Rroxscaffold_1G00043250

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000317
Physical Location & Seq
Reverse (-)
61572610 .. 61577527
4918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043250.1

Sequence Viewer

Length: 3807 bp
ATGGGGCTCAAAAATAGCATGTTTCGCTATGCAGACGGCACAGACAAGTTGCTGATGTTTTTTGGGACTCTAGGCAGCATTGGTGATGGGTTGCAGAACCCTCTCATGATGTTTATTCTTAGTGAGGTGATCAACTCATATGGAAGTTCCAGTGGCGCTTTGACTAATGCTGATGTAGACAAGTTTGCACTCAGGCTATTCTATGTTGCTATTGGAGTTGGACTTGCTGCATTTGTTGAAGGGTTATGTTGGACAAGAACCGCAGAGAGGCAGACTTCGAGAATGAGAATGAAGTATCTTAATTCTGTTCTCAAACAAGAAGTTTCCTTCTTTGACACCCAGACTGCTGGTTCTTCAACAACCTTCCAAGTTATTTCAATCATCTCCTCCGATGCCAATGCAGTCCAAGTTTCTTTATGCGAGAAGATACCTGACTGCATAGCATACATGTCAACTTTCTTCTTCTGCCATATATTTGCCTTCACACTTTCATGGAGGTTGGCCTTGGCTGCGATGCCACTTTCAATCTCGTTCATAGCTCCAGGGCTTTTCTTTGGAAGTATCTTGATGGGCCTTGTAATGAAGGGGATTGGGGCTTATGGAGTTGCCGGAGGGATTGCTGAACAAGCAATTTCTTCAGTCAGAACTGTATATTCATATGTTGGGGAGAACCAAACACTAAAGAGGTTCAGCATTGCACTTCAGACTGTTACGAAAATTGGAATCAAGGTGGGTCTTGTGAAAGGAATCCTGATGGGAAGCATGGGAATCATTTACGTCGGTTGGGGTTTTCAGGCATGGGTTGGGACTTATTTGGTTACTCAAAAAGGAGAAGATGGAGGGCATGTCTTCATAGCCGGTTTCAATGTCCTCATGGGAGGCCTGAGTATTTTAAGTGCACTTCCAAATTTAACTGCCATCACAGAGGCATTAGCTGCTACAACACGAATTCTTGAAATGATTGACCGTGTTCCTAGTATGGAAACTGAAGACAGAAAGGGGAAGGCTTTGTCACATGTGAGAGGAGAAATAGAGTTCCAAGACATATACTTCAGTTACCCATCAAGACCTGACAGCCAAGTCTTACAAGGTTTGAATCTTAAGATTCCGGCTGGTAAGAGTGTAGGTCTAGTTGGGGGAAGTGGCTCTGGCAAGTCGACAATCATTTCATTGATCGAAAGATTTTATGACCCGGTTGAAGGAGAAATACTCTTGGATGGACATGCAATCAGAAGACTTCAACCGAAATGGTTGAGATCCCAAATGGGTTTAGTTAATCAGGAACCTGTTCTGTTTGCAACTTCCATAAGAGAGAACATACTTTTCGGAAAGGAAGGAGCTTCAATGGATGAAATAACAAATGCAGCTAAAGCTGCAAATGCACATGACTTCATTGTCAAGTTACCTGATGGATATGAAACTCAAGCTGGTCAATTTGGATTCCAACTGTCTGGTGGGCAAAAGCAGCGAATAGCCATAGCGAGAGCTCTGCTCAGGAATCCGAAAATCTTACTTCTTGATGAAGCAACTAGTGCATTGGATGCACAGTCTGAAAGAGTAGTTCAGGAGGCAATTGATCAAGCATCAAAAGGGAGGACAACAATCATTATTGCCCATCGCCTGTCAACAATCCGAACAGCAAACTTGATTGTGGTTCTTCAATCTGGGAAAGTAATTGAATCAGGCTCGCACAATGAGCTAATGAGAAAGAATGGGGAGCAGAGAGGTGAATACTTAAAGATGGTCCAGTTGCAGCAGATGGCAACCCAAAATGAAGATCCAGAGGATAGTCAAGTATATGAAAAACCTCGGCGTAGGAGGAGCGTTGCACCAAGCCCCATTAGTGCCCGGTCCAGTACTCATAACACTCCAATATACTCCTTCAGTGGTACTGGAATGTCCATCTCTATGGGCTCCCCCATGTCCATGGGGACACCCCAGTCCACCATGGGCACACCCTATTCGTTCTCTGTCCAATACGATCCTGATGATGGGAGTTATGATGAAGACTTAAAGAAATCAACTTATCCTCCTCCTTCTCAATGGCGCCTGCTGAAGATGAATGCACCAGAGTGGGGACAAGCATTGCTTGGATGCTTGGGTGCAATAGGTTCTGGGGCAGTACAACCTATTAATGCCTTCTGTGTAGGCTCACTTATATCAGTCTACTTCCTCCAGGATAAATCAGAAATCAAGTCCCAATCAAGAGTCTTGACCTTTGTTTTCATAGGCATTGGTGTTTTCAACTTCTTCACCAATCTCATCCAACACTATAACTTTGCAATTATGGGAGAAAAGTTGACCACAAGGGTAAGAGAGCAACTGCTTGAAAAGCTTATGACGTTCGAAATTGGATGGTTTGATGAAGATGAGAACACAAGTGCAGCTATCTGTGCAAGGCTAGCCACTGAAGTAAACATGGTTCGATCTCTTGTTGGTGACAGAATGTCATTGCTGGTCCAAGCAGTTTTCGGGGCTACCTTTGCTTACACAGTAGGACTTGTGCTGACATGGAGACTATCCCTTGTGATGATAGCAGTGCAGCCACTAGTCATTGGGAGCTTTTATGCAAGGAGTATCTTGATGAAGAGTATGGGTGAGAAGGCAAGAAAAGCTCAAAAAGAAGGAAGCCAATTGGCAAGTGAAGCTGTTATTAACCACAGAACTATAACAGCCTTCTCTTCACAGAAAAAGATTCTGGGGCTGTTTGGTGCAACCTTGGCTGGTCCTAAGAAGGAGAGTATCAAGCAATCCTATGTTTCTGGTGCTGGCTTGTTTAGCTCCCAGTTCTTTAACACGGCGGCTACAGCTTTAGCCTACTGGTATGGTGGGAGGCTACTGGTGCTAGAGTTGATAACCCCAAAGCATCTTTTTCAGGCCTTCTTGATATTGCTGTTCACTGCTTATATCATTGCAGAAGCTGGAAGCATGACTTCTGACATATCTAAAGGGGCCAGTGCCATTCAAGCGGTTTTTGCAATTTTAGATAGGAAAACCAAGATTGATCCTGACAACAAATGGGGACTGGAGATAAAGAGGAGGATAAAGGGGCGTGTCGAGTTCAAAAATGTTTTCTTTGCATATCCAACAAGACCTGAGCAGATGATTCTTAAGGGACTGAGCCTCAGGATTGATGCAGGCAAAACAGTGGCACTAGTTGGGCAGAGTGGTTCAGGCAAATCCACCATTATTGGGCTAATTGAGAGGTTTTATGATCCAATGAAGGGATCGGTATTTATAGATGAGCAGGATCTTAAGAACTACAACTTGAGACTGCTGAGGGCACATGTAGCCTTGGTTAGTCAGGAGCCTACTTTGTTTGCTGGAACTATCCGTGAAAATATCGCCTATGGTAAAGAGAATTCAAAGGAATCTGATATAAAGAGGGCTGCAGTTCTGGCCAATGCTCATGAATTTATAAGTGGGATGAATGATGGTTATAACACATACTGTGGAGAGAGAGGAGTTCAGCTATCAGGAGGCCAGAAACAAAGGATTGCACTAGCTCGGGCGATTCTGAAAAATCCATCAATCCTCCTCCTGGATGAGGCCACAAGTGCACTTGACAGCGTGTCAGAAAACGCAGTTCAGGAAGCACTAGAGAAGATGATGGTTAACAGAACATGTATAGTCATTGCTCACCGGCTATCCACAGTACAGAAGGCCAACTCCATTGCTGTGATCAAGAATGGAAAGGTTGCGGAACAAGGTCCACATAACGAACTGATTTCATTAGGGCGCAACGGAGCATACCACTCACTGATAAAGCTACAAACTGGTAGCTCACCTCCAAGGTATAAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1268

Amino Acids

138.66

Weight (kDa)

9.23

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 19 - 293 3.7e-39 ABC transporter transmembrane region
ABC_tran PF00005 362 - 511 2.2e-33 ABC transporter
ABC_membrane PF00664 697 - 968 4.5e-44 ABC transporter transmembrane region
ABC_tran PF00005 1037 - 1186 1.5e-32 ABC transporter
SMC_N PF02463 1051 - 1229 7.8e-06 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3419, 3441
AasI GACNNNNNNGTC 3 cut(s) 1079, 1394, 1939
AccB1I GGYRCC 1 cut(s) 2046
AccI GTMKAC 3 cut(s) 177, 1157, 2166
AciI CCGC 4 cut(s) 261, 2801, 2969, 3701
AclWI GGATC 7 cut(s) 1251, 1772, 1976, 2999, 3209, 3235, 3258
AcoI YGGCCR 1 cut(s) 3399
AcsI RAATTY 4 cut(s) 907, 948, 3361, 3413
AcuI CTGAAG 7 cut(s) 621, 686, 1008, 1036, 1867, 2075, 2430
AcyI GRCGYC 1 cut(s) 2047
AfaI GTAC 4 cut(s) 1858, 1891, 2124, 3657
AfiI CCNNNNNNNGG 8 cut(s) 267, 1199, 1991, 2075, 3192, 3224, 3541, 3547
AflII CTTAAG 3 cut(s) 1100, 3110, 3254
AflIII ACRYGT 4 cut(s) 447, 1015, 3286, 3623
AhdI GACNNNNNGTC 2 cut(s) 2446, 3571
AhlI ACTAGT 3 cut(s) 1529, 2548, 3154
AjnI CCWGG 3 cut(s) 541, 2175, 3540
AleI CACNNNNGTG 1 cut(s) 2071
Alw21I GWGCWC 3 cut(s) 901, 1489, 3562
Alw26I GTCTC 2 cut(s) 2509, 3265
Alw44I GTGCAC 2 cut(s) 897, 3558
AlwI GGATC 7 cut(s) 1251, 1772, 1976, 2999, 3209, 3235, 3258
AlwNI CAGNNNCTG 1 cut(s) 2921
Ama87I CYCGRG 1 cut(s) 3507
AoxI GGCC 9 cut(s) 501, 571, 880, 2877, 2952, 3399, 3481, 3549, 3663
ApaLI GTGCAC 2 cut(s) 897, 3558
ApoI RAATTY 4 cut(s) 907, 948, 3361, 3413
AseI ATTAAT 1 cut(s) 2133
Asp700I GAANNNNTTC 1 cut(s) 1287
AspLEI GCGC 3 cut(s) 158, 2049, 3741
AspS9I GGNCC 7 cut(s) 571, 1744, 1851, 2458, 2726, 2952, 3710
AsuC2I CCSGG 2 cut(s) 1193, 1849
AsuHPI GGTGA 8 cut(s) 95, 139, 1739, 2245, 2450, 2609, 3632, 3777
AsuII TTCGAA 1 cut(s) 2346
AsuNHI GCTAGC 1 cut(s) 2401
AvaI CYCGRG 1 cut(s) 3507
AvaII GGWCC 5 cut(s) 1744, 1851, 2458, 2726, 3710
AxyI CCTNAGG 1 cut(s) 3125
BaeGI GKGCMC 5 cut(s) 901, 1849, 1955, 3286, 3562
BalI TGGCCA 1 cut(s) 3401
BanI GGYRCC 1 cut(s) 2046
BanII GRGCYC 3 cut(s) 9, 1489, 1916
BarI GAAGNNNNNNTAC 2 cut(s) 1191, 1223
BbsI GAAGAC 4 cut(s) 841, 996, 1240, 2013
Bbv12I GWGCWC 3 cut(s) 901, 1489, 3562
BbvCI CCTCAGC 1 cut(s) 3278
BceAI ACGGC 2 cut(s) 52, 2814
BcgI CGANNNNNNTGC 4 cut(s) 380, 414, 1471, 1505
BciT130I CCWGG 3 cut(s) 543, 2177, 3542
BclI TGATCA 3 cut(s) 129, 1576, 3681
BcnI CCSGG 2 cut(s) 1193, 1849
BcoDI GTCTC 2 cut(s) 2509, 3265
BcuI ACTAGT 3 cut(s) 1529, 2548, 3154
BfmI CTRYAG 2 cut(s) 2805, 3390
BfoI RGCGCY 2 cut(s) 159, 2050
BfrI CTTAAG 3 cut(s) 1100, 3110, 3254
BmcAI AGTACT 1 cut(s) 1858
Bme1390I CCNGG 5 cut(s) 543, 1193, 1849, 2177, 3542
Bme18I GGWCC 5 cut(s) 1744, 1851, 2458, 2726, 3710
BmeRI GACNNNNNGTC 2 cut(s) 2446, 3571
BmeT110I CYCGRG 1 cut(s) 3507
BmgT120I GGNCC 7 cut(s) 571, 1744, 1851, 2458, 2726, 2952, 3710
BmiI GGNNCC 5 cut(s) 1284, 1915, 2048, 2953, 3309
BmrFI CCNGG 5 cut(s) 543, 1193, 1849, 2177, 3542
BmrI ACTGGG 2 cut(s) 1933, 2779
BmsI GCATC 7 cut(s) 382, 504, 1531, 1592, 2084, 2875, 3124
BmtI GCTAGC 1 cut(s) 2405
BmuI ACTGGG 2 cut(s) 1933, 2779
BpiI GAAGAC 4 cut(s) 841, 996, 1240, 2013
BplI GAGNNNNNCTC 4 cut(s) 1194, 1226, 1476, 1508
BpmI CTGGAG 3 cut(s) 525, 2159, 3047
Bpu10I CCTNAGC 3 cut(s) 1493, 3096, 3278
Bpu14I TTCGAA 1 cut(s) 2346
BpuEI CTTGAG 2 cut(s) 1407, 3289
BpuMI CCSGG 2 cut(s) 1193, 1849
BsaHI GRCGYC 1 cut(s) 2047
BsaJI CCNNGG 8 cut(s) 504, 542, 1808, 1926, 1947, 2718, 3294, 3791
BsaXI ACNNNNNCTCC 4 cut(s) 831, 861, 2014, 2044
Bsc4I CCNNNNNNNGG 8 cut(s) 267, 1199, 1991, 2075, 3192, 3224, 3541, 3547
Bse118I RCCGGY 2 cut(s) 857, 3642
Bse21I CCTNAGG 1 cut(s) 3125
Bse3DI GCAATG 6 cut(s) 693, 2084, 2450, 2910, 3633, 3672
BseBI CCWGG 3 cut(s) 543, 2177, 3542
BseDI CCNNGG 8 cut(s) 504, 542, 1808, 1926, 1947, 2718, 3294, 3791
BseGI GGATG 8 cut(s) 1222, 1354, 1546, 2099, 2262, 2360, 3432, 3550
BseLI CCNNNNNNNGG 8 cut(s) 267, 1199, 1991, 2075, 3192, 3224, 3541, 3547
BseMI GCAATG 6 cut(s) 693, 2084, 2450, 2910, 3633, 3672
BseMII CTCAG 7 cut(s) 205, 875, 1507, 3087, 3110, 3139, 3269
BseRI GAGGAG 7 cut(s) 376, 1038, 1834, 2022, 3052, 3477, 3527
BseSI GKGCMC 5 cut(s) 901, 1849, 1955, 3286, 3562
BsgI GTGCAG 2 cut(s) 2403, 2561
BshFI GGCC 9 cut(s) 503, 573, 882, 2879, 2954, 3401, 3483, 3551, 3665
BshNI GGYRCC 1 cut(s) 2046
BsiHKAI GWGCWC 3 cut(s) 901, 1489, 3562
BsiHKCI CYCGRG 1 cut(s) 3507
BsiSI CCGG 6 cut(s) 609, 858, 1109, 1193, 1849, 3643
BslFI GGGAC 7 cut(s) 79, 820, 1945, 2091, 2182, 3036, 3129
BslI CCNNNNNNNGG 8 cut(s) 267, 1199, 1991, 2075, 3192, 3224, 3541, 3547
BsmAI GTCTC 2 cut(s) 2509, 3265
BsmFI GGGAC 7 cut(s) 79, 820, 1945, 2091, 2182, 3036, 3129
BsmI GAATGC 1 cut(s) 2068
BsnI GGCC 9 cut(s) 503, 573, 882, 2879, 2954, 3401, 3483, 3551, 3665
BsoBI CYCGRG 1 cut(s) 3507
Bsp119I TTCGAA 1 cut(s) 2346
Bsp1286I GDGCHC 8 cut(s) 9, 901, 1489, 1849, 1916, 1955, 3286, 3562
Bsp19I CCATGG 2 cut(s) 1926, 1947
BspACI CCGC 4 cut(s) 261, 2801, 2969, 3701
BspANI GGCC 9 cut(s) 503, 573, 882, 2879, 2954, 3401, 3483, 3551, 3665
BspCNI CTCAG 7 cut(s) 204, 876, 1506, 3088, 3111, 3138, 3270
BspHI TCATGA 2 cut(s) 105, 3409
BspLI GGNNCC 5 cut(s) 1284, 1915, 2048, 2953, 3309
BspMAI CTGCAG 1 cut(s) 3394
BspOI GCTAGC 1 cut(s) 2405
BspPI GGATC 7 cut(s) 1251, 1772, 1976, 2999, 3209, 3235, 3258
BspT104I TTCGAA 1 cut(s) 2346
BspT107I GGYRCC 1 cut(s) 2046
BspTI CTTAAG 3 cut(s) 1100, 3110, 3254
BsrDI GCAATG 6 cut(s) 693, 2084, 2450, 2910, 3633, 3672
BsrFI RCCGGY 2 cut(s) 857, 3642
BssAI RCCGGY 2 cut(s) 857, 3642
BssECI CCNNGG 8 cut(s) 504, 542, 1808, 1926, 1947, 2718, 3294, 3791
BssNI GRCGYC 1 cut(s) 2047
BssT1I CCWWGG 6 cut(s) 504, 1926, 1947, 2718, 3294, 3791
Bst2UI CCWGG 3 cut(s) 543, 2177, 3542
Bst4CI ACNGT 9 cut(s) 649, 709, 968, 1449, 1548, 2494, 3148, 3452, 3655
Bst6I CTCTTC 2 cut(s) 2582, 2686
BstACI GRCGYC 1 cut(s) 2047
BstAFI CTTAAG 3 cut(s) 1100, 3110, 3254
BstAPI GCANNNNNTGC 3 cut(s) 935, 1532, 1541
BstBI TTCGAA 1 cut(s) 2346
BstC8I GCNNGC 5 cut(s) 1688, 2051, 2403, 2770, 3139
BstDEI CTNAG 9 cut(s) 119, 191, 884, 1493, 2730, 3096, 3119, 3125, 3278
BstDSI CCRYGG 2 cut(s) 1926, 1947
BstENI CCTNNNNNAGG 1 cut(s) 3545
BstF5I GGATG 8 cut(s) 1222, 1354, 1546, 2099, 2262, 2360, 3432, 3550
BstH2I RGCGCY 2 cut(s) 159, 2050
BstHHI GCGC 3 cut(s) 158, 2049, 3741
BstMAI GTCTC 2 cut(s) 2509, 3265
BstNI CCWGG 3 cut(s) 543, 2177, 3542
BstNSI RCATGY 7 cut(s) 22, 451, 848, 1019, 1226, 3290, 3627
BstSCI CCNGG 5 cut(s) 541, 1191, 1847, 2175, 3540
BstSFI CTRYAG 2 cut(s) 2805, 3390
BstSLI GKGCMC 5 cut(s) 901, 1849, 1955, 3286, 3562
BstV2I GAAGAC 4 cut(s) 841, 996, 1240, 2013
BstX2I RGATCY 3 cut(s) 1256, 1777, 3250
BstXI CCANNNNNNTGG 4 cut(s) 347, 1451, 1909, 1927
BstYI RGATCY 3 cut(s) 1256, 1777, 3250
Bsu36I CCTNAGG 1 cut(s) 3125
BsuRI GGCC 9 cut(s) 503, 573, 882, 2879, 2954, 3401, 3483, 3551, 3665
BtgI CCRYGG 2 cut(s) 1926, 1947
BtgZI GCGATG 2 cut(s) 527, 1601
BtsCI GGATG 8 cut(s) 1222, 1354, 1546, 2099, 2262, 2360, 3432, 3550
BtsI GCAGTG 2 cut(s) 2544, 2898
BtsIMutI CAGTG 8 cut(s) 157, 1891, 2406, 2544, 2898, 2962, 3153, 3758
Cac8I GCNNGC 5 cut(s) 1688, 2051, 2403, 2770, 3139
CaiI CAGNNNCTG 1 cut(s) 2921
CciI TCATGA 2 cut(s) 105, 3409
CfoI GCGC 3 cut(s) 158, 2049, 3741
Cfr10I RCCGGY 2 cut(s) 857, 3642
Cfr13I GGNCC 7 cut(s) 571, 1744, 1851, 2458, 2726, 2952, 3710
Csp6I GTAC 4 cut(s) 1857, 1890, 2123, 3656
CspCI CAANNNNNGTGG 2 cut(s) 3172, 3207
CviQI GTAC 4 cut(s) 1857, 1890, 2123, 3656
DdeI CTNAG 9 cut(s) 119, 191, 884, 1493, 2730, 3096, 3119, 3125, 3278
DinI GGCGCC 1 cut(s) 2048
DrdI GACNNNNNNGTC 3 cut(s) 1079, 1394, 1939
DriI GACNNNNNGTC 2 cut(s) 2446, 3571
DseDI GACNNNNNNGTC 3 cut(s) 1079, 1394, 1939
EaeI YGGCCR 1 cut(s) 3399
Eam1104I CTCTTC 2 cut(s) 2582, 2686
Eam1105I GACNNNNNGTC 2 cut(s) 2446, 3571
EarI CTCTTC 2 cut(s) 2582, 2686
Ecl136II GAGCTC 1 cut(s) 1487
Eco130I CCWWGG 6 cut(s) 504, 1926, 1947, 2718, 3294, 3791
Eco147I AGGCCT 2 cut(s) 882, 2879
Eco24I GRGCYC 3 cut(s) 9, 1489, 1916
Eco47I GGWCC 5 cut(s) 1744, 1851, 2458, 2726, 3710
Eco53kI GAGCTC 1 cut(s) 1487
Eco57I CTGAAG 7 cut(s) 621, 686, 1008, 1036, 1867, 2075, 2430
Eco81I CCTNAGG 1 cut(s) 3125
Eco88I CYCGRG 1 cut(s) 3507
EcoICRI GAGCTC 1 cut(s) 1487
EcoNI CCTNNNNNAGG 1 cut(s) 3545
EcoRI GAATTC 2 cut(s) 948, 3361
EcoRII CCWGG 3 cut(s) 541, 2175, 3540
EcoT14I CCWWGG 6 cut(s) 504, 1926, 1947, 2718, 3294, 3791
EcoT38I GRGCYC 3 cut(s) 9, 1489, 1916
EgeI GGCGCC 1 cut(s) 2048
EheI GGCGCC 1 cut(s) 2048
ErhI CCWWGG 6 cut(s) 504, 1926, 1947, 2718, 3294, 3791
FalI AAGNNNNNCTT 4 cut(s) 2073, 2105, 2917, 2949
FaqI GGGAC 7 cut(s) 79, 820, 1945, 2091, 2182, 3036, 3129
FauNDI CATATG 2 cut(s) 139, 658
FbaI TGATCA 3 cut(s) 129, 1576, 3681
FblI GTMKAC 3 cut(s) 177, 1157, 2166
FokI GGATG 8 cut(s) 1229, 1361, 1553, 2106, 2249, 2367, 3439, 3557
FriOI GRGCYC 3 cut(s) 9, 1489, 1916
GlaI GCGC 3 cut(s) 157, 2048, 3740
GsuI CTGGAG 3 cut(s) 525, 2159, 3047
HaeII RGCGCY 2 cut(s) 159, 2050
HaeIII GGCC 9 cut(s) 503, 573, 882, 2879, 2954, 3401, 3483, 3551, 3665
HapII CCGG 6 cut(s) 609, 858, 1109, 1193, 1849, 3643
HhaI GCGC 3 cut(s) 158, 2049, 3741
Hin1I GRCGYC 1 cut(s) 2047
Hin6I GCGC 3 cut(s) 156, 2047, 3739
HinP1I GCGC 3 cut(s) 156, 2047, 3739
HincII GTYRAC 5 cut(s) 453, 1158, 1626, 2301, 3616
HindII GTYRAC 5 cut(s) 453, 1158, 1626, 2301, 3616
HindIII AAGCTT 1 cut(s) 2333
HpaI GTTAAC 1 cut(s) 3616
HpaII CCGG 6 cut(s) 609, 858, 1109, 1193, 1849, 3643
HphI GGTGA 8 cut(s) 95, 139, 1739, 2245, 2450, 2609, 3632, 3777
Hpy99I CGWCG 1 cut(s) 782
HpyCH4III ACNGT 9 cut(s) 649, 709, 968, 1449, 1548, 2494, 3148, 3452, 3655
HpyCH4IV ACGT 2 cut(s) 777, 2342
HpyF3I CTNAG 9 cut(s) 119, 191, 884, 1493, 2730, 3096, 3119, 3125, 3278
HpySE526I ACGT 2 cut(s) 777, 2342
Hsp92I GRCGYC 1 cut(s) 2047
HspAI GCGC 3 cut(s) 156, 2047, 3739
KasI GGCGCC 1 cut(s) 2046
Ksp22I TGATCA 3 cut(s) 129, 1576, 3681
KspAI GTTAAC 1 cut(s) 3616
LmnI GCTCC 9 cut(s) 544, 1337, 1717, 1821, 1919, 2559, 2786, 3307, 3746
LweI GCATC 7 cut(s) 382, 504, 1531, 1592, 2084, 2875, 3124
MaeII ACGT 2 cut(s) 777, 2342
MaeIII GTNAC 6 cut(s) 709, 817, 1011, 1055, 1401, 2438
MfeI CAATTG 2 cut(s) 1572, 2633
MflI RGATCY 3 cut(s) 1256, 1777, 3250
MhlI GDGCHC 8 cut(s) 9, 901, 1489, 1849, 1916, 1955, 3286, 3562
MlsI TGGCCA 1 cut(s) 3401
MluNI TGGCCA 1 cut(s) 3401
Mly113I GGCGCC 1 cut(s) 2047
MlyI GAGTC 2 cut(s) 61, 2217
MmeI TCCRAC 5 cut(s) 199, 230, 1468, 2290, 3110
Mox20I TGGCCA 1 cut(s) 3401
MroXI GAANNNNTTC 1 cut(s) 1287
MscI TGGCCA 1 cut(s) 3401
MslI CAYNNNNRTG 5 cut(s) 490, 1907, 1925, 2071, 3677
Msp20I TGGCCA 1 cut(s) 3401
MspCI CTTAAG 3 cut(s) 1100, 3110, 3254
MspI CCGG 6 cut(s) 609, 858, 1109, 1193, 1849, 3643
MspR9I CCNGG 5 cut(s) 543, 1193, 1849, 2177, 3542
MunI CAATTG 2 cut(s) 1572, 2633
Mva1269I GAATGC 1 cut(s) 2068
MvaI CCWGG 3 cut(s) 543, 2177, 3542
NarI GGCGCC 1 cut(s) 2047
NciI CCSGG 2 cut(s) 1193, 1849
NcoI CCATGG 2 cut(s) 1926, 1947
NdeI CATATG 2 cut(s) 139, 658
NheI GCTAGC 1 cut(s) 2401
NlaIV GGNNCC 5 cut(s) 1284, 1915, 2048, 2953, 3309
NmeAIII GCCGAG 1 cut(s) 1789
NmuCI GTSAC 2 cut(s) 1011, 2438
NspI RCATGY 7 cut(s) 22, 451, 848, 1019, 1226, 3290, 3627
NspV TTCGAA 1 cut(s) 2346
OliI CACNNNNGTG 1 cut(s) 2071
PagI TCATGA 2 cut(s) 105, 3409
PceI AGGCCT 2 cut(s) 882, 2879
PciI ACATGT 4 cut(s) 447, 1015, 3286, 3623
PctI GAATGC 1 cut(s) 2068
PdmI GAANNNNTTC 1 cut(s) 1287
PfoI TCCNGGA 2 cut(s) 2175, 3540
PleI GAGTC 2 cut(s) 61, 2216
PluTI GGCGCC 1 cut(s) 2050
PpsI GAGTC 2 cut(s) 61, 2216
PscI ACATGT 4 cut(s) 447, 1015, 3286, 3623
PshBI ATTAAT 1 cut(s) 2133
PsiI TTATAA 2 cut(s) 3419, 3441
Psp124BI GAGCTC 1 cut(s) 1489
Psp6I CCWGG 3 cut(s) 541, 2175, 3540
PspGI CCWGG 3 cut(s) 541, 2175, 3540
PspN4I GGNNCC 5 cut(s) 1284, 1915, 2048, 2953, 3309
PspPI GGNCC 7 cut(s) 571, 1744, 1851, 2458, 2726, 2952, 3710
PsrI GAACNNNNNNTAC 2 cut(s) 2406, 2438
PstI CTGCAG 1 cut(s) 3394
PstNI CAGNNNCTG 1 cut(s) 2921
PsuI RGATCY 3 cut(s) 1256, 1777, 3250
RsaI GTAC 4 cut(s) 1858, 1891, 2124, 3657
RsaNI GTAC 4 cut(s) 1857, 1890, 2123, 3656
RseI CAYNNNNRTG 5 cut(s) 490, 1907, 1925, 2071, 3677
SacI GAGCTC 1 cut(s) 1489
SalI GTCGAC 1 cut(s) 1156
Sau96I GGNCC 7 cut(s) 571, 1744, 1851, 2458, 2726, 2952, 3710
ScaI AGTACT 1 cut(s) 1858
SchI GAGTC 2 cut(s) 61, 2217
ScrFI CCNGG 5 cut(s) 543, 1193, 1849, 2177, 3542
SduI GDGCHC 8 cut(s) 9, 901, 1489, 1849, 1916, 1955, 3286, 3562
SfaNI GCATC 7 cut(s) 382, 504, 1531, 1592, 2084, 2875, 3124
SfcI CTRYAG 2 cut(s) 2805, 3390
SfoI GGCGCC 1 cut(s) 2048
SfuI TTCGAA 1 cut(s) 2346
SinI GGWCC 5 cut(s) 1744, 1851, 2458, 2726, 3710
SmiMI CAYNNNNRTG 5 cut(s) 490, 1907, 1925, 2071, 3677
SmlI CTYRAG 5 cut(s) 1100, 1422, 3110, 3254, 3268
SmoI CTYRAG 5 cut(s) 1100, 1422, 3110, 3254, 3268
SpeI ACTAGT 3 cut(s) 1529, 2548, 3154
SseBI AGGCCT 2 cut(s) 882, 2879
SsiI CCGC 4 cut(s) 261, 2801, 2969, 3701
SspDI GGCGCC 1 cut(s) 2046
SstI GAGCTC 1 cut(s) 1489
StuI AGGCCT 2 cut(s) 882, 2879
StyD4I CCNGG 5 cut(s) 541, 1191, 1847, 2175, 3540
StyI CCWWGG 6 cut(s) 504, 1926, 1947, 2718, 3294, 3791
TaaI ACNGT 9 cut(s) 649, 709, 968, 1449, 1548, 2494, 3148, 3452, 3655
TaiI ACGT 2 cut(s) 780, 2345
TaqI TCGA 6 cut(s) 278, 1157, 1176, 2346, 2425, 3057
TatI WGTACW 3 cut(s) 1856, 2122, 3655
TauI GCSGC 1 cut(s) 2804
TscAI CASTG 8 cut(s) 157, 1891, 2413, 2544, 2905, 2962, 3153, 3765
TseFI GTSAC 2 cut(s) 1011, 2438
Tsp45I GTSAC 2 cut(s) 1011, 2438
TspGWI ACGGA 2 cut(s) 3323, 3759
TspRI CASTG 8 cut(s) 157, 1891, 2413, 2544, 2905, 2962, 3153, 3765
Vha464I CTTAAG 3 cut(s) 1100, 3110, 3254
VneI GTGCAC 2 cut(s) 897, 3558
VpaK11BI GGWCC 5 cut(s) 1744, 1851, 2458, 2726, 3710
VspI ATTAAT 1 cut(s) 2133
XagI CCTNNNNNAGG 1 cut(s) 3545
XapI RAATTY 4 cut(s) 907, 948, 3361, 3413
XceI RCATGY 7 cut(s) 22, 451, 848, 1019, 1226, 3290, 3627
XcmI CCANNNNNNNNNTGG 2 cut(s) 1451, 3798
XmiI GTMKAC 3 cut(s) 177, 1157, 2166
XmnI GAANNNNTTC 1 cut(s) 1287
ZrmI AGTACT 1 cut(s) 1858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.