 cut(s) 926, 1082, 1753, 2264, 3310
AsuNHI GCTAGC 2 cut(s) 2479, 2719
AvaI CYCGRG 1 cut(s) 2338
AvaII GGWCC 3 cut(s) 1645, 1770, 2500
BaeGI GKGCMC 3 cut(s) 1806, 2194, 3547
BaeI ACNNNNGTAYC 2 cut(s) 2784, 2817
BalI TGGCCA 1 cut(s) 2906
BamHI GGATCC 1 cut(s) 3012
BanI GGYRCC 5 cut(s) 511, 2686, 3261, 3311, 3725
BanII GRGCYC 2 cut(s) 722, 2972
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BauI CACGAG 1 cut(s) 2393
BbrPI CACGTG 1 cut(s) 3747
BbsI GAAGAC 3 cut(s) 1080, 1208, 1872
Bbv12I GWGCWC 6 cut(s) 722, 1528, 1621, 2161, 2194, 3547
BceAI ACGGC 4 cut(s) 183, 1932, 2328, 3291
BcgI CGANNNNNNTGC 6 cut(s) 934, 968, 2138, 2172, 2337, 2371
BciT130I CCWGG 2 cut(s) 554, 627
BclI TGATCA 2 cut(s) 1660, 2451
BcnI CCSGG 1 cut(s) 1198
BcoDI GTCTC 4 cut(s) 574, 1496, 1961, 3077
BfmI CTRYAG 3 cut(s) 1446, 1826, 2919
BfoI RGCGCY 1 cut(s) 1902
BfuAI ACCTGC 1 cut(s) 355
BglII AGATCT 1 cut(s) 2295
BlpI GCTNAGC 2 cut(s) 1910, 3705
BmcAI AGTACT 2 cut(s) 389, 2658
Bme1390I CCNGG 3 cut(s) 554, 627, 1198
Bme18I GGWCC 3 cut(s) 1645, 1770, 2500
BmeRI GACNNNNNGTC 1 cut(s) 2407
BmeT110I CYCGRG 1 cut(s) 2338
BmgT120I GGNCC 5 cut(s) 1645, 1770, 2500, 3277, 3381
BmiI GGNNCC 9 cut(s) 513, 893, 1771, 1772, 2688, 3014, 3263, 3313, 3727
BmrFI CCNGG 3 cut(s) 554, 627, 1198
BmsI GCATC 5 cut(s) 954, 1411, 1764, 1943, 2936
BmtI GCTAGC 2 cut(s) 2483, 2723
BpiI GAAGAC 3 cut(s) 1080, 1208, 1872
BplI GAGNNNNNCTC 2 cut(s) 2321, 2353
BpmI CTGGAG 3 cut(s) 806, 3336, 3695
Bpu10I CCTNAGC 1 cut(s) 2679
Bpu1102I GCTNAGC 2 cut(s) 1910, 3705
BpuEI CTTGAG 2 cut(s) 3102, 3112
BpuMI CCSGG 1 cut(s) 1198
Bsa29I ATCGAT 1 cut(s) 1388
BsaAI YACGTR 1 cut(s) 3747
BsaI GGTCTC 1 cut(s) 1496
BsaJI CCNNGG 7 cut(s) 588, 972, 1161, 1671, 2379, 2690, 2907
BsaWI WCCGGW 3 cut(s) 1050, 3264, 3308
Bsc4I CCNNNNNNNGG 4 cut(s) 360, 1064, 2034, 3295
Bse118I RCCGGY 3 cut(s) 2007, 2949, 3295
Bse1I ACTGG 7 cut(s) 354, 588, 789, 2866, 3014, 3016, 3037
Bse3DI GCAATG 4 cut(s) 819, 1206, 1560, 2374
BseBI CCWGG 2 cut(s) 554, 627
BseCI ATCGAT 1 cut(s) 1388
BseDI CCNNGG 7 cut(s) 588, 972, 1161, 1671, 2379, 2690, 2907
BseGI GGATG 9 cut(s) 171, 264, 1285, 1438, 1987, 2833, 2927, 2992, 3232
BseLI CCNNNNNNNGG 4 cut(s) 360, 1064, 2034, 3295
BseMI GCAATG 4 cut(s) 819, 1206, 1560, 2374
BseMII CTCAG 7 cut(s) 12, 39, 1852, 2693, 2759, 3423, 3719
BseNI ACTGG 7 cut(s) 354, 588, 789, 2866, 3014, 3016, 3037
BseRI GAGGAG 4 cut(s) 523, 769, 1536, 2342
BseSI GKGCMC 3 cut(s) 1806, 2194, 3547
BseYI CCCAGC 5 cut(s) 136, 231, 802, 2723, 2822
BsgI GTGCAG 3 cut(s) 298, 3473, 3593
Bsh1236I CGCG 3 cut(s) 1277, 2498, 2692
BshFI GGCC 8 cut(s) 552, 557, 587, 2046, 2906, 3079, 3278, 3383
BshNI GGYRCC 5 cut(s) 511, 2686, 3261, 3311, 3725
BshVI ATCGAT 1 cut(s) 1388
BsiHKAI GWGCWC 6 cut(s) 722, 1528, 1621, 2161, 2194, 3547
BsiHKCI CYCGRG 1 cut(s) 2338
BsiSI CCGG 7 cut(s) 1051, 1197, 2008, 2950, 3265, 3296, 3309
BslFI GGGAC 7 cut(s) 262, 1365, 1396, 1756, 2374, 3160, 3335
BslI CCNNNNNNNGG 4 cut(s) 360, 1064, 2034, 3295
BsmAI GTCTC 4 cut(s) 574, 1496, 1961, 3077
BsmFI GGGAC 7 cut(s) 262, 1365, 1396, 1756, 2374, 3160, 3335
BsmI GAATGC 2 cut(s) 596, 2953
BsnI GGCC 8 cut(s) 552, 557, 587, 2046, 2906, 3079, 3278, 3383
Bso31I GGTCTC 1 cut(s) 1496
BsoBI CYCGRG 1 cut(s) 2338
Bsp1286I GDGCHC 8 cut(s) 722, 1528, 1621, 1806, 2161, 2194, 2972, 3547
Bsp1720I GCTNAGC 2 cut(s) 1910, 3705
Bsp19I CCATGG 3 cut(s) 1161, 1671, 2379
BspANI GGCC 8 cut(s) 552, 557, 587, 2046, 2906, 3079, 3278, 3383
BspCNI CTCAG 7 cut(s) 13, 40, 1851, 2692, 2758, 3424, 3718
BspDI ATCGAT 1 cut(s) 1388
BspFNI CGCG 3 cut(s) 1277, 2498, 2692
BspLI GGNNCC 9 cut(s) 513, 893, 1771, 1772, 2688, 3014, 3263, 3313, 3727
BspMAI CTGCAG 3 cut(s) 1450, 1830, 2923
BspMI ACCTGC 1 cut(s) 355
BspOI GCTAGC 2 cut(s) 2483, 2723
BspPI GGATC 7 cut(s) 1335, 2509, 2746, 3007, 3020, 3220, 3594
BspT107I GGYRCC 5 cut(s) 511, 2686, 3261, 3311, 3725
BspTNI GGTCTC 1 cut(s) 1496
BsrDI GCAATG 4 cut(s) 819, 1206, 1560, 2374
BsrFI RCCGGY 3 cut(s) 2007, 2949, 3295
BsrI ACTGG 7 cut(s) 354, 588, 789, 2866, 3014, 3016, 3037
BssAI RCCGGY 3 cut(s) 2007, 2949, 3295
BssECI CCNNGG 7 cut(s) 588, 972, 1161, 1671, 2379, 2690, 2907
BssNAI GTATAC 1 cut(s) 295
BssSI CACGAG 1 cut(s) 2393
BssT1I CCWWGG 6 cut(s) 588, 972, 1161, 1671, 2379, 2907
Bst1107I GTATAC 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 2393
Bst2UI CCWGG 2 cut(s) 554, 627
Bst4CI ACNGT 5 cut(s) 145, 733, 1714, 2667, 3172
Bst6I CTCTTC 1 cut(s) 2228
BstAPI GCANNNNNTGC 4 cut(s) 1616, 3374, 3542, 3571
BstBAI YACGTR 1 cut(s) 3747
BstDSI CCRYGG 4 cut(s) 1161, 1671, 2379, 2690
BstF5I GGATG 9 cut(s) 171, 264, 1285, 1438, 1987, 2833, 2927, 2992, 3232
BstFNI CGCG 3 cut(s) 1277, 2498, 2692
BstH2I RGCGCY 1 cut(s) 1902
BstHHI GCGC 1 cut(s) 1901
BstMAI GTCTC 4 cut(s) 574, 1496, 1961, 3077
BstNI CCWGG 2 cut(s) 554, 627
BstNSI RCATGY 1 cut(s) 1373
BstSCI CCNGG 3 cut(s) 552, 625, 1196
BstSFI CTRYAG 3 cut(s) 1446, 1826, 2919
BstSLI GKGCMC 3 cut(s) 1806, 2194, 3547
BstUI CGCG 3 cut(s) 1277, 2498, 2692
BstV2I GAAGAC 3 cut(s) 1080, 1208, 1872
BstX2I RGATCY 3 cut(s) 1340, 2295, 3012
BstXI CCANNNNNNTGG 1 cut(s) 2455
BstYI RGATCY 3 cut(s) 1340, 2295, 3012
BstZ17I GTATAC 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 1388
BsuRI GGCC 8 cut(s) 552, 557, 587, 2046, 2906, 3079, 3278, 3383
BsuTUI ATCGAT 1 cut(s) 1388
BtgI CCRYGG 4 cut(s) 1161, 1671, 2379, 2690
BtsCI GGATG 9 cut(s) 171, 264, 1285, 1438, 1987, 2833, 2927, 2992, 3232
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 9 cut(s) 150, 361, 744, 2616, 2753, 2859, 3222, 3410, 3429
BveI ACCTGC 1 cut(s) 355
CaiI CAGNNNCTG 3 cut(s) 370, 1013, 3374
CfoI GCGC 1 cut(s) 1901
Cfr10I RCCGGY 3 cut(s) 2007, 2949, 3295
Cfr13I GGNCC 5 cut(s) 1645, 1770, 2500, 3277, 3381
Cfr42I CCGCGG 1 cut(s) 2693
ClaI ATCGAT 1 cut(s) 1388
CseI GACGC 2 cut(s) 1283, 1327
CspCI CAANNNNNGTGG 6 cut(s) 1231, 1266, 1672, 1707, 3597, 3632
DraI TTTAAA 2 cut(s) 910, 2022
DraIII CACNNNGTG 1 cut(s) 3435
DrdI GACNNNNNNGTC 1 cut(s) 3425
DriI GACNNNNNGTC 1 cut(s) 2407
DseDI GACNNNNNNGTC 1 cut(s) 3425
EaeI YGGCCR 1 cut(s) 2904
Eam1104I CTCTTC 1 cut(s) 2228
Eam1105I GACNNNNNGTC 1 cut(s) 2407
EarI CTCTTC 1 cut(s) 2228
Ecl136II GAGCTC 1 cut(s) 720
Eco130I CCWWGG 6 cut(s) 588, 972, 1161, 1671, 2379, 2907
Eco147I AGGCCT 1 cut(s) 2046
Eco24I GRGCYC 2 cut(s) 722, 2972
Eco31I GGTCTC 1 cut(s) 1496
Eco32I GATATC 1 cut(s) 2121
Eco47I GGWCC 3 cut(s) 1645, 1770, 2500
Eco47III AGCGCT 1 cut(s) 1900
Eco53kI GAGCTC 1 cut(s) 720
Eco57I CTGAAG 5 cut(s) 392, 1307, 1866, 2415, 2898
Eco72I CACGTG 1 cut(s) 3747
Eco88I CYCGRG 1 cut(s) 2338
EcoICRI GAGCTC 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 1770
EcoRI GAATTC 2 cut(s) 1118, 2163
EcoRII CCWGG 2 cut(s) 552, 625
EcoRV GATATC 1 cut(s) 2121
EcoT14I CCWWGG 6 cut(s) 588, 972, 1161, 1671, 2379, 2907
EcoT22I ATGCAT 1 cut(s) 1375
EcoT38I GRGCYC 2 cut(s) 722, 2972
ErhI CCWWGG 6 cut(s) 588, 972, 1161, 1671, 2379, 2907
FalI AAGNNNNNCTT 2 cut(s) 2878, 2910
FaqI GGGAC 7 cut(s) 262, 1365, 1396, 1756, 2374, 3160, 3335
FauI CCCGC 1 cut(s) 934
FbaI TGATCA 2 cut(s) 1660, 2451
FblI GTMKAC 2 cut(s) 170, 294
FokI GGATG 9 cut(s) 178, 271, 1292, 1445, 1974, 2840, 2914, 2999, 3239
FriOI GRGCYC 2 cut(s) 722, 2972
GlaI GCGC 1 cut(s) 1900
GsaI CCCAGC 5 cut(s) 140, 235, 806, 2727, 2826
GsuI CTGGAG 3 cut(s) 806, 3336, 3695
HaeII RGCGCY 1 cut(s) 1902
HaeIII GGCC 8 cut(s) 552, 557, 587, 2046, 2906, 3079, 3278, 3383
HapII CCGG 7 cut(s) 1051, 1197, 2008, 2950, 3265, 3296, 3309
HgaI GACGC 2 cut(s) 1283, 1327
HhaI GCGC 1 cut(s) 1901
Hin6I GCGC 1 cut(s) 1899
HinP1I GCGC 1 cut(s) 1899
HincII GTYRAC 1 cut(s) 3235
HindII GTYRAC 1 cut(s) 3235
HindIII AAGCTT 4 cut(s) 1415, 1703, 3130, 3341
HpaII CCGG 7 cut(s) 1051, 1197, 2008, 2950, 3265, 3296, 3309
HphI GGTGA 5 cut(s) 926, 1082, 1753, 2264, 3310
Hpy99I CGWCG 2 cut(s) 451, 2150
HpyAV CCTTC 9 cut(s) 568, 1155, 1487, 2704, 3030, 3046, 3214, 3597, 3673
HpyCH4III ACNGT 5 cut(s) 145, 733, 1714, 2667, 3172
HpyCH4IV ACGT 4 cut(s) 446, 1854, 3426, 3746
HpySE526I ACGT 4 cut(s) 446, 1854, 3426, 3746
HspAI GCGC 1 cut(s) 1899
KflI GGGWCCC 1 cut(s) 1770
KpnI GGTACC 2 cut(s) 3265, 3315
Ksp22I TGATCA 2 cut(s) 1660, 2451
KspI CCGCGG 1 cut(s) 2693
LmnI GCTCC 7 cut(s) 149, 345, 725, 891, 1523, 2329, 3714
LweI GCATC 5 cut(s) 954, 1411, 1764, 1943, 2936
MaeII ACGT 4 cut(s) 446, 1854, 3426, 3746
MaeIII GTNAC 9 cut(s) 380, 1438, 1885, 1983, 2437, 2629, 3028, 3408, 3427
MfeI CAATTG 3 cut(s) 1248, 3486, 3612
MflI RGATCY 3 cut(s) 1340, 2295, 3012
MhlI GDGCHC 8 cut(s) 722, 1528, 1621, 1806, 2161, 2194, 2972, 3547
MlsI TGGCCA 1 cut(s) 2906
MluNI TGGCCA 1 cut(s) 2906
MlyI GAGTC 2 cut(s) 1619, 1963
MmeI TCCRAC 9 cut(s) 323, 429, 820, 2018, 2251, 2527, 3536, 3580, 3649
Mox20I TGGCCA 1 cut(s) 2906
Mph1103I ATGCAT 1 cut(s) 1375
MroXI GAANNNNTTC 3 cut(s) 95, 399, 2222
MscI TGGCCA 1 cut(s) 2906
MseI TTAA 8 cut(s) 726, 909, 1578, 2021, 2102, 2201, 2385, 3735
MslI CAYNNNNRTG 1 cut(s) 2453
Msp20I TGGCCA 1 cut(s) 2906
MspA1I CMGCKG 6 cut(s) 1445, 1552, 1739, 2435, 2692, 2822
MspI CCGG 7 cut(s) 1051, 1197, 2008, 2950, 3265, 3296, 3309
MspR9I CCNGG 3 cut(s) 554, 627, 1198
MunI CAATTG 3 cut(s) 1248, 3486, 3612
Mva1269I GAATGC 2 cut(s) 596, 2953
MvaI CCWGG 2 cut(s) 554, 627
MvnI CGCG 3 cut(s) 1277, 2498, 2692
NciI CCSGG 1 cut(s) 1198
NcoI CCATGG 3 cut(s) 1161, 1671, 2379
NheI GCTAGC 2 cut(s) 2479, 2719
NlaIV GGNNCC 9 cut(s) 513, 893, 1771, 1772, 2688, 3014, 3263, 3313, 3727
NmeAIII GCCGAG 1 cut(s) 775
NmuCI GTSAC 8 cut(s) 1438, 1885, 1983, 2437, 2629, 3028, 3408, 3427
NsiI ATGCAT 1 cut(s) 1375
NspI RCATGY 1 cut(s) 1373
PaeR7I CTCGAG 1 cut(s) 2338
PaqCI CACCTGC 1 cut(s) 355
PceI AGGCCT 1 cut(s) 2046
PctI GAATGC 2 cut(s) 596, 2953
PdmI GAANNNNTTC 3 cut(s) 95, 399, 2222
PleI GAGTC 2 cut(s) 1619, 1963
PmaCI CACGTG 1 cut(s) 3747
PmlI CACGTG 1 cut(s) 3747
PpsI GAGTC 2 cut(s) 1619, 1963
Ppu21I YACGTR 1 cut(s) 3747
PpuMI RGGWCCY 1 cut(s) 1770
Psp124BI GAGCTC 1 cut(s) 722
Psp1406I AACGTT 1 cut(s) 1854
Psp5II RGGWCCY 1 cut(s) 1770
Psp6I CCWGG 2 cut(s) 552, 625
PspCI CACGTG 1 cut(s) 3747
PspFI CCCAGC 5 cut(s) 136, 231, 802, 2723, 2822
PspGI CCWGG 2 cut(s) 552, 625
PspN4I GGNNCC 9 cut(s) 513, 893, 1771, 1772, 2688, 3014, 3263, 3313, 3727
PspPI GGNCC 5 cut(s) 1645, 1770, 2500, 3277, 3381
PspPPI RGGWCCY 1 cut(s) 1770
PspXI VCTCGAGB 1 cut(s) 2338
PstI CTGCAG 3 cut(s) 1450, 1830, 2923
PstNI CAGNNNCTG 3 cut(s) 370, 1013, 3374
PsuI RGATCY 3 cut(s) 1340, 2295, 3012
PvuII CAGCTG 3 cut(s) 1445, 2435, 2822
RseI CAYNNNNRTG 1 cut(s) 2453
SacI GAGCTC 1 cut(s) 722
SacII CCGCGG 1 cut(s) 2693
SaqAI TTAA 8 cut(s) 726, 909, 1578, 2021, 2102, 2201, 2385, 3735
Sau96I GGNCC 5 cut(s) 1645, 1770, 2500, 3277, 3381
ScaI AGTACT 2 cut(s) 389, 2658
SchI GAGTC 2 cut(s) 1619, 1963
ScrFI CCNGG 3 cut(s) 554, 627, 1198
SduI GDGCHC 8 cut(s) 722, 1528, 1621, 1806, 2161, 2194, 2972, 3547
SfaNI GCATC 5 cut(s) 954, 1411, 1764, 1943, 2936
SfcI CTRYAG 3 cut(s) 1446, 1826, 2919
Sfr274I CTCGAG 1 cut(s) 2338
Sfr303I CCGCGG 1 cut(s) 2693
SgrBI CCGCGG 1 cut(s) 2693
SinI GGWCC 3 cut(s) 1645, 1770, 2500
SlaI CTCGAG 1 cut(s) 2338
SmiMI CAYNNNNRTG 1 cut(s) 2453
SmlI CTYRAG 3 cut(s) 2338, 3117, 3127
SmoI CTYRAG 3 cut(s) 2338, 3117, 3127
SseBI AGGCCT 1 cut(s) 2046
SspI AATATT 4 cut(s) 96, 1035, 1402, 3519
SstI GAGCTC 1 cut(s) 722
StuI AGGCCT 1 cut(s) 2046
StyD4I CCNGG 3 cut(s) 552, 625, 1196
StyI CCWWGG 6 cut(s) 588, 972, 1161, 1671, 2379, 2907
TaaI ACNGT 5 cut(s) 145, 733, 1714, 2667, 3172
TaiI ACGT 4 cut(s) 449, 1857, 3429, 3749
TaqI TCGA 8 cut(s) 426, 1388, 2161, 2339, 2357, 2604, 2670, 2915
TatI WGTACW 3 cut(s) 387, 654, 2656
TauI GCSGC 4 cut(s) 941, 1025, 3386, 3441
Tru1I TTAA 8 cut(s) 726, 909, 1578, 2021, 2102, 2201, 2385, 3735
Tru9I TTAA 8 cut(s) 726, 909, 1578, 2021, 2102, 2201, 2385, 3735
TscAI CASTG 9 cut(s) 150, 361, 751, 2616, 2753, 2866, 3222, 3417, 3436
TseFI GTSAC 8 cut(s) 1438, 1885, 1983, 2437, 2629, 3028, 3408, 3427
Tsp45I GTSAC 8 cut(s) 1438, 1885, 1983, 2437, 2629, 3028, 3408, 3427
TspDTI ATGAA 8 cut(s) 26, 221, 1111, 1449, 1465, 1620, 2557, 2836
TspGWI ACGGA 5 cut(s) 526, 699, 2655, 2719, 2920
TspRI CASTG 9 cut(s) 150, 361, 751, 2616, 2753, 2866, 3222, 3417, 3436
VneI GTGCAC 2 cut(s) 2190, 3543
VpaK11BI GGWCC 3 cut(s) 1645, 1770, 2500
XapI RAATTY 6 cut(s) 79, 1118, 1869, 2023, 2163, 3398
XceI RCATGY 1 cut(s) 1373
XcmI CCANNNNNNNNNTGG 1 cut(s) 3719
XhoI CTCGAG 1 cut(s) 2338
XmiI GTMKAC 2 cut(s) 170, 294
XmnI GAANNNNTTC 3 cut(s) 95, 399, 2222
ZrmI AGTACT 2 cut(s) 389, 2658
Zsp2I ATGCAT 1 cut(s) 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.