AT3G28415

Contains the following InterPro domains ATPase, AAA type, core (InterPro IPR003593), ABC transporter-like (InterPro IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro IPR011527), ABC transporter integral membrane type 1 (InterPro IPR017940), ABC transporter, transmembrane domain (InterPro IPR001140), ABC transporter, conserved site (InterPro IPR017871)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
10647123 .. 10651540
4418 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28415.2

Sequence Viewer

Length: 3666 bp
ATGAAGAGTTTTGGAAGCGTAAGATCAATATTCATGCATGCGAACAGTGTGGATTTAGTGCTGATGGGATTAGGTTTAATCGGAGCCGTCGGTGATGGCTTCATCACTCCTATAATATTTTTCATCACCGGGCTGCTACTCAACGACATCGGTGATTCCTCATTCGGTGATAAAACCTTCATGCATGCCATCATGAAGAATGCCGTAGCTTTGCTTTATGTCGCTGGTGCATCTTTGGTGATATGTTTCGTTGGGGAGAGACAAGCATCAAGAATGAGAGAGAAGTACTTAAGAGCAGTGTTAAGACAAGATGTGGGTTACTTTGATCTTCATGTTACAAGCACTTCTGATGTTATCACCAGTGTCTCTAGTGACACCCTCGTGATCCAAGACGTCCTTAGTGAAAAGTTACCAAATTTTTTGATGAGTGCATCGGCGTTTGTCGCAAGCTACATCGTGGGTTTCATCATGCTGTGGAGACTAACAATAGTAGGTTTCCCGTTCTTTATCCTCCTCTTGATCCCTGGACTGATGTGCGGACGAGCCCTCATCAACATCTCGAGAAAAATACGTGAAGAGTATAATGAGGCTGGTTCTATTGCCGAGCAAGCCATCTCGTTGGTGCGAACCGTCTACGCATTTGGTAGTGAGAGGAAGATGATATCGAAATTCTCAGCTGCGCTTGAAGGCTCAGTGAAGCTAGGGTTGAGACAAGGAATAGCTAAAGGAATCGCCATTGGGAGCAATGGTGTCACTTACGCCATTTGGGGGTTCATGACTTGGTACGGAAGTCGGATGGTTATGTACCATGGAGCTAAAGGCGGTACTATCTTCGCAGTCATCATATGCATCACCTATGGTGGCACATCACTTGGTCGAGGTTTGTCGAATCTCAAATATTTCTCCGAGGCGGTTGTAGCAGGGGAAAGGATTATTGAAGTGATAAAAAGAGTTCCCGATATTGATTCGGACAACCCGAGAGGTCAAGTTCTTGAGAATATTAAAGGAGAAGTCCAGTTTAAGCATGTGAAGTTCATGTACTCATCAAGACCCGAGACACCAATCTTTGATGATTTATGTCTAAGAATCCCATCTGGTAAATCTGTTGCTCTGGTGGGTGGAAGCGGATCAGGAAAATCAACTGTGATATCGCTTTTACAAAGATTTTATGACCCCATCGTAGGAGAGATTCTTATCGATGGTGTGTCTATTAAAAAGTTGCAAGTGAAATGGTTGAGATCACAAATGGGTCTAGTTAGCCAAGAGCCAGCACTCTTCGCCACATCGATAGAGGAGAACATATTATTTGGTAAAGAGGACGCATCCTTTGATGAAGTAGTGGAAGCTGCAAAGTCCTCAAATGCTCATGATTTCATTTCTCAGTTCCCTCTTGGTTACAAAACTCAGGTTGGGGAGAGAGGAGTGCAAATGTCAGGGGGTCAGAAGCAAAGGATTTCAATTGCACGTGCGATAATCAAATCACCGACACTTCTACTGCTAGACGAGGCAACAAGCGCATTAGATTCAGAATCCGAAAGAGTAGTCCAAGAAGCCTTAGACAATGCCACTATTGGTCGTACAACTATTGTTATTGCTCACCGCCTCTCTACTATTCGTAATGTTGATGTTATATGTGTATTCAAAAATGGTCAGATTGTAGAAACTGGATCACACGAAGAGCTCATGGAGAATGTAGATGGTCAATACACTTCTCTAGTCCGCTTACAAATCATGGAAAATGAAGAATCAAATGATAACGTTAGCGTAAGTATGCGAGAGGGTCAATTCTCAAATTTCAACAAAGACGTGAAGTATAGTTCAAGACTTTCTATTCAAAGTCGGTCTTCCCTTTTCGCAACTTCAAGCATTGATACAAATCTTGCTGGTTCAATTCCAAAGGATAAGAAGCCATCTTTTAAGAGATTGATGGCGATGAATAAACCAGAGTGGAAACATGCATTGTATGGTTGCTTAAGTGCAGTCTTGTATGGAGCCTTACACCCAATTTATGCATATGCTTCAGGATCAATGGTGTCAGTGTATTTTCTAACGAGTCATGATGAGATGAAGGAGAAAACAAGGATCTATGTGTTGCTTTTCGTTGGTCTAGCTGTTTTATGTTTCTTGATCAGTATCATTCAACAATATAGTTTTGCTTACATGGGTGAATACCTAACGAAACGTATACGAGAAAATATTCTCTCAAAGCTATTGACCTTTGAGGTAAGCTGGTTCGATGAAGACGAGAACTCGAGCGGATCAATTTGCTCTAGACTAGCCAAAGACGCAAACGTGGTGAGATCGCTTGTTGGTGAACGAGTGTCGTTGTTGGTACAAACTATATCAGCAGTGAGTGTAGCTTGCACACTTGGTTTGGCCATTTCTTGGAAATTATCCATTGTGATGATTGCAATACAACCAGTGGTTGTTGGATGCTTCTACACTCAACGCATTGTACTCAAAAGCATATCGAAAAAAGCCATTAAAGCACAAGATGAGAGCAGCAAACTAGCGGCAGAAGCTGTATCCAACATCCGAACCATAACAGCATTTTCGTCACAAGAACGGATCCTAAAATTACTCAAAATGGTTCAAGAAGGACCACAAAGAGAAAATATCCGTCAATCGTGGTTAGCAGGGATTGTGCTAGCAACTTCTAGAAGTCTCATGACATGCACTTCAGCTTTGAATTACTGGTACGGTGCTAGACTTATTATTGATGGGAAGATCACGTCAAAAGCATTCTTTGAGTTGTTTATACTCTTTGTGAGTACGGGTCGGGTTATTGCGGACGCGGGAGCAATGACGATGGATCTAGCCAAGGGCTCGGATGCGGTCGGATCAGTATTTGCGGTGTTAGATCGTTACACAAACATTGAACCGGAGAAACCGGATGGTTTCGTCCCACAAAACATAAAGGGACAAATAAAGTTTGTCAATGTGGACTTTGCGTACCCAACACGCCCTGATGTGATTATATTTAAGAACTTCTCCATTGATATTGACGAGGGAAAGTCGACAGCGATAGTGGGTCCAAGCGGGTCAGGTAAATCAACTATAATCGGGTTAATCGAACGGTTTTATGACCCGTTAAAGGGTATTGTAAAGATCGATGGTCGTGATATAAGGTCTTATCATTTGAGATCACTTCGTCAACACATAGGTTTGGTTAGCCAAGAGCCAATATTATTTGCTGGGACAATCCGAGAGAACATCATGTATGGAGGAGCATCTGACAAGATTGACGAGTCAGAGATTATCGAGGCGGCCAAGGCAGCCAACGCTCATGATTTCATCGTAACATTATCGGACGGCTATGATACGTACTGTGGAGACAGAGGAGTACAACTATCTGGTGGTCAAAAACAGAGGATCGCGATTGCTCGTGCGGTTTTGAAGAACCCATCAGTGTTGCTTCTTGATGAAGCTACGAGCGCTCTTGACAACCAATCAGAGCGCATGGTGCAGGATGCACTCGGGCGTTTGATGGTTGGAAGGACAAGTGTTGTGATCGCTCATAGGCTTAGCACCATTCAAAACTGTGACACGATAACTGTTTTAGACAAAGGGAAAGTTGTCGAATGTGGAACACACTCTTCCTTGTTAGCTAAAGGTCCTACGGGTGTATATTTCTCTCTGGTCAGTCTCCAAAGAACTCGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

1221

Amino Acids

133.94

Weight (kDa)

8.72

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 23 - 289 3.9e-47 ABC transporter transmembrane region
ABC_tran PF00005 365 - 513 8.7e-32 ABC transporter
ABC_membrane PF00664 663 - 928 1.4e-48 ABC transporter transmembrane region
ABC_tran PF00005 1003 - 1153 1.7e-32 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 2385
AccBSI CCGCTC 1 cut(s) 2256
AccI GTMKAC 3 cut(s) 633, 2185, 3017
AccII CGCG 2 cut(s) 2795, 3377
AclI AACGTT 1 cut(s) 1758
AcoI YGGCCR 2 cut(s) 2376, 3267
AcsI RAATTY 3 cut(s) 415, 668, 1792
AcuI CTGAAG 2 cut(s) 2004, 2664
AcvI CACGTG 1 cut(s) 1466
AcyI GRCGYC 1 cut(s) 393
AfeI AGCGCT 1 cut(s) 3436
AfiI CCNNNNNNNGG 5 cut(s) 768, 1181, 2385, 3094, 3095
AflII CTTAAG 2 cut(s) 289, 1972
AjiI CACGTC 2 cut(s) 1807, 2733
AjnI CCWGG 1 cut(s) 523
AleI CACNNNNGTG 1 cut(s) 380
Alw21I GWGCWC 1 cut(s) 1683
Alw26I GTCTC 8 cut(s) 253, 370, 472, 703, 1049, 2669, 3327, 3650
AlwNI CAGNNNCTG 1 cut(s) 2522
Ama87I CYCGRG 5 cut(s) 559, 976, 1052, 2251, 3476
Aor51HI AGCGCT 1 cut(s) 3436
AoxI GGCC 2 cut(s) 2376, 3267
ApeKI GCWGC 5 cut(s) 133, 677, 1346, 2502, 3275
ApoI RAATTY 3 cut(s) 415, 668, 1792
ArsI GACNNNNNNTTYG 4 cut(s) 1310, 1342, 1527, 1559
Asp700I GAANNNNTTC 1 cut(s) 2196
AspLEI GCGC 4 cut(s) 682, 1517, 3437, 3459
AspS9I GGNCC 3 cut(s) 2600, 3032, 3614
AsuC2I CCSGG 1 cut(s) 130
AsuNHI GCTAGC 1 cut(s) 2647
AvaI CYCGRG 5 cut(s) 559, 976, 1052, 2251, 3476
AvaII GGWCC 3 cut(s) 2600, 3032, 3614
BaeI ACNNNNGTAYC 2 cut(s) 775, 808
BalI TGGCCA 1 cut(s) 2378
BamHI GGATCC 1 cut(s) 2568
BanII GRGCYC 3 cut(s) 547, 1683, 2828
BarI GAAGNNNNNNTAC 2 cut(s) 1022, 1054
BauI CACGAG 2 cut(s) 380, 3384
BbrPI CACGTG 1 cut(s) 1466
BbsI GAAGAC 2 cut(s) 1836, 2247
Bbv12I GWGCWC 1 cut(s) 1683
BbvI GCAGC 5 cut(s) 120, 664, 1333, 2514, 3287
BceAI ACGGC 3 cut(s) 71, 188, 3328
BciT130I CCWGG 1 cut(s) 525
BciVI GTATCC 1 cut(s) 2536
BclI TGATCA 1 cut(s) 2127
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 8 cut(s) 253, 370, 472, 703, 1049, 2669, 3327, 3650
BfoI RGCGCY 1 cut(s) 3438
BfrI CTTAAG 2 cut(s) 289, 1972
BfuI GTATCC 1 cut(s) 2536
BisI GCNGC 7 cut(s) 134, 678, 1347, 2503, 2514, 3267, 3276
BlpI GCTNAGC 1 cut(s) 3524
BlsI GCNGC 7 cut(s) 135, 679, 1348, 2504, 2515, 3268, 3277
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 130, 525
Bme18I GGWCC 3 cut(s) 2600, 3032, 3614
BmeT110I CYCGRG 5 cut(s) 559, 976, 1052, 2251, 3476
BmgBI CACGTC 2 cut(s) 1807, 2733
BmgT120I GGNCC 3 cut(s) 2600, 3032, 3614
BmiI GGNNCC 4 cut(s) 85, 1993, 2570, 3033
BmrFI CCNGG 2 cut(s) 130, 525
BmsI GCATC 9 cut(s) 239, 275, 440, 858, 1331, 2423, 2821, 3239, 3460
BmtI GCTAGC 1 cut(s) 2651
BpiI GAAGAC 2 cut(s) 1836, 2247
Bpu1102I GCTNAGC 1 cut(s) 3524
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 1 cut(s) 130
Bsa29I ATCGAT 3 cut(s) 1197, 1286, 3111
BsaAI YACGTR 3 cut(s) 572, 1466, 3324
BsaBI GATNNNNATC 3 cut(s) 1193, 1875, 2132
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 5 cut(s) 523, 808, 906, 2820, 3270
BsaWI WCCGGW 2 cut(s) 2881, 2890
BsaXI ACNNNNNCTCC 2 cut(s) 733, 763
Bsc4I CCNNNNNNNGG 5 cut(s) 768, 1181, 2385, 3094, 3095
Bse1I ACTGG 5 cut(s) 360, 1015, 1669, 2420, 2699
Bse3DI GCAATG 2 cut(s) 751, 2808
Bse8I GATNNNNATC 3 cut(s) 1193, 1875, 2132
BseBI CCWGG 1 cut(s) 525
BseCI ATCGAT 3 cut(s) 1197, 1286, 3111
BseDI CCNNGG 5 cut(s) 523, 808, 906, 2820, 3270
BseGI GGATG 7 cut(s) 801, 1322, 2438, 2532, 2836, 2899, 3475
BseJI GATNNNNATC 3 cut(s) 1193, 1875, 2132
BseLI CCNNNNNNNGG 5 cut(s) 768, 1181, 2385, 3094, 3095
BseMI GCAATG 2 cut(s) 751, 2808
BseMII CTCAG 4 cut(s) 687, 705, 1394, 1418
BseNI ACTGG 5 cut(s) 360, 1015, 1669, 2420, 2699
BseRI GAGGAG 5 cut(s) 503, 1307, 1434, 3240, 3354
BseXI GCAGC 5 cut(s) 120, 664, 1333, 2514, 3287
BseYI CCCAGC 1 cut(s) 3194
BsgI GTGCAG 2 cut(s) 1998, 3485
Bsh1236I CGCG 2 cut(s) 2795, 3377
Bsh1285I CGRYCG 1 cut(s) 2838
BshFI GGCC 2 cut(s) 2378, 3269
BshVI ATCGAT 3 cut(s) 1197, 1286, 3111
BsiEI CGRYCG 1 cut(s) 2838
BsiHKAI GWGCWC 1 cut(s) 1683
BsiHKCI CYCGRG 5 cut(s) 559, 976, 1052, 2251, 3476
BsiSI CCGG 3 cut(s) 129, 2882, 2891
BslFI GGGAC 3 cut(s) 2888, 2934, 3211
BslI CCNNNNNNNGG 5 cut(s) 768, 1181, 2385, 3094, 3095
BsmAI GTCTC 8 cut(s) 253, 370, 472, 703, 1049, 2669, 3327, 3650
BsmFI GGGAC 3 cut(s) 2888, 2934, 3211
BsmI GAATGC 2 cut(s) 205, 2741
BsnI GGCC 2 cut(s) 2378, 3269
BsoBI CYCGRG 5 cut(s) 559, 976, 1052, 2251, 3476
Bsp1286I GDGCHC 3 cut(s) 547, 1683, 2828
Bsp1720I GCTNAGC 1 cut(s) 3524
Bsp19I CCATGG 1 cut(s) 808
Bsp68I TCGCGA 1 cut(s) 3377
BspANI GGCC 2 cut(s) 2378, 3269
BspCNI CTCAG 4 cut(s) 686, 704, 1393, 1417
BspDI ATCGAT 3 cut(s) 1197, 1286, 3111
BspFNI CGCG 2 cut(s) 2795, 3377
BspHI TCATGA 6 cut(s) 192, 774, 1366, 2056, 2667, 3286
BspLI GGNNCC 4 cut(s) 85, 1993, 2570, 3033
BspOI GCTAGC 1 cut(s) 2651
BspQI GCTCTTC 1 cut(s) 1671
BspTI CTTAAG 2 cut(s) 289, 1972
BsrBI CCGCTC 1 cut(s) 2256
BsrDI GCAATG 2 cut(s) 751, 2808
BsrI ACTGG 5 cut(s) 360, 1015, 1669, 2420, 2699
BssECI CCNNGG 5 cut(s) 523, 808, 906, 2820, 3270
BssNAI GTATAC 1 cut(s) 2186
BssNI GRCGYC 1 cut(s) 393
BssSI CACGAG 2 cut(s) 380, 3384
BssT1I CCWWGG 3 cut(s) 808, 2820, 3270
Bst1107I GTATAC 1 cut(s) 2186
Bst2BI CACGAG 2 cut(s) 380, 3384
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 8 cut(s) 47, 631, 1144, 2702, 3078, 3329, 3542, 3556
Bst6I CTCTTC 4 cut(s) 570, 1280, 1671, 3601
BstACI GRCGYC 1 cut(s) 393
BstAFI CTTAAG 2 cut(s) 289, 1972
BstBAI YACGTR 3 cut(s) 572, 1466, 3324
BstC8I GCNNGC 7 cut(s) 39, 186, 448, 609, 1269, 2362, 2649
BstDEI CTNAG 8 cut(s) 398, 673, 691, 1082, 1380, 1404, 1555, 3524
BstDSI CCRYGG 1 cut(s) 808
BstF5I GGATG 7 cut(s) 801, 1322, 2438, 2532, 2836, 2899, 3475
BstFNI CGCG 2 cut(s) 2795, 3377
BstH2I RGCGCY 1 cut(s) 3438
BstHHI GCGC 4 cut(s) 682, 1517, 3437, 3459
BstMAI GTCTC 8 cut(s) 253, 370, 472, 703, 1049, 2669, 3327, 3650
BstMCI CGRYCG 1 cut(s) 2838
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 5 cut(s) 41, 188, 1028, 1958, 2676
BstSCI CCNGG 2 cut(s) 128, 523
BstSNI TACGTA 1 cut(s) 3324
BstUI CGCG 2 cut(s) 2795, 3377
BstV1I GCAGC 5 cut(s) 120, 664, 1333, 2514, 3287
BstV2I GAAGAC 2 cut(s) 1836, 2247
BstX2I RGATCY 3 cut(s) 2082, 2568, 2812
BstXI CCANNNNNNTGG 1 cut(s) 619
BstYI RGATCY 3 cut(s) 2082, 2568, 2812
BstZ17I GTATAC 1 cut(s) 2186
Bsu15I ATCGAT 3 cut(s) 1197, 1286, 3111
BsuI GTATCC 1 cut(s) 2536
BsuRI GGCC 2 cut(s) 2378, 3269
BsuTUI ATCGAT 3 cut(s) 1197, 1286, 3111
BtgI CCRYGG 1 cut(s) 808
BtgZI GCGATG 1 cut(s) 1946
BtrI CACGTC 2 cut(s) 1807, 2733
BtsCI GGATG 7 cut(s) 801, 1322, 2438, 2532, 2836, 2899, 3475
BtsI GCAGTG 2 cut(s) 303, 2355
BtsIMutI CAGTG 8 cut(s) 52, 303, 367, 699, 2043, 2355, 2427, 3414
BtuMI TCGCGA 1 cut(s) 3377
Cac8I GCNNGC 7 cut(s) 39, 186, 448, 609, 1269, 2362, 2649
CaiI CAGNNNCTG 1 cut(s) 2522
CciI TCATGA 6 cut(s) 192, 774, 1366, 2056, 2667, 3286
CfoI GCGC 4 cut(s) 682, 1517, 3437, 3459
Cfr13I GGNCC 3 cut(s) 2600, 3032, 3614
ClaI ATCGAT 3 cut(s) 1197, 1286, 3111
CseI GACGC 3 cut(s) 1328, 2294, 2801
DdeI CTNAG 8 cut(s) 398, 673, 691, 1082, 1380, 1404, 1555, 3524
EaeI YGGCCR 2 cut(s) 2376, 3267
Eam1104I CTCTTC 4 cut(s) 570, 1280, 1671, 3601
EarI CTCTTC 4 cut(s) 570, 1280, 1671, 3601
Ecl136II GAGCTC 1 cut(s) 1681
Eco105I TACGTA 1 cut(s) 3324
Eco130I CCWWGG 3 cut(s) 808, 2820, 3270
Eco24I GRGCYC 3 cut(s) 547, 1683, 2828
Eco32I GATATC 2 cut(s) 663, 1149
Eco47I GGWCC 3 cut(s) 2600, 3032, 3614
Eco47III AGCGCT 1 cut(s) 3436
Eco53kI GAGCTC 1 cut(s) 1681
Eco57I CTGAAG 2 cut(s) 2004, 2664
Eco72I CACGTG 1 cut(s) 1466
Eco88I CYCGRG 5 cut(s) 559, 976, 1052, 2251, 3476
EcoICRI GAGCTC 1 cut(s) 1681
EcoO109I RGGNCCY 1 cut(s) 3614
EcoRII CCWGG 1 cut(s) 523
EcoRV GATATC 2 cut(s) 663, 1149
EcoT14I CCWWGG 3 cut(s) 808, 2820, 3270
EcoT22I ATGCAT 5 cut(s) 39, 186, 851, 1960, 2014
EcoT38I GRGCYC 3 cut(s) 547, 1683, 2828
ErhI CCWWGG 3 cut(s) 808, 2820, 3270
FalI AAGNNNNNCTT 4 cut(s) 381, 413, 1828, 1860
FaqI GGGAC 3 cut(s) 2888, 2934, 3211
FauI CCCGC 2 cut(s) 2788, 3032
FauNDI CATATG 2 cut(s) 845, 2014
FbaI TGATCA 1 cut(s) 2127
FblI GTMKAC 3 cut(s) 633, 2185, 3017
Fnu4HI GCNGC 7 cut(s) 134, 678, 1347, 2503, 2514, 3267, 3276
FokI GGATG 7 cut(s) 808, 1309, 2445, 2519, 2843, 2906, 3482
FriOI GRGCYC 3 cut(s) 547, 1683, 2828
Fsp4HI GCNGC 7 cut(s) 134, 678, 1347, 2503, 2514, 3267, 3276
GlaI GCGC 4 cut(s) 681, 1516, 3436, 3458
GluI GCNGC 7 cut(s) 134, 678, 1347, 2503, 2514, 3267, 3276
GsaI CCCAGC 1 cut(s) 3198
HaeII RGCGCY 1 cut(s) 3438
HaeIII GGCC 2 cut(s) 2378, 3269
HapII CCGG 3 cut(s) 129, 2882, 2891
HgaI GACGC 3 cut(s) 1328, 2294, 2801
HhaI GCGC 4 cut(s) 682, 1517, 3437, 3459
Hin1I GRCGYC 1 cut(s) 393
Hin6I GCGC 4 cut(s) 680, 1515, 3435, 3457
HinP1I GCGC 4 cut(s) 680, 1515, 3435, 3457
HincII GTYRAC 2 cut(s) 3018, 3155
HindII GTYRAC 2 cut(s) 3018, 3155
HpaII CCGG 3 cut(s) 129, 2882, 2891
Hpy166II GTNNAC 6 cut(s) 634, 2186, 2315, 2944, 3018, 3155
Hpy8I GTNNAC 6 cut(s) 634, 2186, 2315, 2944, 3018, 3155
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 5 cut(s) 187, 680, 2062, 2591, 3489
HpyCH4III ACNGT 8 cut(s) 47, 631, 1144, 2702, 3078, 3329, 3542, 3556
HpyCH4IV ACGT 9 cut(s) 393, 571, 1465, 1758, 1806, 2182, 2292, 2732, 3323
HpyF3I CTNAG 8 cut(s) 398, 673, 691, 1082, 1380, 1404, 1555, 3524
HpySE526I ACGT 9 cut(s) 393, 571, 1465, 1758, 1806, 2182, 2292, 2732, 3323
Hsp92I GRCGYC 1 cut(s) 393
HspAI GCGC 4 cut(s) 680, 1515, 3435, 3457
Ksp22I TGATCA 1 cut(s) 2127
LguI GCTCTTC 1 cut(s) 1671
LmnI GCTCC 6 cut(s) 83, 741, 812, 1991, 2798, 3227
Lsp1109I GCAGC 5 cut(s) 120, 664, 1333, 2514, 3287
LweI GCATC 9 cut(s) 239, 275, 440, 858, 1331, 2423, 2821, 3239, 3460
MaeII ACGT 9 cut(s) 393, 571, 1465, 1758, 1806, 2182, 2292, 2732, 3323
MbiI CCGCTC 1 cut(s) 2256
MfeI CAATTG 1 cut(s) 1458
MflI RGATCY 3 cut(s) 2082, 2568, 2812
MhlI GDGCHC 3 cut(s) 547, 1683, 2828
MlsI TGGCCA 1 cut(s) 2378
MluNI TGGCCA 1 cut(s) 2378
MlyI GAGTC 2 cut(s) 2062, 3257
MmeI TCCRAC 5 cut(s) 773, 2410, 2553, 2818, 3472
Mox20I TGGCCA 1 cut(s) 2378
Mph1103I ATGCAT 5 cut(s) 39, 186, 851, 1960, 2014
MroXI GAANNNNTTC 1 cut(s) 2196
MscI TGGCCA 1 cut(s) 2378
MslI CAYNNNNRTG 2 cut(s) 380, 2402
Msp20I TGGCCA 1 cut(s) 2378
MspA1I CMGCKG 1 cut(s) 677
MspCI CTTAAG 2 cut(s) 289, 1972
MspI CCGG 3 cut(s) 129, 2882, 2891
MspR9I CCNGG 2 cut(s) 130, 525
MunI CAATTG 1 cut(s) 1458
Mva1269I GAATGC 2 cut(s) 205, 2741
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 2 cut(s) 2795, 3377
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 808
NdeI CATATG 2 cut(s) 845, 2014
NheI GCTAGC 1 cut(s) 2647
NlaIV GGNNCC 4 cut(s) 85, 1993, 2570, 3033
NmeAIII GCCGAG 1 cut(s) 628
NmuCI GTSAC 4 cut(s) 371, 751, 2556, 3542
NruI TCGCGA 1 cut(s) 3377
NsiI ATGCAT 5 cut(s) 39, 186, 851, 1960, 2014
NspI RCATGY 5 cut(s) 41, 188, 1028, 1958, 2676
OliI CACNNNNGTG 1 cut(s) 380
PaeI GCATGC 2 cut(s) 41, 188
PaeR7I CTCGAG 2 cut(s) 559, 2251
PagI TCATGA 6 cut(s) 192, 774, 1366, 2056, 2667, 3286
PciSI GCTCTTC 1 cut(s) 1671
PcsI WCGNNNNNNNCGW 3 cut(s) 974, 2241, 3069
PctI GAATGC 2 cut(s) 205, 2741
PdmI GAANNNNTTC 1 cut(s) 2196
PfeI GAWTC 9 cut(s) 155, 729, 889, 965, 1086, 1189, 1523, 1529, 1745
PflMI CCANNNNNTGG 1 cut(s) 2385
PkrI GCNGC 7 cut(s) 135, 679, 1348, 2504, 2515, 3268, 3277
PleI GAGTC 2 cut(s) 2061, 3256
PmaCI CACGTG 1 cut(s) 1466
PmlI CACGTG 1 cut(s) 1466
PpsI GAGTC 2 cut(s) 2061, 3256
Ppu21I YACGTR 3 cut(s) 572, 1466, 3324
PpuMI RGGWCCY 1 cut(s) 3614
Psp124BI GAGCTC 1 cut(s) 1683
Psp1406I AACGTT 1 cut(s) 1758
Psp5II RGGWCCY 1 cut(s) 3614
Psp6I CCWGG 1 cut(s) 523
PspCI CACGTG 1 cut(s) 1466
PspFI CCCAGC 1 cut(s) 3194
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 4 cut(s) 85, 1993, 2570, 3033
PspPI GGNCC 3 cut(s) 2600, 3032, 3614
PspPPI RGGWCCY 1 cut(s) 3614
PspXI VCTCGAGB 1 cut(s) 2251
PstNI CAGNNNCTG 1 cut(s) 2522
PsuI RGATCY 3 cut(s) 2082, 2568, 2812
PvuII CAGCTG 1 cut(s) 677
RruI TCGCGA 1 cut(s) 3377
RseI CAYNNNNRTG 2 cut(s) 380, 2402
SacI GAGCTC 1 cut(s) 1683
SalI GTCGAC 1 cut(s) 3016
SapI GCTCTTC 1 cut(s) 1671
SatI GCNGC 7 cut(s) 134, 678, 1347, 2503, 2514, 3267, 3276
Sau96I GGNCC 3 cut(s) 2600, 3032, 3614
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 2 cut(s) 2062, 3257
ScrFI CCNGG 2 cut(s) 130, 525
SduI GDGCHC 3 cut(s) 547, 1683, 2828
SfaNI GCATC 9 cut(s) 239, 275, 440, 858, 1331, 2423, 2821, 3239, 3460
Sfr274I CTCGAG 2 cut(s) 559, 2251
SinI GGWCC 3 cut(s) 2600, 3032, 3614
SlaI CTCGAG 2 cut(s) 559, 2251
SmiMI CAYNNNNRTG 2 cut(s) 380, 2402
SmlI CTYRAG 5 cut(s) 289, 559, 992, 1972, 2251
SmoI CTYRAG 5 cut(s) 289, 559, 992, 1972, 2251
SnaBI TACGTA 1 cut(s) 3324
SphI GCATGC 2 cut(s) 41, 188
SspI AATATT 6 cut(s) 30, 117, 899, 1000, 2197, 3186
SstI GAGCTC 1 cut(s) 1683
StyD4I CCNGG 2 cut(s) 128, 523
StyI CCWWGG 3 cut(s) 808, 2820, 3270
TaaI ACNGT 8 cut(s) 47, 631, 1144, 2702, 3078, 3329, 3542, 3556
TaiI ACGT 9 cut(s) 396, 574, 1468, 1761, 1809, 2185, 2295, 2735, 3326
TaqII GACCGA 1 cut(s) 1830
TatI WGTACW 4 cut(s) 285, 1038, 2455, 3343
TauI GCSGC 2 cut(s) 2516, 3269
TfiI GAWTC 9 cut(s) 155, 729, 889, 965, 1086, 1189, 1523, 1529, 1745
TscAI CASTG 8 cut(s) 52, 303, 367, 699, 2043, 2355, 2427, 3414
TseFI GTSAC 4 cut(s) 371, 751, 2556, 3542
TseI GCWGC 5 cut(s) 133, 677, 1346, 2502, 3275
Tsp45I GTSAC 4 cut(s) 371, 751, 2556, 3542
TspGWI ACGGA 3 cut(s) 801, 2581, 2609
TspRI CASTG 8 cut(s) 52, 303, 367, 699, 2043, 2355, 2427, 3414
Van91I CCANNNNNTGG 1 cut(s) 2385
Vha464I CTTAAG 2 cut(s) 289, 1972
VpaK11BI GGWCC 3 cut(s) 2600, 3032, 3614
XapI RAATTY 3 cut(s) 415, 668, 1792
XbaI TCTAGA 2 cut(s) 2270, 2657
XceI RCATGY 5 cut(s) 41, 188, 1028, 1958, 2676
XhoI CTCGAG 2 cut(s) 559, 2251
XmiI GTMKAC 3 cut(s) 633, 2185, 3017
XmnI GAANNNNTTC 1 cut(s) 2196
ZraI GACGTC 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 287
Zsp2I ATGCAT 5 cut(s) 39, 186, 851, 1960, 2014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.