Rh2CG597200

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000317
Physical Location & Seq
Forward (+)
77285204 .. 77286401
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG597200.1

Sequence Viewer

Length: 924 bp
ATGGGGGGAAAAAAGGAAGATAAGAAGAAAGGTTGTACATCGTCTATGCGCTCCGTTTTCATGCACGCCGATGGTGTCGATAAAGTCCTGATGATCTTTGGATTGTTGGGAGCCATCGGCGATGGCTGCTCTACTTCATTTGTCTTGCTAATCACTGGCCGCTTGATGAACAATGTCGGCGGCGCCTCAAGTGACGCTCAAGATGTTTTCTTGCATAACATCAATATGAATGCAGTGGCGCTATTGTACTTGGCTTGCGGATCATGGGTCAGTTGTTTCCTAGAGGGGTATTGTTGGACAAGAACTGGTGAGAGACAAGCAGCTAGAATGAGAGTAACATATTTGAAAGCAGTTCTAAGGCAAGATGTGGGTTACTTTGATCTGCATGTCACAAGCACATCTGAGGTCATCACCAGCATCTCTTGTGATAGCCTCGTGATTCAAGACTTCCTCAGTGAAAAGGTGCCAAACTTTATAATGAACTGCTCTTTGTTCTTTGGGAGCTATGTGGCGGCATTCATAATGTTGTGGAGGCTAGCCATCGTTGCATTTCCGTTTGTGGAACTTCTGGTAATTCCGGGATTGATTTACGGAAGGATTTTGATGGGACTGGCTAGGCAGATTAGAGATGAATACAACAAGACTGGAACAATAGCAGAACAGGCACTGTCATCAATCAGAACCGTTTACGCGTTTGTTGGGGAAACGAAAACAATTTCGGAGTTCTCTGCAGCTCTACAAGGCTCAGTGAAGCTGGGATTGAGTCAAGGCCTGGCAAAAGGCTTGGCCATTGGTAGCAACGGCATCGCTTTTGCTATTTGGTCTTTCATGTCCTACTATGGCAGCAGAATGGTCATGTATCATGGCGCACTTGGAGGCACTGTTGTATCAGCTGGTACTGGAATAATCCTTGGTGGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

307

Amino Acids

33.11

Weight (kDa)

8.63

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 31 - 289 1.1e-42 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AccB1I GGYRCC 2 cut(s) 182, 463
AccII CGCG 1 cut(s) 692
AciI CCGC 4 cut(s) 160, 180, 258, 512
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 2 cut(s) 157, 786
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 3 cut(s) 37, 248, 898
AflIII ACRYGT 1 cut(s) 690
AgsI TTSAA 2 cut(s) 346, 443
AjnI CCWGG 1 cut(s) 771
AluBI AGCT 5 cut(s) 323, 504, 734, 754, 893
AluI AGCT 5 cut(s) 323, 504, 734, 754, 893
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 667
AoxI GGCC 3 cut(s) 157, 769, 786
ApeKI GCWGC 4 cut(s) 126, 320, 731, 843
AspLEI GCGC 4 cut(s) 51, 185, 241, 869
AsuC2I CCSGG 1 cut(s) 579
AsuHPI GGTGA 2 cut(s) 320, 403
AsuNHI GCTAGC 1 cut(s) 535
BaeI ACNNNNGTAYC 2 cut(s) 870, 903
BalI TGGCCA 1 cut(s) 788
BanI GGYRCC 2 cut(s) 182, 463
BauI CACGAG 1 cut(s) 434
BbvI GCAGC 4 cut(s) 113, 332, 743, 855
BccI CCATC 5 cut(s) 65, 116, 122, 548, 598
BceAI ACGGC 1 cut(s) 817
BcgI CGANNNNNNTGC 2 cut(s) 787, 821
BciT130I CCWGG 1 cut(s) 773
BcnI CCSGG 1 cut(s) 579
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 4 cut(s) 281, 324, 536, 615
BfmI CTRYAG 1 cut(s) 729
BfoI RGCGCY 2 cut(s) 186, 242
BisI GCNGC 7 cut(s) 127, 160, 181, 321, 513, 732, 844
BlsI GCNGC 7 cut(s) 128, 161, 182, 322, 514, 733, 845
Bme1390I CCNGG 2 cut(s) 579, 773
BmiI GGNNCC 3 cut(s) 112, 184, 465
BmrFI CCNGG 2 cut(s) 579, 773
BmsI GCATC 2 cut(s) 426, 813
BmtI GCTAGC 1 cut(s) 539
BpuEI CTTGAG 2 cut(s) 172, 183
BpuMI CCSGG 1 cut(s) 579
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 910
BsaXI ACNNNNNCTCC 2 cut(s) 867, 897
Bse1I ACTGG 5 cut(s) 160, 310, 615, 649, 904
BseBI CCWGG 1 cut(s) 773
BseDI CCNNGG 1 cut(s) 910
BseMII CTCAG 3 cut(s) 393, 466, 759
BseNI ACTGG 5 cut(s) 160, 310, 615, 649, 904
BseXI GCAGC 4 cut(s) 113, 332, 743, 855
BseYI CCCAGC 1 cut(s) 754
Bsh1236I CGCG 1 cut(s) 692
BshFI GGCC 3 cut(s) 159, 771, 788
BshNI GGYRCC 2 cut(s) 182, 463
BsiSI CCGG 1 cut(s) 578
BslFI GGGAC 1 cut(s) 621
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 621
BsmI GAATGC 2 cut(s) 235, 515
BsnI GGCC 3 cut(s) 159, 771, 788
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 3 cut(s) 93, 260, 379
BspACI CCGC 4 cut(s) 160, 180, 258, 512
BspANI GGCC 3 cut(s) 159, 771, 788
BspCNI CTCAG 3 cut(s) 394, 465, 758
BspFNI CGCG 1 cut(s) 692
BspLI GGNNCC 3 cut(s) 112, 184, 465
BspMAI CTGCAG 1 cut(s) 733
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 2 cut(s) 182, 463
BsrGI TGTACA 1 cut(s) 35
BsrI ACTGG 5 cut(s) 160, 310, 615, 649, 904
BssECI CCNNGG 1 cut(s) 910
BssMI GATC 3 cut(s) 93, 260, 379
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 910
Bst2BI CACGAG 1 cut(s) 434
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 3 cut(s) 669, 685, 883
BstACI GRCGYC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 66, 256, 537
BstDEI CTNAG 4 cut(s) 356, 402, 452, 745
BstFNI CGCG 1 cut(s) 692
BstH2I RGCGCY 2 cut(s) 186, 242
BstHHI GCGC 4 cut(s) 51, 185, 241, 869
BstKTI GATC 3 cut(s) 96, 263, 382
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 3 cut(s) 93, 260, 379
BstMWI GCNNNNNNNGC 3 cut(s) 126, 545, 662
BstNI CCWGG 1 cut(s) 773
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 2 cut(s) 577, 771
BstSFI CTRYAG 1 cut(s) 729
BstUI CGCG 1 cut(s) 692
BstV1I GCAGC 4 cut(s) 113, 332, 743, 855
BsuRI GGCC 3 cut(s) 159, 771, 788
BtgZI GCGATG 2 cut(s) 135, 790
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 6 cut(s) 153, 240, 460, 665, 753, 879
Cac8I GCNNGC 3 cut(s) 66, 256, 537
CaiI CAGNNNCTG 1 cut(s) 667
CfoI GCGC 4 cut(s) 51, 185, 241, 869
CseI GACGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 36, 247, 897
CviAII CATG 6 cut(s) 61, 264, 386, 829, 856, 863
CviQI GTAC 3 cut(s) 36, 247, 897
DdeI CTNAG 4 cut(s) 356, 402, 452, 745
DinI GGCGCC 1 cut(s) 184
DpnI GATC 3 cut(s) 95, 262, 381
DpnII GATC 3 cut(s) 93, 260, 379
EaeI YGGCCR 2 cut(s) 157, 786
Eco130I CCWWGG 1 cut(s) 910
Eco147I AGGCCT 1 cut(s) 771
EcoRII CCWGG 1 cut(s) 771
EcoT14I CCWWGG 1 cut(s) 910
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 910
FaeI CATG 6 cut(s) 64, 267, 389, 832, 859, 866
FaqI GGGAC 1 cut(s) 621
FatI CATG 6 cut(s) 60, 263, 385, 828, 855, 862
Fnu4HI GCNGC 7 cut(s) 127, 160, 181, 321, 513, 732, 844
Fsp4HI GCNGC 7 cut(s) 127, 160, 181, 321, 513, 732, 844
FspBI CTAG 4 cut(s) 281, 324, 536, 615
GlaI GCGC 4 cut(s) 50, 184, 240, 868
GluI GCNGC 7 cut(s) 127, 160, 181, 321, 513, 732, 844
GsaI CCCAGC 1 cut(s) 758
HaeII RGCGCY 2 cut(s) 186, 242
HaeIII GGCC 3 cut(s) 159, 771, 788
HapII CCGG 1 cut(s) 578
HgaI GACGC 1 cut(s) 203
HhaI GCGC 4 cut(s) 51, 185, 241, 869
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 6 cut(s) 64, 267, 389, 832, 859, 866
Hin6I GCGC 4 cut(s) 49, 183, 239, 867
HinP1I GCGC 4 cut(s) 49, 183, 239, 867
HinfI GANTC 2 cut(s) 439, 763
HpaII CCGG 1 cut(s) 578
HphI GGTGA 2 cut(s) 320, 403
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 3 cut(s) 403, 680, 721
Hpy188III TCNNGA 4 cut(s) 88, 200, 436, 443
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 1 cut(s) 588
HpyCH4III ACNGT 3 cut(s) 669, 685, 883
HpyCH4V TGCA 6 cut(s) 64, 214, 233, 385, 548, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 545, 662
HpyF3I CTNAG 4 cut(s) 356, 402, 452, 745
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 6 cut(s) 64, 267, 389, 832, 859, 866
HspAI GCGC 4 cut(s) 49, 183, 239, 867
KasI GGCGCC 1 cut(s) 182
Kzo9I GATC 3 cut(s) 93, 260, 379
LmnI GCTCC 3 cut(s) 56, 110, 501
Lsp1109I GCAGC 4 cut(s) 113, 332, 743, 855
LweI GCATC 2 cut(s) 426, 813
MaeI CTAG 4 cut(s) 281, 324, 536, 615
MaeIII GTNAC 4 cut(s) 191, 334, 371, 388
MalI GATC 3 cut(s) 95, 262, 381
MboI GATC 3 cut(s) 93, 260, 379
MboII GAAGA 2 cut(s) 29, 37
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 2 cut(s) 573, 714
MluI ACGCGT 1 cut(s) 690
MluNI TGGCCA 1 cut(s) 788
Mly113I GGCGCC 1 cut(s) 183
MlyI GAGTC 1 cut(s) 772
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 7 cut(s) 196, 277, 397, 443, 461, 525, 869
Mox20I TGGCCA 1 cut(s) 788
MscI TGGCCA 1 cut(s) 788
MslI CAYNNNNRTG 2 cut(s) 69, 224
Msp20I TGGCCA 1 cut(s) 788
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 1 cut(s) 578
MspR9I CCNGG 2 cut(s) 579, 773
Mva1269I GAATGC 2 cut(s) 235, 515
MvaI CCWGG 1 cut(s) 773
MvnI CGCG 1 cut(s) 692
MwoI GCNNNNNNNGC 3 cut(s) 126, 545, 662
NarI GGCGCC 1 cut(s) 183
NciI CCSGG 1 cut(s) 579
NdeII GATC 3 cut(s) 93, 260, 379
NheI GCTAGC 1 cut(s) 535
NlaIII CATG 6 cut(s) 64, 267, 389, 832, 859, 866
NlaIV GGNNCC 3 cut(s) 112, 184, 465
NmuCI GTSAC 2 cut(s) 191, 388
NspI RCATGY 1 cut(s) 389
PceI AGGCCT 1 cut(s) 771
PctI GAATGC 2 cut(s) 235, 515
PfeI GAWTC 1 cut(s) 439
PfoI TCCNGGA 1 cut(s) 577
PkrI GCNGC 7 cut(s) 128, 161, 182, 322, 514, 733, 845
PleI GAGTC 1 cut(s) 771
PluTI GGCGCC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 771
PsiI TTATAA 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 771
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 3 cut(s) 112, 184, 465
PstI CTGCAG 1 cut(s) 733
PstNI CAGNNNCTG 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 3 cut(s) 37, 248, 898
RsaNI GTAC 3 cut(s) 36, 247, 897
RseI CAYNNNNRTG 2 cut(s) 69, 224
SatI GCNGC 7 cut(s) 127, 160, 181, 321, 513, 732, 844
Sau3AI GATC 3 cut(s) 93, 260, 379
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 2 cut(s) 579, 773
SetI ASST 8 cut(s) 34, 325, 408, 465, 506, 736, 756, 895
SfaNI GCATC 2 cut(s) 426, 813
SfcI CTRYAG 1 cut(s) 729
SfoI GGCGCC 1 cut(s) 184
SmiMI CAYNNNNRTG 2 cut(s) 69, 224
SmlI CTYRAG 2 cut(s) 187, 198
SmoI CTYRAG 2 cut(s) 187, 198
Sse9I AATT 2 cut(s) 573, 714
SseBI AGGCCT 1 cut(s) 771
SsiI CCGC 4 cut(s) 160, 180, 258, 512
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 4 cut(s) 281, 324, 536, 615
StuI AGGCCT 1 cut(s) 771
StyD4I CCNGG 2 cut(s) 577, 771
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 3 cut(s) 669, 685, 883
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 573, 714
TatI WGTACW 2 cut(s) 35, 246
TauI GCSGC 3 cut(s) 162, 183, 515
TfiI GAWTC 1 cut(s) 439
TscAI CASTG 6 cut(s) 160, 240, 460, 672, 753, 886
TseFI GTSAC 2 cut(s) 191, 388
TseI GCWGC 4 cut(s) 126, 320, 731, 843
Tsp45I GTSAC 2 cut(s) 191, 388
TspDTI ATGAA 8 cut(s) 49, 126, 182, 242, 494, 508, 645, 817
TspGWI ACGGA 3 cut(s) 43, 543, 606
TspRI CASTG 6 cut(s) 160, 240, 460, 672, 753, 886
XceI RCATGY 1 cut(s) 389
XspI CTAG 4 cut(s) 281, 324, 536, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.