Rw2G005480

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000317
Physical Location & Seq
Forward (+)
5163751 .. 5169763
6013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005480.1

Sequence Viewer

Length: 3744 bp
ATGGGTTCTCCGGAGAAGAATGAGAACCATGAGAAAGAAGAGAAGAAGTCCGCAGATTCAGTATTCAAAATTTTTAGATATGCTGATTGGGTTGATGTTGTGCTAATGGTTTTTGGAACCATCGGAGCTATCGGAGATGGCATGTCTACTAACTGTTTGCTGCTCTTTGCCAGCCGTCTTCTGAACAACTTGGGGTACGGTCAGAATCAGACCCAACAGAATAATAATCATGGCAATTGGATGGACGAGGTTGAAAAGTGCAGTTTATACTTTGTATACTTGGGATTAGCAGTAATGCTGGTGGCTTTTTTGGAAGGCTATTGTTGGAGCAAAACCAGTGAGAGGCAGGTGCTGAAGATTCGTTACAAGTACTTGGAAGCTGTTCTTAGACAAGAAGTTGGGTTTTTCGATTCACAAGAAGCAACTACTTCGGAGGTGATCAACAGTATATCAAAAGATACTTCTCATTTACAGGAAGTTCTGAGTGAAAAGGTGCCGATATTTTTTATGCACTCGTCAGTGTTCGTCTCCGGGCTTGCTTTCTCCACCTTCTTGTCTTGGAGACTATCCTTAGTAGCATTTCCAACACTTCTTCTCCTGATCATACCCGGAATGATCTATGGGAAATATCTTCTTTATTTGTCTAAACAGTCATACAAAGAGTATGGAAAAGCAAACACCATTGTAGAGCAAGCTCTGAGCTCCATCAAAACCGTCTATTCGTTCACGGCTGAGAGGACAATTTTGGAGAGGTACTCAGCAGTATTGGAGAGAACAAGAAGGCTGGGGATCAAGCAAGGGATTGCAAAAGGTCTTGCTGTAGGAAGCACAGGGCTGTCTTTTGCAATATGGGCATTTCTGGCTTGGTATGGAAGCCATTTGGTGATGTATAGAGGTGAAAGTGGTGGCAGGATCTATGCTGCTGGCATCTCCTTCGTACTGAGTGGACTATCCTTGGGAATGGCACTTCCAGATTTGAGGCACTTTACAGAAGCTTCCATTGCTGCATCACGCATATTCGATAGGATTGACCGAAAACCATTGATTGATGGTGAAGACATAAAAGGACTTGTCTTGGACAACATTAGAGGCGAAGTAGAATTCATAGATGTCAGATTCACATACCCTTCTCGTCCGGATTCCATTGTCCTCAAAGACTTCAATCTCAAAGTTGAAGCAGGGAAGACAATTGCACTTGTTGGTGCCAGCGGAAGTGGCAAATCCACAGCAATTGCATTGGTGCAACGCTTTTATGATGCAGATGGGGGAGTTGTTCGAATTGATGGTGTTGATATAAAGACACTTCAATTGAAGTGGATAAGATCGCAAATGGGACTTGTTAGTCAAGAACATGCTTTGTTTGGTACATCAATAAAGGAAAATATCATGTTTGGGAAACTTGATGCCAATATGGATGAAGTCACAGCTGCTGCTATGGCTGCCAATGCTCACAATTTCATAAGGCAGCTTCCTGAAGGGTATGAGACCAAGATTGGAGAGCGAGGAGCACTTTTATCGGGGGGACAAAAGCAGCGGATAGCCATTGCTAGAGCAATTATCAAGAATCCTATAATTCTCTTACTTGATGAAGCAACAAGTGCTCTTGACTCAGAGTCAGAGACACTGGTCCAAAATGCTCTTGACCAAGCCTCCATGGGAAGAACCACATTGGTGGTAGCTCACAAGCTTTCTACAGTTCGAAATGCAGACCTCATTGCGGTGGTCAGTGGGGGTTGCATCATCGAAATAGGCTCACACAACGACCTCATCAACCGTCAAAATGGGCAGTATGCAAAGCTAGCAAAGATGCAGAGACAGTTCAGCACCTTTGACAATGTAGACCAAGACCAAAATTCAGATACGCGCTTGTCTTCGGTTGCAAGAAGCAGTGCTGGCAGGTTAAGCACCGCAAGATCAAGCCCTGCTATGTTTGCAAAATCACCACTAGCTATTGAGACCCCAGAATCTGTAGTGTCTCATCCCCCAACCTCCTTCTACCGCCTTCTCTCTTTAAACTCCCCTGAATGGAAGCAAGGCCTAATTGGAAGCCTCTCAGCGATAGCCTTTGGCTCAGTCCAACCTATCTATGCCCTCACCGTGGGTGGTATGATATCAGCTTTCTTTGTGCAAAGCCATGAGGAAATGCGTGCACGAATTCGAACATATTCATTGATTTTCTCTGCACTTTCCTTAATCTCCATGACATTGAATCTTTTGCAACATTATAATTTTGCTTATATGGGTGAGCAGCTCACGAAAAGAATCCGATTGAAAATGCTCCAAAAGATCTTGACCTTTGAGACAGCTTGGTTTGATGAGGAGCACAACACAAGTGGGGTATTGTGTTCAAGATTGAGCAATGAGGCTTCCATGGTGAAGTCCCTTGTGGCAGACAGGGTCTCTTTATTAGTCCAAACCACTTCAGCCGTCACAATTGCTATGATGTTGGGACTAATAGTTGCTTGGAAGCTAGCACTTGTTATGATTGCGGTCCAACCACTCGCGATTCTTTGCTTCTACACCAAGAAAGTGTTGCTCTCTAGCCTTTCAGCCAATTTTGTCAAGGCGCAAAACCATAGCACCCAAATTGCAGTTGAAGCAGTTTATAACCATAGAATTGTAACTTCATTTGCAAGTGTAGGGAAAGTGCTCCAAATATTCGACAAAGCTCAGGAGGCACCAAGAAAAGAGGCAAGGAAGAAGTCATGGCTGGCTGGCATTGGAATGGGGTCAGCTCAGTGCCTAACATTTATGTCATGGGCATTGGACTTTTGGTATGGTGGTAAACTAGTCGAAAATGGACAAATATCAGCTGGGGATGTGTTCAAAACATTTTTCATATTGGTTAGTACTGGTAAGGTTATAGCAGAAGCTGGGAGCATGACTTCTGATTTAGCCAAGGGTGCTACTGCAGTTGCATCTGTGTTTGACATTCTTGACAGGCACTCACTGATTCCAGGGTCACAGAATGTTGGGGATGATGATAGTACTAGTGGAATCAAGTTAGAAAAAGTAACAGGGAGGATAGATATGAAGAAAGTTGACTTTGCATACCCAAGCAGGCCGGAGACCCTAGTGTTGCGCCAATTTAGCTTGGAGGTCAAGACAGGCACAAGCATTGGACTAGTTGGGAAAAGTGGGTGTGGTAAATCAACTGTGATTGGACTGATACAAAGGTTTTATGATGTTGAGAGGGGGTCAGTGAAGGTAGATGGAGTTGATATAAGGGAGCTAGATGTTCAATGGTATAGGAAGCACACTGGCCTTGTTAGCCAAGAGCCGGTGATATATTCAGGCACCATCCGCGACAACATCATGTTCGGAAAGCTTGATGCTTCGGAAAATGAAGTCGTAGAGGCTGCCAGAGCTGCTAATGCTCACGAATTCATCTCAGCCTTGAAAGACGGCTATGAGACAGAATGTGGTGAAAGAGGAGTGCAGCTCTCAGGAGGGCAGAAGCAAAGAATAGCAATAGCAAGAGCAATACTTAGGAACCCTATAATACTATTGCTAGATGAGGCAACAAGCGCTCTTGATGTGCAATCGGAGCACCTTGTGCAGGAAGCATTGGACCGAATCATGGTTGGAAGGACCACAATTGTGATAGCACATCGACTTAACACCATAAAAAACCTTGAGATGATTGCAGTTGTCGAAGATGGGAAGGTTGTAGAGAAAGGCACTTATGCTCAGCTCAAGCACAAGCGTGGTGCCTTCTTCGACCTTGCTAGCTGTCAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1247

Amino Acids

137.18

Weight (kDa)

8.61

Isoelectric Point (pI)

28.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 56 - 299 4.7e-47 ABC transporter transmembrane region
ABC_tran PF00005 384 - 533 1.6e-30 ABC transporter
ABC_membrane PF00664 683 - 950 1.4e-45 ABC transporter transmembrane region
ABC_tran PF00005 1027 - 1176 6.6e-30 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2226, 2607
AarI CACCTGC 1 cut(s) 337
AasI GACNNNNNNGTC 1 cut(s) 1341
Acc36I ACCTGC 2 cut(s) 337, 1887
AccB1I GGYRCC 5 cut(s) 493, 1202, 2677, 3296, 3710
AccI GTMKAC 3 cut(s) 146, 276, 1839
AccII CGCG 3 cut(s) 1864, 2504, 3306
AccIII TCCGGA 2 cut(s) 10, 1135
AciI CCGC 8 cut(s) 51, 1209, 1534, 1718, 1908, 1999, 2489, 3304
AclWI GGATC 2 cut(s) 797, 920
AcsI RAATTY 5 cut(s) 69, 1100, 1852, 2154, 3383
AcuI CTGAAG 3 cut(s) 374, 1494, 2406
AdeI CACNNNGTG 1 cut(s) 3556
AfaI GTAC 7 cut(s) 197, 371, 755, 939, 1366, 2851, 2989
AfeI AGCGCT 1 cut(s) 3529
AfiI CCNNNNNNNGG 7 cut(s) 342, 1717, 2025, 2098, 3280, 3559, 3580
AhdI GACNNNNNGTC 1 cut(s) 1612
AhlI ACTAGT 3 cut(s) 2788, 2990, 3124
AjnI CCWGG 1 cut(s) 2956
AleI CACNNNNGTG 3 cut(s) 1670, 3599, 3705
Alw21I GWGCWC 7 cut(s) 704, 1510, 1603, 2152, 2325, 2652, 3552
Alw44I GTGCAC 1 cut(s) 2148
AlwI GGATC 2 cut(s) 797, 920
AlwNI CAGNNNCTG 4 cut(s) 352, 1430, 1967, 2873
Aor13HI TCCGGA 2 cut(s) 10, 1135
Aor51HI AGCGCT 1 cut(s) 3529
AoxI GGCC 3 cut(s) 2035, 3062, 3262
ApaLI GTGCAC 1 cut(s) 2148
ApoI RAATTY 5 cut(s) 69, 1100, 1852, 2154, 3383
Asp700I GAANNNNTTC 2 cut(s) 381, 2164
AspLEI GCGC 4 cut(s) 1866, 2569, 3084, 3530
AspS9I GGNCC 4 cut(s) 1627, 2491, 3571, 3591
AsuC2I CCSGG 2 cut(s) 532, 609
AsuII TTCGAA 3 cut(s) 1276, 1699, 2158
AsuNHI GCTAGC 3 cut(s) 1798, 2470, 3728
AvaII GGWCC 4 cut(s) 1627, 2491, 3571, 3591
BaeGI GKGCMC 1 cut(s) 2152
BaeI ACNNNNGTAYC 2 cut(s) 3161, 3194
BanI GGYRCC 5 cut(s) 493, 1202, 2677, 3296, 3710
BanII GRGCYC 1 cut(s) 704
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbsI GAAGAC 4 cut(s) 170, 1062, 1190, 1863
Bbv12I GWGCWC 7 cut(s) 704, 1510, 1603, 2152, 2325, 2652, 3552
BceAI ACGGC 4 cut(s) 159, 744, 2411, 3421
BcgI CGANNNNNNTGC 6 cut(s) 411, 445, 916, 950, 1497, 1531
BciT130I CCWGG 1 cut(s) 2958
BclI TGATCA 2 cut(s) 438, 600
BcnI CCSGG 2 cut(s) 532, 609
BcuI ACTAGT 3 cut(s) 2788, 2990, 3124
BfmI CTRYAG 4 cut(s) 819, 1692, 1968, 2910
BfoI RGCGCY 1 cut(s) 3531
BfuAI ACCTGC 2 cut(s) 337, 1887
BglII AGATCT 1 cut(s) 2286
BlpI GCTNAGC 1 cut(s) 3690
BmcAI AGTACT 3 cut(s) 371, 2851, 2989
Bme1390I CCNGG 3 cut(s) 532, 609, 2958
Bme18I GGWCC 4 cut(s) 1627, 2491, 3571, 3591
BmeRI GACNNNNNGTC 1 cut(s) 1612
BmgT120I GGNCC 4 cut(s) 1627, 2491, 3571, 3591
BmiI GGNNCC 7 cut(s) 118, 495, 1204, 2679, 3298, 3494, 3712
BmrFI CCNGG 3 cut(s) 532, 609, 2958
BmsI GCATC 8 cut(s) 936, 1016, 1246, 1393, 1746, 1797, 2927, 3322
BmtI GCTAGC 3 cut(s) 1802, 2474, 3732
BoxI GACNNNNGTC 1 cut(s) 1625
BpiI GAAGAC 4 cut(s) 170, 1062, 1190, 1863
BplI GAGNNNNNCTC 4 cut(s) 740, 772, 3426, 3458
Bpu10I CCTNAGC 1 cut(s) 2670
Bpu1102I GCTNAGC 1 cut(s) 3690
Bpu14I TTCGAA 3 cut(s) 1276, 1699, 2158
BpuEI CTTGAG 2 cut(s) 3656, 3680
BpuMI CCSGG 2 cut(s) 532, 609
BsaI GGTCTC 4 cut(s) 1478, 1949, 2404, 3062
BsaJI CCNNGG 6 cut(s) 954, 1653, 2097, 2370, 2898, 2957
BsaWI WCCGGW 2 cut(s) 10, 1135
BsaXI ACNNNNNCTCC 4 cut(s) 579, 609, 1634, 1664
Bsc4I CCNNNNNNNGG 7 cut(s) 342, 1717, 2025, 2098, 3280, 3559, 3580
Bse118I RCCGGY 1 cut(s) 3280
Bse1I ACTGG 4 cut(s) 336, 1629, 2857, 3265
Bse3DI GCAATG 4 cut(s) 999, 1542, 1713, 2365
BseAI TCCGGA 2 cut(s) 10, 1135
BseBI CCWGG 1 cut(s) 2958
BseDI CCNNGG 6 cut(s) 954, 1653, 2097, 2370, 2898, 2957
BseGI GGATG 6 cut(s) 246, 1420, 1978, 2824, 2983, 3300
BseLI CCNNNNNNNGG 7 cut(s) 342, 1717, 2025, 2098, 3280, 3559, 3580
BseMI GCAATG 4 cut(s) 999, 1542, 1713, 2365
BseNI ACTGG 4 cut(s) 336, 1629, 2857, 3265
BseRI GAGGAG 3 cut(s) 1518, 2333, 3447
BseSI GKGCMC 1 cut(s) 2152
BseYI CCCAGC 3 cut(s) 784, 2813, 2873
BsgI GTGCAG 4 cut(s) 280, 2166, 3458, 3578
Bsh1236I CGCG 3 cut(s) 1864, 2504, 3306
BshFI GGCC 3 cut(s) 2037, 3064, 3264
BshNI GGYRCC 5 cut(s) 493, 1202, 2677, 3296, 3710
BsiHKAI GWGCWC 7 cut(s) 704, 1510, 1603, 2152, 2325, 2652, 3552
BsiSI CCGG 6 cut(s) 11, 531, 609, 1136, 3065, 3281
BslFI GGGAC 4 cut(s) 1347, 1536, 2365, 2463
BslI CCNNNNNNNGG 7 cut(s) 342, 1717, 2025, 2098, 3280, 3559, 3580
BsmBI CGTCTC 1 cut(s) 532
BsmFI GGGAC 4 cut(s) 1347, 1536, 2365, 2463
BsnI GGCC 3 cut(s) 2037, 3064, 3264
Bso31I GGTCTC 4 cut(s) 1478, 1949, 2404, 3062
Bsp119I TTCGAA 3 cut(s) 1276, 1699, 2158
Bsp1286I GDGCHC 7 cut(s) 704, 1510, 1603, 2152, 2325, 2652, 3552
Bsp13I TCCGGA 2 cut(s) 10, 1135
Bsp143I GATC 8 cut(s) 438, 600, 615, 789, 912, 1322, 1913, 2286
Bsp1720I GCTNAGC 1 cut(s) 3690
Bsp19I CCATGG 2 cut(s) 1653, 2370
Bsp68I TCGCGA 1 cut(s) 2504
BspACI CCGC 8 cut(s) 51, 1209, 1534, 1718, 1908, 1999, 2489, 3304
BspANI GGCC 3 cut(s) 2037, 3064, 3264
BspEI TCCGGA 2 cut(s) 10, 1135
BspFNI CGCG 3 cut(s) 1864, 2504, 3306
BspLI GGNNCC 7 cut(s) 118, 495, 1204, 2679, 3298, 3494, 3712
BspMAI CTGCAG 1 cut(s) 2914
BspMI ACCTGC 2 cut(s) 337, 1887
BspOI GCTAGC 3 cut(s) 1802, 2474, 3732
BspPI GGATC 2 cut(s) 797, 920
BspT104I TTCGAA 3 cut(s) 1276, 1699, 2158
BspT107I GGYRCC 5 cut(s) 493, 1202, 2677, 3296, 3710
BspTNI GGTCTC 4 cut(s) 1478, 1949, 2404, 3062
BsrDI GCAATG 4 cut(s) 999, 1542, 1713, 2365
BsrFI RCCGGY 1 cut(s) 3280
BsrI ACTGG 4 cut(s) 336, 1629, 2857, 3265
BssAI RCCGGY 1 cut(s) 3280
BssECI CCNNGG 6 cut(s) 954, 1653, 2097, 2370, 2898, 2957
BssMI GATC 8 cut(s) 438, 600, 615, 789, 912, 1322, 1913, 2286
BssNAI GTATAC 1 cut(s) 277
BssT1I CCWWGG 4 cut(s) 954, 1653, 2370, 2898
Bst1107I GTATAC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 2958
Bst6I CTCTTC 1 cut(s) 33
BstAPI GCANNNNNTGC 2 cut(s) 1598, 3556
BstBI TTCGAA 3 cut(s) 1276, 1699, 2158
BstDSI CCRYGG 3 cut(s) 1653, 2097, 2370
BstENI CCTNNNNNAGG 1 cut(s) 3557
BstF5I GGATG 6 cut(s) 246, 1420, 1978, 2824, 2983, 3300
BstFNI CGCG 3 cut(s) 1864, 2504, 3306
BstH2I RGCGCY 1 cut(s) 3531
BstHHI GCGC 4 cut(s) 1866, 2569, 3084, 3530
BstKTI GATC 8 cut(s) 441, 603, 618, 792, 915, 1325, 1916, 2289
BstMBI GATC 8 cut(s) 438, 600, 615, 789, 912, 1322, 1913, 2286
BstNI CCWGG 1 cut(s) 2958
BstNSI RCATGY 2 cut(s) 145, 1355
BstPAI GACNNNNGTC 1 cut(s) 1625
BstSCI CCNGG 3 cut(s) 530, 607, 2956
BstSFI CTRYAG 4 cut(s) 819, 1692, 1968, 2910
BstSLI GKGCMC 1 cut(s) 2152
BstUI CGCG 3 cut(s) 1864, 2504, 3306
BstV2I GAAGAC 4 cut(s) 170, 1062, 1190, 1863
BstX2I RGATCY 2 cut(s) 912, 2286
BstXI CCANNNNNNTGG 1 cut(s) 1672
BstYI RGATCY 2 cut(s) 912, 2286
BstZ17I GTATAC 1 cut(s) 277
BsuRI GGCC 3 cut(s) 2037, 3064, 3264
BtgI CCRYGG 3 cut(s) 1653, 2097, 2370
BtsCI GGATG 6 cut(s) 246, 1420, 1978, 2824, 2983, 3300
BtsI GCAGTG 1 cut(s) 1894
BtsIMutI CAGTG 9 cut(s) 343, 525, 1622, 1732, 1894, 2744, 2948, 3207, 3258
BtuMI TCGCGA 1 cut(s) 2504
BveI ACCTGC 2 cut(s) 337, 1887
CaiI CAGNNNCTG 4 cut(s) 352, 1430, 1967, 2873
CfoI GCGC 4 cut(s) 1866, 2569, 3084, 3530
Cfr10I RCCGGY 1 cut(s) 3280
Cfr13I GGNCC 4 cut(s) 1627, 2491, 3571, 3591
Csp6I GTAC 7 cut(s) 196, 370, 754, 938, 1365, 2850, 2988
CspCI CAANNNNNGTGG 6 cut(s) 1213, 1248, 1295, 1330, 2314, 2349
CviQI GTAC 7 cut(s) 196, 370, 754, 938, 1365, 2850, 2988
DpnI GATC 8 cut(s) 440, 602, 617, 791, 914, 1324, 1915, 2288
DpnII GATC 8 cut(s) 438, 600, 615, 789, 912, 1322, 1913, 2286
DraI TTTAAA 1 cut(s) 2013
DraIII CACNNNGTG 1 cut(s) 3556
DrdI GACNNNNNNGTC 1 cut(s) 1341
DriI GACNNNNNGTC 1 cut(s) 1612
DseDI GACNNNNNNGTC 1 cut(s) 1341
Eam1104I CTCTTC 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 1612
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 702
Eco130I CCWWGG 4 cut(s) 954, 1653, 2370, 2898
Eco147I AGGCCT 1 cut(s) 2037
Eco24I GRGCYC 1 cut(s) 704
Eco31I GGTCTC 4 cut(s) 1478, 1949, 2404, 3062
Eco32I GATATC 1 cut(s) 2112
Eco47I GGWCC 4 cut(s) 1627, 2491, 3571, 3591
Eco47III AGCGCT 1 cut(s) 3529
Eco53kI GAGCTC 1 cut(s) 702
Eco57I CTGAAG 3 cut(s) 374, 1494, 2406
EcoICRI GAGCTC 1 cut(s) 702
EcoNI CCTNNNNNAGG 1 cut(s) 3557
EcoRI GAATTC 3 cut(s) 1100, 2154, 3383
EcoRII CCWGG 1 cut(s) 2956
EcoRV GATATC 1 cut(s) 2112
EcoT14I CCWWGG 4 cut(s) 954, 1653, 2370, 2898
EcoT38I GRGCYC 1 cut(s) 704
ErhI CCWWGG 4 cut(s) 954, 1653, 2370, 2898
Esp3I CGTCTC 1 cut(s) 532
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 4 cut(s) 1347, 1536, 2365, 2463
FbaI TGATCA 2 cut(s) 438, 600
FblI GTMKAC 3 cut(s) 146, 276, 1839
FokI GGATG 6 cut(s) 253, 1427, 1965, 2831, 2990, 3287
FriOI GRGCYC 1 cut(s) 704
GlaI GCGC 4 cut(s) 1865, 2568, 3083, 3529
GsaI CCCAGC 3 cut(s) 788, 2817, 2877
HaeII RGCGCY 1 cut(s) 3531
HaeIII GGCC 3 cut(s) 2037, 3064, 3264
HapII CCGG 6 cut(s) 11, 531, 609, 1136, 3065, 3281
HhaI GCGC 4 cut(s) 1866, 2569, 3084, 3530
Hin6I GCGC 4 cut(s) 1864, 2567, 3082, 3528
HinP1I GCGC 4 cut(s) 1864, 2567, 3082, 3528
HincII GTYRAC 1 cut(s) 3043
HindII GTYRAC 1 cut(s) 3043
HindIII AAGCTT 3 cut(s) 993, 1685, 3326
HpaII CCGG 6 cut(s) 11, 531, 609, 1136, 3065, 3281
Hpy166II GTNNAC 8 cut(s) 147, 277, 726, 947, 1840, 2150, 2786, 3043
Hpy8I GTNNAC 8 cut(s) 147, 277, 726, 947, 1840, 2150, 2786, 3043
HspAI GCGC 4 cut(s) 1864, 2567, 3082, 3528
Kpn2I TCCGGA 2 cut(s) 10, 1135
Ksp22I TGATCA 2 cut(s) 438, 600
Kzo9I GATC 8 cut(s) 438, 600, 615, 789, 912, 1322, 1913, 2286
LweI GCATC 8 cut(s) 936, 1016, 1246, 1393, 1746, 1797, 2927, 3322
MaeIII GTNAC 6 cut(s) 362, 1420, 2428, 2620, 2961, 3013
MalI GATC 8 cut(s) 440, 602, 617, 791, 914, 1324, 1915, 2288
MboI GATC 8 cut(s) 438, 600, 615, 789, 912, 1322, 1913, 2286
MfeI CAATTG 6 cut(s) 235, 1188, 1230, 1307, 2433, 3597
MflI RGATCY 2 cut(s) 912, 2286
MhlI GDGCHC 7 cut(s) 704, 1510, 1603, 2152, 2325, 2652, 3552
MlyI GAGTC 2 cut(s) 1601, 1622
MmeI TCCRAC 5 cut(s) 305, 608, 2101, 2518, 3565
MroI TCCGGA 2 cut(s) 10, 1135
MroXI GAANNNNTTC 2 cut(s) 381, 2164
MseI TTAA 5 cut(s) 1901, 2012, 2192, 3618, 3742
MslI CAYNNNNRTG 5 cut(s) 1670, 1718, 2723, 3599, 3705
MspA1I CMGCKG 4 cut(s) 1209, 1427, 1534, 2813
MspI CCGG 6 cut(s) 11, 531, 609, 1136, 3065, 3281
MspR9I CCNGG 3 cut(s) 532, 609, 2958
MunI CAATTG 6 cut(s) 235, 1188, 1230, 1307, 2433, 3597
MvaI CCWGG 1 cut(s) 2958
MvnI CGCG 3 cut(s) 1864, 2504, 3306
NciI CCSGG 2 cut(s) 532, 609
NcoI CCATGG 2 cut(s) 1653, 2370
NdeII GATC 8 cut(s) 438, 600, 615, 789, 912, 1322, 1913, 2286
NheI GCTAGC 3 cut(s) 1798, 2470, 3728
NlaIV GGNNCC 7 cut(s) 118, 495, 1204, 2679, 3298, 3494, 3712
NmuCI GTSAC 3 cut(s) 1420, 2428, 2961
NruI TCGCGA 1 cut(s) 2504
NspI RCATGY 2 cut(s) 145, 1355
NspV TTCGAA 3 cut(s) 1276, 1699, 2158
OliI CACNNNNGTG 3 cut(s) 1670, 3599, 3705
PaqCI CACCTGC 1 cut(s) 337
PceI AGGCCT 1 cut(s) 2037
PdmI GAANNNNTTC 2 cut(s) 381, 2164
PflFI GACNNNGTC 1 cut(s) 2396
PleI GAGTC 2 cut(s) 1601, 1621
PpsI GAGTC 2 cut(s) 1601, 1621
PshAI GACNNNNGTC 1 cut(s) 1625
PsiI TTATAA 2 cut(s) 2226, 2607
Psp124BI GAGCTC 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 2956
PspFI CCCAGC 3 cut(s) 784, 2813, 2873
PspGI CCWGG 1 cut(s) 2956
PspN4I GGNNCC 7 cut(s) 118, 495, 1204, 2679, 3298, 3494, 3712
PspPI GGNCC 4 cut(s) 1627, 2491, 3571, 3591
PstI CTGCAG 1 cut(s) 2914
PstNI CAGNNNCTG 4 cut(s) 352, 1430, 1967, 2873
PsuI RGATCY 2 cut(s) 912, 2286
PsyI GACNNNGTC 1 cut(s) 2396
PvuII CAGCTG 2 cut(s) 1427, 2813
RruI TCGCGA 1 cut(s) 2504
RsaI GTAC 7 cut(s) 197, 371, 755, 939, 1366, 2851, 2989
RsaNI GTAC 7 cut(s) 196, 370, 754, 938, 1365, 2850, 2988
RseI CAYNNNNRTG 5 cut(s) 1670, 1718, 2723, 3599, 3705
SacI GAGCTC 1 cut(s) 704
SaqAI TTAA 5 cut(s) 1901, 2012, 2192, 3618, 3742
Sau3AI GATC 8 cut(s) 438, 600, 615, 789, 912, 1322, 1913, 2286
Sau96I GGNCC 4 cut(s) 1627, 2491, 3571, 3591
ScaI AGTACT 3 cut(s) 371, 2851, 2989
SchI GAGTC 2 cut(s) 1601, 1622
ScrFI CCNGG 3 cut(s) 532, 609, 2958
SduI GDGCHC 7 cut(s) 704, 1510, 1603, 2152, 2325, 2652, 3552
SfaNI GCATC 8 cut(s) 936, 1016, 1246, 1393, 1746, 1797, 2927, 3322
SfcI CTRYAG 4 cut(s) 819, 1692, 1968, 2910
SfuI TTCGAA 3 cut(s) 1276, 1699, 2158
SinI GGWCC 4 cut(s) 1627, 2491, 3571, 3591
SmiMI CAYNNNNRTG 5 cut(s) 1670, 1718, 2723, 3599, 3705
SmlI CTYRAG 2 cut(s) 3635, 3695
SmoI CTYRAG 2 cut(s) 3635, 3695
SpeI ACTAGT 3 cut(s) 2788, 2990, 3124
SseBI AGGCCT 1 cut(s) 2037
SsiI CCGC 8 cut(s) 51, 1209, 1534, 1718, 1908, 1999, 2489, 3304
SspI AATATT 1 cut(s) 2658
SstI GAGCTC 1 cut(s) 704
StuI AGGCCT 1 cut(s) 2037
StyD4I CCNGG 3 cut(s) 530, 607, 2956
StyI CCWWGG 4 cut(s) 954, 1653, 2370, 2898
TaqII GACCGA 2 cut(s) 1047, 3588
TatI WGTACW 3 cut(s) 369, 2849, 2987
Tru1I TTAA 5 cut(s) 1901, 2012, 2192, 3618, 3742
Tru9I TTAA 5 cut(s) 1901, 2012, 2192, 3618, 3742
TscAI CASTG 9 cut(s) 343, 525, 1629, 1732, 1894, 2744, 2955, 3207, 3265
TseFI GTSAC 3 cut(s) 1420, 2428, 2961
Tsp45I GTSAC 3 cut(s) 1420, 2428, 2961
TspRI CASTG 9 cut(s) 343, 525, 1629, 1732, 1894, 2744, 2955, 3207, 3265
Tth111I GACNNNGTC 1 cut(s) 2396
VneI GTGCAC 1 cut(s) 2148
VpaK11BI GGWCC 4 cut(s) 1627, 2491, 3571, 3591
XagI CCTNNNNNAGG 1 cut(s) 3557
XapI RAATTY 5 cut(s) 69, 1100, 1852, 2154, 3383
XceI RCATGY 2 cut(s) 145, 1355
XmiI GTMKAC 3 cut(s) 146, 276, 1839
XmnI GAANNNNTTC 2 cut(s) 381, 2164
ZrmI AGTACT 3 cut(s) 371, 2851, 2989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.