RchiOBHm_Chr2g0169791

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000317
Physical Location & Seq
Forward (+)
83925512 .. 83926264
753 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53736

Sequence Viewer

Length: 753 bp
ATGGGTCTAATAATTGCATGGAGGCTTGCCATACTCATCATTGCTGTCCAACCCATAGTCATCCTCAGCCTCTATGCTAAGCGTGTCCTACTCAAAAGAATATCCATCAGAGCCACCAAAACCCAAGAGGAAAGTTGTAAGCTTGCAGCTGAAGCTATCTACAACCACCGAACTATTACTGCCTTCTCGGCCCAGAACAGGGTTTTGAAAATGCTAGACAAGGCCCAAGAAACCCCACGTAGAGAAAACCTGCAACAATCGTGGTTTGCAGGTATCAGACTCGGGTTCGCCGAGAGCATTACAGTCATCAATTGGGGGCTGAGTTATTGGTATGGCAGCAGGCTTGTCCACCAAGGCTACCTTACTCCAAGATCAGTCTTTGAGACTATCCTCATTTTAGTAACTACCGGTTGGGTCATAGCAAATGTCGGAAGCATGACATCGGATCTTGCCATCGGCTTGGATGCAATCACGTCCATTTTTAGTATCTTAGACCGGACCACCAGAATAGAACACCGAGCTCCAGAAGAAGTCCAGGTAGAAAAGATAACAAGTCATGTCCAATTCTGTGATGTGTACTTTGTGTACCCAAATAGGCCCAATGTGATGGTCCTCCAAGGCTTCTCTATCCACATTGAAGCAGGAAAGTCGATAGCATTGGTCGGACAAAGTGGATCAGGTAAGTCAACAGTCATCGCATTAATCGAGAGGTTCTATGATCCAAACCAAGGTGTAGTGGAAATAGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

250

Amino Acids

27.96

Weight (kDa)

9.1

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 1 - 133 5.7e-19 ABC transporter transmembrane region
ABC_tran PF00005 205 - 250 2.5e-09 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 258, 260
AclWI GGATC 3 cut(s) 453, 682, 713
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 578, 587
AfiI CCNNNNNNNGG 3 cut(s) 198, 199, 728
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 2 cut(s) 208, 638
AjiI CACGTC 1 cut(s) 474
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 4 cut(s) 142, 149, 155, 521
AluI AGCT 4 cut(s) 142, 149, 155, 521
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 3 cut(s) 453, 682, 713
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 3 cut(s) 189, 222, 596
ApeKI GCWGC 2 cut(s) 146, 336
AseI ATTAAT 1 cut(s) 701
AsiGI ACCGGT 1 cut(s) 407
AspS9I GGNCC 5 cut(s) 190, 223, 498, 597, 610
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 498, 610
BanII GRGCYC 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 523
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 158, 348
BccI CCATC 4 cut(s) 113, 461, 601, 740
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciT130I CCWGG 1 cut(s) 536
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 215
BfuAI ACCTGC 2 cut(s) 258, 260
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 147, 337
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 2 cut(s) 148, 338
Bme1390I CCNGG 1 cut(s) 536
Bme18I GGWCC 2 cut(s) 498, 610
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 5 cut(s) 190, 223, 498, 597, 610
BmrFI CCNGG 1 cut(s) 536
BmsI GCATC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 352, 616, 727
BsaWI WCCGGW 2 cut(s) 407, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 199, 728
Bse118I RCCGGY 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 3 cut(s) 352, 616, 727
BseGI GGATG 2 cut(s) 60, 469
BseLI CCNNNNNNNGG 3 cut(s) 198, 199, 728
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 79, 311
BseXI GCAGC 2 cut(s) 158, 348
BshFI GGCC 3 cut(s) 191, 224, 598
BshTI ACCGGT 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 408, 496
BslI CCNNNNNNNGG 3 cut(s) 198, 199, 728
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 3 cut(s) 191, 224, 598
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 4 cut(s) 371, 445, 674, 718
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 3 cut(s) 191, 224, 598
BspCNI CTCAG 2 cut(s) 78, 312
BspMI ACCTGC 2 cut(s) 258, 260
BspPI GGATC 3 cut(s) 453, 682, 713
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 352, 616, 727
BssMI GATC 4 cut(s) 371, 445, 674, 718
BssT1I CCWWGG 3 cut(s) 352, 616, 727
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 304, 691
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 27, 144, 341
BstDEI CTNAG 4 cut(s) 65, 78, 320, 490
BstF5I GGATG 2 cut(s) 60, 469
BstKTI GATC 4 cut(s) 374, 448, 677, 721
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 4 cut(s) 371, 445, 674, 718
BstMWI GCNNNNNNNGC 2 cut(s) 152, 188
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 158, 348
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 2 cut(s) 460, 607
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 3 cut(s) 191, 224, 598
BtgZI GCGATG 1 cut(s) 679
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 60, 469
BveI ACCTGC 2 cut(s) 258, 260
Cac8I GCNNGC 3 cut(s) 27, 144, 341
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 5 cut(s) 190, 223, 498, 597, 610
Csp6I GTAC 2 cut(s) 577, 586
CspAI ACCGGT 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 3 cut(s) 18, 436, 557
CviQI GTAC 2 cut(s) 577, 586
DdeI CTNAG 4 cut(s) 65, 78, 320, 490
DpnI GATC 4 cut(s) 373, 447, 676, 720
DpnII GATC 4 cut(s) 371, 445, 674, 718
Ecl136II GAGCTC 1 cut(s) 521
Eco130I CCWWGG 3 cut(s) 352, 616, 727
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 498, 610
Eco53kI GAGCTC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 534
EcoT14I CCWWGG 3 cut(s) 352, 616, 727
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 3 cut(s) 352, 616, 727
FaeI CATG 3 cut(s) 21, 439, 560
FaiI YATR 9 cut(s) 19, 32, 56, 75, 333, 419, 437, 558, 717
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 3 cut(s) 17, 435, 556
Fnu4HI GCNGC 2 cut(s) 147, 337
FokI GGATG 2 cut(s) 47, 476
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 2 cut(s) 147, 337
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 147, 337
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 3 cut(s) 191, 224, 598
HapII CCGG 2 cut(s) 408, 496
Hin1II CATG 3 cut(s) 21, 439, 560
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 279
HpaII CCGG 2 cut(s) 408, 496
Hpy166II GTNNAC 4 cut(s) 349, 577, 586, 687
Hpy188I TCNGA 5 cut(s) 110, 278, 431, 445, 665
Hpy188III TCNNGA 2 cut(s) 524, 706
Hpy8I GTNNAC 4 cut(s) 349, 577, 586, 687
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 304, 691
HpyCH4IV ACGT 2 cut(s) 238, 473
HpyCH4V TGCA 5 cut(s) 17, 146, 253, 269, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 188
HpyF3I CTNAG 4 cut(s) 65, 78, 320, 490
HpySE526I ACGT 2 cut(s) 238, 473
Hsp92II CATG 3 cut(s) 21, 439, 560
Kzo9I GATC 4 cut(s) 371, 445, 674, 718
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 2 cut(s) 158, 348
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 215
MaeII ACGT 2 cut(s) 238, 473
MaeIII GTNAC 1 cut(s) 400
MalI GATC 4 cut(s) 373, 447, 676, 720
MboI GATC 4 cut(s) 371, 445, 674, 718
MboII GAAGA 1 cut(s) 539
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 3 cut(s) 12, 310, 563
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 3 cut(s) 73, 409, 643
MnlI CCTC 7 cut(s) 15, 74, 80, 121, 401, 623, 702
MseI TTAA 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 408, 496
MspR9I CCNGG 1 cut(s) 536
MunI CAATTG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 2 cut(s) 152, 188
NdeII GATC 4 cut(s) 371, 445, 674, 718
NlaIII CATG 3 cut(s) 21, 439, 560
NmeAIII GCCGAG 2 cut(s) 167, 316
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 702
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 2 cut(s) 148, 338
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 239
PshBI ATTAAT 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspPI GGNCC 5 cut(s) 190, 223, 498, 597, 610
PsuI RGATCY 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 578, 587
RsaNI GTAC 2 cut(s) 577, 586
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 2 cut(s) 147, 337
Sau3AI GATC 4 cut(s) 371, 445, 674, 718
Sau96I GGNCC 5 cut(s) 190, 223, 498, 597, 610
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 1 cut(s) 454
SinI GGWCC 2 cut(s) 498, 610
Sse9I AATT 3 cut(s) 12, 310, 563
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 1 cut(s) 534
StyI CCWWGG 3 cut(s) 352, 616, 727
TaaI ACNGT 2 cut(s) 304, 691
TaiI ACGT 2 cut(s) 241, 476
TaqI TCGA 2 cut(s) 650, 705
TasI AATT 3 cut(s) 12, 310, 563
TatI WGTACW 1 cut(s) 576
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TseI GCWGC 2 cut(s) 146, 336
VpaK11BI GGWCC 2 cut(s) 498, 610
VspI ATTAAT 1 cut(s) 701
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.