RchiOBHm_Chr5g0037691

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000317
Physical Location & Seq
Forward (+)
32327987 .. 32328967
981 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31639

Sequence Viewer

Length: 870 bp
ATGACTTCTGATATATCTAAAGGGGCCAGTGCCATTCAAGCGGTTTTTGCAATTTTAGATAGGAAAACTGAGATTGATCCGGACAACAAATGGGGACTGGAGATAAAGAGGAGGATGAAGGGGCGTGTCGAGCTCAAAAATGTTTTCTTTGCATATCCAACAAGACCTCAGCAGATGATTCTTAAGGGACTGAGCCTCAGAATTGATGCAGGCAAAACTGTGGCACTAGTTGGGCAGAGTGGTTCAGGAAAATCCACCATTATTGGGCTGATTGAGAGGTTTTATGATCCAATGAAGGGATCAGTATTTATAGATGAGCAGGATATTAAGAACTACAACTTGAGACTGCTGAGGGCACATGTAGCCTTGGTTAGTCAGGAGCCTACTTTGTTTGCTGGAACTATCCGTGAAAATATCGCCTATGGTAAAGAGAATTCAAAGGAATCTGATATAAAGAGGGCTGCAGTTCTGGCCAATGCTCATGAATTTATAAGTGGGATGAATGATGGTTATAACACATACTGTGGAGAGAGAGGAGTTCAGCTATCAGGAGGCCAGAAACAAAGGATTGCACTAGCTCGGGCGATTCTGAAGAATCCATCAATCCTCCTCCTGGACGAGGCCACAAGTGCACTTGACAGCGTGTCAGAAAACGCAGTTCAAGAAGCACTAGAGAAGATGATGGTTAAGAGAACATGTATAGTCATTGCTCACCGGCTATCCACAATACAGAAGGCAAACTCCATTGCTGTGATCAAGAATGGAAAGGTTGCGGAACAAGGTTCACATAACGAACTGATTTCATTAGGGCGCAGCGGAGCATACTACTCGGTGATAAAGCTACAAACTGGTAGCTCACCTCCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

289

Amino Acids

31.65

Weight (kDa)

9.59

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 61 - 210 8.1e-34 ABC transporter
SMC_N PF02463 75 - 253 7.6e-07 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 491, 513
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 3 cut(s) 41, 773, 816
AclWI GGATC 3 cut(s) 71, 281, 307
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 2 cut(s) 433, 485
AcuI CTGAAG 1 cut(s) 611
AfiI CCNNNNNNNGG 4 cut(s) 264, 296, 613, 619
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 2 cut(s) 358, 695
AgsI TTSAA 3 cut(s) 38, 438, 662
AhdI GACNNNNNGTC 1 cut(s) 643
AhlI ACTAGT 1 cut(s) 226
AjnI CCWGG 1 cut(s) 612
AluBI AGCT 5 cut(s) 133, 544, 578, 841, 855
AluI AGCT 5 cut(s) 133, 544, 578, 841, 855
Alw21I GWGCWC 2 cut(s) 135, 634
Alw26I GTCTC 1 cut(s) 337
Alw44I GTGCAC 1 cut(s) 630
AlwI GGATC 3 cut(s) 71, 281, 307
Ama87I CYCGRG 1 cut(s) 579
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 4 cut(s) 24, 471, 553, 621
ApaLI GTGCAC 1 cut(s) 630
ApeKI GCWGC 2 cut(s) 461, 813
ApoI RAATTY 2 cut(s) 433, 485
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 704, 844, 849
AvaI CYCGRG 1 cut(s) 579
BaeGI GKGCMC 2 cut(s) 358, 634
BalI TGGCCA 1 cut(s) 473
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 135, 634
BbvCI CCTCAGC 2 cut(s) 168, 350
BbvI GCAGC 2 cut(s) 448, 825
BccI CCATC 3 cut(s) 500, 607, 676
BcgI CGANNNNNNTGC 2 cut(s) 810, 844
BciT130I CCWGG 1 cut(s) 614
BclI TGATCA 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 337
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 3 cut(s) 227, 575, 671
BfmI CTRYAG 1 cut(s) 462
BfrI CTTAAG 1 cut(s) 182
BisI GCNGC 2 cut(s) 462, 814
BlsI GCNGC 2 cut(s) 463, 815
Bme1390I CCNGG 1 cut(s) 614
BmeRI GACNNNNNGTC 1 cut(s) 643
BmeT110I CYCGRG 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 25, 381
BmrFI CCNGG 1 cut(s) 614
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 2 cut(s) 168, 350
BpuEI CTTGAG 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 366, 863
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 296, 613, 619
Bse118I RCCGGY 1 cut(s) 714
Bse1I ACTGG 3 cut(s) 27, 102, 853
Bse3DI GCAATG 2 cut(s) 705, 744
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 366, 863
BseGI GGATG 2 cut(s) 120, 504
BseLI CCNNNNNNNGG 4 cut(s) 264, 296, 613, 619
BseMI GCAATG 2 cut(s) 705, 744
BseMII CTCAG 5 cut(s) 60, 182, 182, 211, 341
BseNI ACTGG 3 cut(s) 27, 102, 853
BseRI GAGGAG 3 cut(s) 124, 549, 599
BseSI GKGCMC 2 cut(s) 358, 634
BseXI GCAGC 2 cut(s) 448, 825
BshFI GGCC 4 cut(s) 26, 473, 555, 623
BsiHKAI GWGCWC 2 cut(s) 135, 634
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 2 cut(s) 80, 715
BslFI GGGAC 2 cut(s) 108, 201
BslI CCNNNNNNNGG 4 cut(s) 264, 296, 613, 619
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 2 cut(s) 108, 201
BsnI GGCC 4 cut(s) 26, 473, 555, 623
BsoBI CYCGRG 1 cut(s) 579
Bsp1286I GDGCHC 3 cut(s) 135, 358, 634
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 76, 286, 299, 753
BspACI CCGC 3 cut(s) 41, 773, 816
BspANI GGCC 4 cut(s) 26, 473, 555, 623
BspCNI CTCAG 5 cut(s) 61, 181, 183, 210, 342
BspEI TCCGGA 1 cut(s) 79
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 25, 381
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 3 cut(s) 71, 281, 307
BspTI CTTAAG 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 705, 744
BsrFI RCCGGY 1 cut(s) 714
BsrI ACTGG 3 cut(s) 27, 102, 853
BssAI RCCGGY 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 366, 863
BssMI GATC 4 cut(s) 76, 286, 299, 753
BssT1I CCWWGG 2 cut(s) 366, 863
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 2 cut(s) 220, 524
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 5 cut(s) 69, 168, 191, 197, 350
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 2 cut(s) 120, 504
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 4 cut(s) 79, 289, 302, 756
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 4 cut(s) 76, 286, 299, 753
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 130, 362, 470, 629
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 2 cut(s) 362, 699
BstSCI CCNGG 1 cut(s) 612
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 2 cut(s) 358, 634
BstV1I GCAGC 2 cut(s) 448, 825
BsuRI GGCC 4 cut(s) 26, 473, 555, 623
BtsCI GGATG 2 cut(s) 120, 504
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 211
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 813
Cfr10I RCCGGY 1 cut(s) 714
Cfr13I GGNCC 1 cut(s) 24
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 3 cut(s) 359, 482, 696
DdeI CTNAG 5 cut(s) 69, 168, 191, 197, 350
DpnI GATC 4 cut(s) 78, 288, 301, 755
DpnII GATC 4 cut(s) 76, 286, 299, 753
DriI GACNNNNNGTC 1 cut(s) 643
EaeI YGGCCR 1 cut(s) 471
Eam1105I GACNNNNNGTC 1 cut(s) 643
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 366, 863
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 366, 863
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 2 cut(s) 366, 863
FaeI CATG 3 cut(s) 362, 485, 699
FaqI GGGAC 2 cut(s) 108, 201
FatI CATG 3 cut(s) 358, 481, 695
FbaI TGATCA 1 cut(s) 753
Fnu4HI GCNGC 2 cut(s) 462, 814
FokI GGATG 2 cut(s) 127, 511
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 462, 814
FspBI CTAG 3 cut(s) 227, 575, 671
GlaI GCGC 1 cut(s) 812
GluI GCNGC 2 cut(s) 462, 814
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 4 cut(s) 26, 473, 555, 623
HapII CCGG 2 cut(s) 80, 715
HhaI GCGC 1 cut(s) 813
Hin1II CATG 3 cut(s) 362, 485, 699
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HinfI GANTC 4 cut(s) 178, 443, 586, 595
HpaII CCGG 2 cut(s) 80, 715
HphI GGTGA 3 cut(s) 704, 844, 849
Hpy166II GTNNAC 2 cut(s) 632, 785
Hpy188I TCNGA 5 cut(s) 10, 200, 448, 591, 649
Hpy188III TCNNGA 7 cut(s) 80, 246, 377, 482, 549, 662, 757
Hpy8I GTNNAC 2 cut(s) 632, 785
HpyAV CCTTC 3 cut(s) 112, 289, 727
HpyCH4III ACNGT 2 cut(s) 220, 524
HpyCH4V TGCA 6 cut(s) 50, 152, 209, 464, 572, 632
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 130, 362, 470, 629
HpyF3I CTNAG 5 cut(s) 69, 168, 191, 197, 350
Hsp92II CATG 3 cut(s) 362, 485, 699
HspAI GCGC 1 cut(s) 811
Kpn2I TCCGGA 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 753
Kzo9I GATC 4 cut(s) 76, 286, 299, 753
LmnI GCTCC 2 cut(s) 379, 818
Lsp1109I GCAGC 2 cut(s) 448, 825
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 227, 575, 671
MalI GATC 4 cut(s) 78, 288, 301, 755
MboI GATC 4 cut(s) 76, 286, 299, 753
MboII GAAGA 2 cut(s) 604, 688
MhlI GDGCHC 3 cut(s) 135, 358, 634
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 4 cut(s) 51, 201, 433, 485
MluNI TGGCCA 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 182
Mox20I TGGCCA 1 cut(s) 473
MroI TCCGGA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 473
MseI TTAA 3 cut(s) 183, 327, 687
MslI CAYNNNNRTG 1 cut(s) 749
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 816
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 2 cut(s) 80, 715
MspR9I CCNGG 1 cut(s) 614
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 130, 362, 470, 629
NdeII GATC 4 cut(s) 76, 286, 299, 753
NlaIII CATG 3 cut(s) 362, 485, 699
NlaIV GGNNCC 2 cut(s) 25, 381
NspI RCATGY 2 cut(s) 362, 699
PagI TCATGA 1 cut(s) 481
PciI ACATGT 2 cut(s) 358, 695
PfeI GAWTC 4 cut(s) 178, 443, 586, 595
PfoI TCCNGGA 1 cut(s) 612
PkrI GCNGC 2 cut(s) 463, 815
PscI ACATGT 2 cut(s) 358, 695
PsiI TTATAA 2 cut(s) 491, 513
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 2 cut(s) 25, 381
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 749
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 183, 327, 687
SatI GCNGC 2 cut(s) 462, 814
Sau3AI GATC 4 cut(s) 76, 286, 299, 753
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 3 cut(s) 135, 358, 634
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 2 cut(s) 182, 340
SmoI CTYRAG 2 cut(s) 182, 340
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 4 cut(s) 51, 201, 433, 485
SsiI CCGC 3 cut(s) 41, 773, 816
SspMI CTAG 3 cut(s) 227, 575, 671
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 612
StyI CCWWGG 2 cut(s) 366, 863
TaaI ACNGT 2 cut(s) 220, 524
TaqI TCGA 1 cut(s) 129
TasI AATT 4 cut(s) 51, 201, 433, 485
TfiI GAWTC 4 cut(s) 178, 443, 586, 595
Tru1I TTAA 3 cut(s) 183, 327, 687
Tru9I TTAA 3 cut(s) 183, 327, 687
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 461, 813
TspDTI ATGAA 5 cut(s) 131, 308, 498, 515, 792
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 182
VneI GTGCAC 1 cut(s) 630
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 2 cut(s) 433, 485
XceI RCATGY 2 cut(s) 362, 699
XspI CTAG 3 cut(s) 227, 575, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.