Rh2AG615700

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000317
Physical Location & Seq
Forward (+)
84035396 .. 84035797
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG615700.1

Sequence Viewer

Length: 402 bp
ATGAGCCTAATAATTGCATGGAGGCTTGCCGTAGTCATCATTGCCTTCCAACCCATAGTCATTTTCACCCTTTATTCTAGGCATGTCCTACTCGGAAGAATGTCCAGCAAAACCATTAAGAGCCAAGAGGAAAGTAGCAAGCTTGCAGCTGAAGCTATCTACAACCACCGGACCGTAACTGCCTTCTCAGCTCAGAGCAGGATTATGAAAATGCTAGAAAAGGTCCAAGAAGGCCCATATAGAGAAAGCTTACGACAATTGTGGTTTGCTGGTATTGGGCTCGGGTTTTCCATGAGCATTGCAATGCTCATTGCTGGTTTAAGCTATTGGTATGGCAGCATGCTCGTCCCCAGGGCTACCTCACACCAAGATCAGCCTTTCAAACCATTCTCATTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

133

Amino Acids

15.14

Weight (kDa)

9.99

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 1 - 116 5.3e-16 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 171
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 6 cut(s) 142, 149, 155, 191, 249, 324
AluI AGCT 6 cut(s) 142, 149, 155, 191, 249, 324
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 146, 336
AspS9I GGNCC 3 cut(s) 171, 223, 233
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 171, 223
BanII GRGCYC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 158, 348
BceAI ACGGC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 352
BfaI CTAG 2 cut(s) 78, 215
BisI GCNGC 2 cut(s) 147, 337
BlsI GCNGC 2 cut(s) 148, 338
Bme1390I CCNGG 1 cut(s) 352
Bme18I GGWCC 2 cut(s) 171, 223
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 3 cut(s) 171, 223, 233
BmrFI CCNGG 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 350, 351
BsaWI WCCGGW 1 cut(s) 168
Bse3DI GCAATG 4 cut(s) 39, 297, 309, 309
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 350, 351
BseMI GCAATG 4 cut(s) 39, 297, 309, 309
BseMII CTCAG 2 cut(s) 201, 206
BseXI GCAGC 2 cut(s) 158, 348
BshFI GGCC 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 370
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 200, 205
BsrDI GCAATG 4 cut(s) 39, 297, 309, 309
BssECI CCNNGG 2 cut(s) 350, 351
BssMI GATC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 175
BstC8I GCNNGC 4 cut(s) 27, 140, 144, 341
BstDEI CTNAG 2 cut(s) 187, 192
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 152, 188
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 2 cut(s) 86, 343
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 158, 348
BsuRI GGCC 1 cut(s) 234
Cac8I GCNNGC 4 cut(s) 27, 140, 144, 341
Cfr13I GGNCC 3 cut(s) 171, 223, 233
CpoI CGGWCCG 1 cut(s) 171
CspI CGGWCCG 1 cut(s) 171
CviAII CATG 4 cut(s) 18, 83, 292, 340
DdeI CTNAG 2 cut(s) 187, 192
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 171, 223
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 282
FaeI CATG 4 cut(s) 21, 86, 295, 343
FaiI YATR 9 cut(s) 19, 56, 84, 206, 238, 240, 293, 333, 341
FaqI GGGAC 1 cut(s) 332
FatI CATG 4 cut(s) 17, 82, 291, 339
Fnu4HI GCNGC 2 cut(s) 147, 337
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 147, 337
FspBI CTAG 2 cut(s) 78, 215
GluI GCNGC 2 cut(s) 147, 337
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 169
Hin1II CATG 4 cut(s) 21, 86, 295, 343
HindIII AAGCTT 2 cut(s) 140, 247
HpaII CCGG 1 cut(s) 169
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 95, 195
HpyAV CCTTC 3 cut(s) 55, 193, 224
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 17, 146, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 188
HpyF3I CTNAG 2 cut(s) 187, 192
Hsp92II CATG 4 cut(s) 21, 86, 295, 343
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 7 cut(s) 118, 182, 184, 255, 300, 337, 364
Lsp1109I GCAGC 2 cut(s) 158, 348
MaeI CTAG 2 cut(s) 78, 215
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 1 cut(s) 108
MfeI CAATTG 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 2 cut(s) 12, 257
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 3 cut(s) 15, 121, 370
MseI TTAA 2 cut(s) 117, 320
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 352
MunI CAATTG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 2 cut(s) 152, 188
NdeII GATC 1 cut(s) 370
NlaIII CATG 4 cut(s) 21, 86, 295, 343
NspI RCATGY 2 cut(s) 86, 343
PaeI GCATGC 1 cut(s) 343
PasI CCCWGGG 1 cut(s) 351
PkrI GCNGC 2 cut(s) 148, 338
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspPI GGNCC 3 cut(s) 171, 223, 233
PvuII CAGCTG 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 302
Rsr2I CGGWCCG 1 cut(s) 171
RsrII CGGWCCG 1 cut(s) 171
SaqAI TTAA 2 cut(s) 117, 320
SatI GCNGC 2 cut(s) 147, 337
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 3 cut(s) 171, 223, 233
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 282
SetI ASST 8 cut(s) 144, 151, 157, 193, 225, 251, 326, 362
SinI GGWCC 2 cut(s) 171, 223
SmiMI CAYNNNNRTG 1 cut(s) 302
SphI GCATGC 1 cut(s) 343
Sse9I AATT 2 cut(s) 12, 257
SspMI CTAG 2 cut(s) 78, 215
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 175
TasI AATT 2 cut(s) 12, 257
Tru1I TTAA 2 cut(s) 117, 320
Tru9I TTAA 2 cut(s) 117, 320
TseI GCWGC 2 cut(s) 146, 336
TspDTI ATGAA 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 171, 223
XceI RCATGY 2 cut(s) 86, 343
XspI CTAG 2 cut(s) 78, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.