Rmu_ssc0000389.1_g000024

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000389.1
OG0000317
Physical Location & Seq
Reverse (-)
144714 .. 145913
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000389.1_g000024.1.cds

Sequence Viewer

Length: 1014 bp
atgggtctaataattgcatggaggcttgccatactcatcattgctgtccaacccatagtcatcctcagcctctatgctaagcgtgtcctactcaaaagaatatccatcagagccaccaaagcccaagaggaaagttgtaagcttgcagctgaagctatctacaaccaccgaactgttactgccttctcggcccagaacagggttttgaaaatgctagacaaggcccaagaaaccccacgtagagaaaacctgcaacaatcgtggtttgcaggtatcggactcaggttcgccgagagcattacagtcatcaattgggggctgagttattggtatggcagcaggcttgtccaccaaggctaccttactccaagatcagtctttgagactatcctcattttagtaactaccggttgggtcatagcaaatgtcggaagcatgacatcggatcttgccatcggcttggatgcaatcacgtccatttttagtatcttagaccggaccaccagaatagaacaccgagctccagaagaagtccaggtagaaaagataacaagtcatgtccaattctgtgatgtgtactttgtgtacccaaataggcccaatgtgatggtcctccaaggcttctctatccacattgaagcaggaaagtcgatagcattggtcggacaaagtggatcagataagattgatgaaatgatgatcatcgaggctgcaaggagtgccaatgctcatgattttatcagtggattaatcgacgggtacaacacattgtgtggagacaaaggggtgcagctatctgggggacaaaaacaacgtatagcaatagccagggctatactgaaaaaaccagcagtgttgctattagatgaagcaaccagtgcacttgatagtcaatccgagaaggtattgcaagactcgttagagaggttgaggttcgataggactaatgtggttgtggctcacaggttaagtactatacagaactgtgagctcattgtggtgcttgataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

337

Amino Acids

37.49

Weight (kDa)

8.82

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 258, 260
AclWI GGATC 2 cut(s) 453, 682
AcuI CTGAAG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 771
AfaI GTAC 4 cut(s) 578, 587, 761, 973
AfiI CCNNNNNNNGG 2 cut(s) 198, 199
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 2 cut(s) 208, 638
AjiI CACGTC 1 cut(s) 474
AjnI CCWGG 2 cut(s) 534, 827
AluBI AGCT 6 cut(s) 142, 149, 155, 521, 793, 991
AluI AGCT 6 cut(s) 142, 149, 155, 521, 793, 991
Alw21I GWGCWC 3 cut(s) 523, 883, 993
Alw26I GTCTC 2 cut(s) 377, 771
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 2 cut(s) 453, 682
AoxI GGCC 3 cut(s) 189, 222, 596
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 4 cut(s) 146, 336, 710, 790
AseI ATTAAT 1 cut(s) 749
AsiGI ACCGGT 1 cut(s) 407
AspS9I GGNCC 5 cut(s) 190, 223, 498, 597, 610
AvaII GGWCC 2 cut(s) 498, 610
BaeGI GKGCMC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 523, 993
Bbv12I GWGCWC 3 cut(s) 523, 883, 993
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 158, 348, 697, 802
BccI CCATC 3 cut(s) 113, 461, 601
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciT130I CCWGG 2 cut(s) 536, 829
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 2 cut(s) 377, 771
BfaI CTAG 1 cut(s) 215
BfuAI ACCTGC 2 cut(s) 258, 260
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 4 cut(s) 147, 337, 711, 791
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 4 cut(s) 148, 338, 712, 792
BmcAI AGTACT 1 cut(s) 973
Bme1390I CCNGG 2 cut(s) 536, 829
Bme18I GGWCC 2 cut(s) 498, 610
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 5 cut(s) 190, 223, 498, 597, 610
BmrFI CCNGG 2 cut(s) 536, 829
BmsI GCATC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 701
BsaJI CCNNGG 3 cut(s) 352, 616, 828
BsaWI WCCGGW 2 cut(s) 407, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 199
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 876
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 701
BseBI CCWGG 2 cut(s) 536, 829
BseDI CCNNGG 3 cut(s) 352, 616, 828
BseGI GGATG 2 cut(s) 60, 469
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 2 cut(s) 198, 199
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 3 cut(s) 79, 295, 311
BseNI ACTGG 1 cut(s) 876
BseSI GKGCMC 1 cut(s) 883
BseXI GCAGC 4 cut(s) 158, 348, 697, 802
BsgI GTGCAG 1 cut(s) 809
BshFI GGCC 3 cut(s) 191, 224, 598
BshTI ACCGGT 1 cut(s) 407
BsiHKAI GWGCWC 3 cut(s) 523, 883, 993
BsiSI CCGG 2 cut(s) 408, 496
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 2 cut(s) 198, 199
BsmAI GTCTC 2 cut(s) 377, 771
BsmFI GGGAC 1 cut(s) 816
BsnI GGCC 3 cut(s) 191, 224, 598
Bsp1286I GDGCHC 3 cut(s) 523, 883, 993
Bsp143I GATC 4 cut(s) 371, 445, 674, 699
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 3 cut(s) 191, 224, 598
BspCNI CTCAG 3 cut(s) 78, 294, 312
BspHI TCATGA 1 cut(s) 730
BspMI ACCTGC 2 cut(s) 258, 260
BspPI GGATC 2 cut(s) 453, 682
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 1 cut(s) 876
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 352, 616, 828
BssMI GATC 4 cut(s) 371, 445, 674, 699
BssT1I CCWWGG 2 cut(s) 352, 616
Bst2UI CCWGG 2 cut(s) 536, 829
Bst4CI ACNGT 3 cut(s) 175, 304, 986
BstAPI GCANNNNNTGC 2 cut(s) 719, 878
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 27, 144, 341
BstDEI CTNAG 5 cut(s) 65, 78, 281, 320, 490
BstF5I GGATG 2 cut(s) 60, 469
BstKTI GATC 4 cut(s) 374, 448, 677, 702
BstMAI GTCTC 2 cut(s) 377, 771
BstMBI GATC 4 cut(s) 371, 445, 674, 699
BstMWI GCNNNNNNNGC 5 cut(s) 119, 152, 188, 719, 878
BstNI CCWGG 2 cut(s) 536, 829
BstSCI CCNGG 2 cut(s) 534, 827
BstSLI GKGCMC 1 cut(s) 883
BstV1I GCAGC 4 cut(s) 158, 348, 697, 802
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 2 cut(s) 460, 607
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 3 cut(s) 191, 224, 598
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 60, 469
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 3 cut(s) 748, 858, 883
BveI ACCTGC 2 cut(s) 258, 260
Cac8I GCNNGC 3 cut(s) 27, 144, 341
CciI TCATGA 1 cut(s) 730
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 5 cut(s) 190, 223, 498, 597, 610
Csp6I GTAC 4 cut(s) 577, 586, 760, 972
CspAI ACCGGT 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 4 cut(s) 18, 436, 557, 731
CviQI GTAC 4 cut(s) 577, 586, 760, 972
DdeI CTNAG 5 cut(s) 65, 78, 281, 320, 490
DpnI GATC 4 cut(s) 373, 447, 676, 701
DpnII GATC 4 cut(s) 371, 445, 674, 699
DraIII CACNNNGTG 1 cut(s) 771
Ecl136II GAGCTC 2 cut(s) 521, 991
Eco130I CCWWGG 2 cut(s) 352, 616
Eco24I GRGCYC 2 cut(s) 523, 993
Eco47I GGWCC 2 cut(s) 498, 610
Eco53kI GAGCTC 2 cut(s) 521, 991
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 2 cut(s) 521, 991
EcoRII CCWGG 2 cut(s) 534, 827
EcoT14I CCWWGG 2 cut(s) 352, 616
EcoT38I GRGCYC 2 cut(s) 523, 993
ErhI CCWWGG 2 cut(s) 352, 616
FaeI CATG 4 cut(s) 21, 439, 560, 734
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 816
FatI CATG 4 cut(s) 17, 435, 556, 730
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 147, 337, 711, 791
FokI GGATG 2 cut(s) 47, 476
FriOI GRGCYC 2 cut(s) 523, 993
Fsp4HI GCNGC 4 cut(s) 147, 337, 711, 791
FspBI CTAG 1 cut(s) 215
GluI GCNGC 4 cut(s) 147, 337, 711, 791
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 3 cut(s) 191, 224, 598
HapII CCGG 2 cut(s) 408, 496
Hin1II CATG 4 cut(s) 21, 439, 560, 734
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 2 cut(s) 279, 914
HpaII CCGG 2 cut(s) 408, 496
Hpy166II GTNNAC 4 cut(s) 349, 577, 586, 881
Hpy188I TCNGA 7 cut(s) 110, 278, 431, 445, 665, 679, 898
Hpy188III TCNNGA 2 cut(s) 524, 731
Hpy8I GTNNAC 4 cut(s) 349, 577, 586, 881
Hpy99I CGWCG 1 cut(s) 758
HpyAV CCTTC 2 cut(s) 193, 895
HpyCH4III ACNGT 3 cut(s) 175, 304, 986
HpyCH4IV ACGT 3 cut(s) 238, 473, 814
HpyCH4V TGCA 9 cut(s) 17, 146, 253, 269, 467, 713, 790, 881, 910
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 152, 188, 719, 878
HpyF3I CTNAG 5 cut(s) 65, 78, 281, 320, 490
HpySE526I ACGT 3 cut(s) 238, 473, 814
Hsp92II CATG 4 cut(s) 21, 439, 560, 734
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 4 cut(s) 371, 445, 674, 699
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 4 cut(s) 158, 348, 697, 802
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 215
MaeII ACGT 3 cut(s) 238, 473, 814
MaeIII GTNAC 2 cut(s) 175, 400
MalI GATC 4 cut(s) 373, 447, 676, 701
MboI GATC 4 cut(s) 371, 445, 674, 699
MboII GAAGA 1 cut(s) 539
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 3 cut(s) 523, 883, 993
MluCI AATT 3 cut(s) 12, 310, 563
MlyI GAGTC 2 cut(s) 273, 908
MmeI TCCRAC 3 cut(s) 73, 409, 643
MnlI CCTC 9 cut(s) 15, 74, 80, 121, 401, 623, 700, 918, 924
MseI TTAA 2 cut(s) 749, 968
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 408, 496
MspR9I CCNGG 2 cut(s) 536, 829
MunI CAATTG 1 cut(s) 310
MvaI CCWGG 2 cut(s) 536, 829
MwoI GCNNNNNNNGC 5 cut(s) 119, 152, 188, 719, 878
NdeII GATC 4 cut(s) 371, 445, 674, 699
NlaIII CATG 4 cut(s) 21, 439, 560, 734
NmeAIII GCCGAG 2 cut(s) 167, 316
PagI TCATGA 1 cut(s) 730
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 4 cut(s) 148, 338, 712, 792
PleI GAGTC 2 cut(s) 273, 908
PpsI GAGTC 2 cut(s) 273, 908
Ppu21I YACGTR 1 cut(s) 239
PshBI ATTAAT 1 cut(s) 749
Psp124BI GAGCTC 2 cut(s) 523, 993
Psp6I CCWGG 2 cut(s) 534, 827
PspGI CCWGG 2 cut(s) 534, 827
PspPI GGNCC 5 cut(s) 190, 223, 498, 597, 610
PsuI RGATCY 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 4 cut(s) 578, 587, 761, 973
RsaNI GTAC 4 cut(s) 577, 586, 760, 972
RseI CAYNNNNRTG 1 cut(s) 998
SacI GAGCTC 2 cut(s) 523, 993
SaqAI TTAA 2 cut(s) 749, 968
SatI GCNGC 4 cut(s) 147, 337, 711, 791
Sau3AI GATC 4 cut(s) 371, 445, 674, 699
Sau96I GGNCC 5 cut(s) 190, 223, 498, 597, 610
ScaI AGTACT 1 cut(s) 973
SchI GAGTC 2 cut(s) 273, 908
ScrFI CCNGG 2 cut(s) 536, 829
SduI GDGCHC 3 cut(s) 523, 883, 993
SfaNI GCATC 1 cut(s) 454
SinI GGWCC 2 cut(s) 498, 610
SmiMI CAYNNNNRTG 1 cut(s) 998
Sse9I AATT 3 cut(s) 12, 310, 563
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 2 cut(s) 523, 993
StyD4I CCNGG 2 cut(s) 534, 827
StyI CCWWGG 2 cut(s) 352, 616
TaaI ACNGT 3 cut(s) 175, 304, 986
TaiI ACGT 3 cut(s) 241, 476, 817
TaqI TCGA 4 cut(s) 650, 705, 753, 936
TasI AATT 3 cut(s) 12, 310, 563
TatI WGTACW 2 cut(s) 576, 971
Tru1I TTAA 2 cut(s) 749, 968
Tru9I TTAA 2 cut(s) 749, 968
TscAI CASTG 3 cut(s) 748, 858, 883
TseI GCWGC 4 cut(s) 146, 336, 710, 790
TspDTI ATGAA 2 cut(s) 705, 882
TspRI CASTG 3 cut(s) 748, 858, 883
VneI GTGCAC 1 cut(s) 879
VpaK11BI GGWCC 2 cut(s) 498, 610
VspI ATTAAT 1 cut(s) 749
XspI CTAG 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.