Rh2CG596900

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000317
Physical Location & Seq
Forward (+)
77232649 .. 77242682
10034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG596900.1

Sequence Viewer

Length: 771 bp
ATGTTCTCAGTCAAAAAGTTTAATTTCTCTTGCTATATTACCTTACTAGACTGTCAATTTGGATCGCATTTAAATGTATGGTTCTGCCAAAGAACATTAGTATTCTCTTTACTGAAGAATTATGTCATTTATGACCCCAATAAATTTTCAAATTTGAATCAGGTGCCAGACTGTTTAAGTAAAGTATCTTCGTTCATTTCTGGGTACTTAATAGCATTTGTATTGAAGTGGGATCTGGCCATTGTGGGACTCCCACTTGCTTTGCTTCTGATACTTCCCTGTTGGATCTGCGGAAGAAGTTTAACAGGATTAGCAAGAAAGAGAAGAGAAGAATGCATCAAGGCTGGATCAATAGCAGAGCAGGCAATATCATCCAGTAGAACAGTTTATGCATTTACTGGAGAGAACAACACTATATACCAATTCTCTGAAGCTCTACGAGGGACCATAAAGCTGGGGTTGAAGCAGGGCATGATTAAAGGTTTGGCCATTGGTAGCAGTACTGGCACAGCACTTGCCAATTGGGCTGTCATGTCTTATTATGGTAGCAGAAAGGTCATATCCCAAGGTGCTCTAGGAGGGGCTATTTCAGCAGTTGGCCATTTGATGGTCCACGGAGGAGCAGAAACGTTGTTGTCAAAGATGCTCACTTTTGAAGTTGCATGGTTCGATGAGGTTCAAAATTCTAGCGGTGCCATTTGTGCTCAGCTCACCAAGGACGCTGAATTGGAGAGATCTTTAGCTGGTGACAGAATGGGTCTTCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

256

Amino Acids

27.95

Weight (kDa)

9.0

Isoelectric Point (pI)

29.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 56 - 189 7.2e-20 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 163, 692
AccB7I CCANNNNNTGG 1 cut(s) 607
AciI CCGC 2 cut(s) 291, 690
AclI AACGTT 1 cut(s) 629
AclWI GGATC 4 cut(s) 70, 240, 293, 355
AcoI YGGCCR 3 cut(s) 237, 486, 598
AcsI RAATTY 3 cut(s) 143, 151, 682
AcuI CTGAAG 2 cut(s) 134, 450
AfaI GTAC 2 cut(s) 206, 502
AfiI CCNNNNNNNGG 1 cut(s) 607
AgsI TTSAA 6 cut(s) 150, 157, 226, 463, 656, 680
AluBI AGCT 4 cut(s) 434, 454, 709, 743
AluI AGCT 4 cut(s) 434, 454, 709, 743
Alw21I GWGCWC 2 cut(s) 574, 706
AlwI GGATC 4 cut(s) 70, 240, 293, 355
AoxI GGCC 3 cut(s) 237, 486, 598
ApoI RAATTY 3 cut(s) 143, 151, 682
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspS9I GGNCC 2 cut(s) 444, 610
AsuHPI GGTGA 2 cut(s) 703, 758
AvaII GGWCC 2 cut(s) 444, 610
BalI TGGCCA 3 cut(s) 239, 488, 600
BanI GGYRCC 2 cut(s) 163, 692
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
BbsI GAAGAC 1 cut(s) 752
Bbv12I GWGCWC 2 cut(s) 574, 706
BccI CCATC 1 cut(s) 601
BfaI CTAG 3 cut(s) 47, 575, 687
BglI GCCNNNNNGGC 1 cut(s) 524
BglII AGATCT 1 cut(s) 734
BlpI GCTNAGC 1 cut(s) 705
BmcAI AGTACT 1 cut(s) 502
Bme18I GGWCC 2 cut(s) 444, 610
BmgT120I GGNCC 2 cut(s) 444, 610
BmiI GGNNCC 3 cut(s) 165, 445, 694
BmsI GCATC 2 cut(s) 345, 633
BpiI GAAGAC 1 cut(s) 752
BpmI CTGGAG 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 705
BsaJI CCNNGG 3 cut(s) 565, 613, 714
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse1I ACTGG 3 cut(s) 375, 403, 508
BseDI CCNNGG 3 cut(s) 565, 613, 714
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMII CTCAG 2 cut(s) 21, 719
BseNI ACTGG 3 cut(s) 375, 403, 508
BseRI GAGGAG 1 cut(s) 633
BseYI CCCAGC 1 cut(s) 454
BshFI GGCC 3 cut(s) 239, 488, 600
BshNI GGYRCC 2 cut(s) 163, 692
BsiHKAI GWGCWC 2 cut(s) 574, 706
BslFI GGGAC 2 cut(s) 261, 457
BslI CCNNNNNNNGG 1 cut(s) 607
BsmFI GGGAC 2 cut(s) 261, 457
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 3 cut(s) 239, 488, 600
Bsp1286I GDGCHC 2 cut(s) 574, 706
Bsp143I GATC 5 cut(s) 62, 232, 285, 347, 734
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 2 cut(s) 291, 690
BspANI GGCC 3 cut(s) 239, 488, 600
BspCNI CTCAG 2 cut(s) 20, 718
BspLI GGNNCC 3 cut(s) 165, 445, 694
BspPI GGATC 4 cut(s) 70, 240, 293, 355
BspT107I GGYRCC 2 cut(s) 163, 692
BsrI ACTGG 3 cut(s) 375, 403, 508
BssECI CCNNGG 3 cut(s) 565, 613, 714
BssMI GATC 5 cut(s) 62, 232, 285, 347, 734
BssT1I CCWWGG 2 cut(s) 565, 714
Bst4CI ACNGT 3 cut(s) 53, 173, 385
Bst6I CTCTTC 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 7, 705
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 1 cut(s) 371
BstKTI GATC 5 cut(s) 65, 235, 288, 350, 737
BstMBI GATC 5 cut(s) 62, 232, 285, 347, 734
BstMWI GCNNNNNNNGC 5 cut(s) 362, 504, 524, 590, 701
BstV2I GAAGAC 1 cut(s) 752
BstX2I RGATCY 3 cut(s) 232, 285, 734
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 3 cut(s) 232, 285, 734
BsuRI GGCC 3 cut(s) 239, 488, 600
BtgI CCRYGG 1 cut(s) 613
BtsCI GGATG 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 444, 610
CseI GACGC 1 cut(s) 728
Csp6I GTAC 2 cut(s) 205, 501
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 472, 532, 663
CviQI GTAC 2 cut(s) 205, 501
DdeI CTNAG 2 cut(s) 7, 705
DpnI GATC 5 cut(s) 64, 234, 287, 349, 736
DpnII GATC 5 cut(s) 62, 232, 285, 347, 734
DraI TTTAAA 1 cut(s) 72
EaeI YGGCCR 3 cut(s) 237, 486, 598
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 565, 714
Eco47I GGWCC 2 cut(s) 444, 610
Eco57I CTGAAG 2 cut(s) 134, 450
EcoT14I CCWWGG 2 cut(s) 565, 714
EcoT22I ATGCAT 2 cut(s) 338, 394
ErhI CCWWGG 2 cut(s) 565, 714
FaeI CATG 3 cut(s) 475, 535, 666
FaqI GGGAC 2 cut(s) 261, 457
FatI CATG 3 cut(s) 471, 531, 662
FokI GGATG 1 cut(s) 358
FspBI CTAG 3 cut(s) 47, 575, 687
GsaI CCCAGC 1 cut(s) 458
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 3 cut(s) 239, 488, 600
HgaI GACGC 1 cut(s) 728
Hin1II CATG 3 cut(s) 475, 535, 666
HinfI GANTC 2 cut(s) 157, 249
HphI GGTGA 2 cut(s) 703, 758
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 2 cut(s) 270, 430
Hpy8I GTNNAC 1 cut(s) 613
HpyCH4III ACNGT 3 cut(s) 53, 173, 385
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 3 cut(s) 336, 392, 662
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 504, 524, 590, 701
HpyF3I CTNAG 2 cut(s) 7, 705
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 3 cut(s) 475, 535, 666
Kzo9I GATC 5 cut(s) 62, 232, 285, 347, 734
LmnI GCTCC 1 cut(s) 620
LweI GCATC 2 cut(s) 345, 633
MaeI CTAG 3 cut(s) 47, 575, 687
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 1 cut(s) 746
MalI GATC 5 cut(s) 64, 234, 287, 349, 736
MboI GATC 5 cut(s) 62, 232, 285, 347, 734
MboII GAAGA 6 cut(s) 127, 180, 306, 336, 341, 752
MfeI CAATTG 1 cut(s) 520
MflI RGATCY 3 cut(s) 232, 285, 734
MhlI GDGCHC 2 cut(s) 574, 706
MlsI TGGCCA 3 cut(s) 239, 488, 600
MluCI AATT 9 cut(s) 22, 56, 118, 143, 151, 422, 520, 682, 725
MluNI TGGCCA 3 cut(s) 239, 488, 600
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 4 cut(s) 434, 572, 611, 667
Mox20I TGGCCA 3 cut(s) 239, 488, 600
Mph1103I ATGCAT 2 cut(s) 338, 394
MscI TGGCCA 3 cut(s) 239, 488, 600
MseI TTAA 6 cut(s) 21, 71, 176, 209, 302, 477
MslI CAYNNNNRTG 1 cut(s) 72
Msp20I TGGCCA 3 cut(s) 239, 488, 600
MunI CAATTG 1 cut(s) 520
Mva1269I GAATGC 1 cut(s) 338
MwoI GCNNNNNNNGC 5 cut(s) 362, 504, 524, 590, 701
NdeII GATC 5 cut(s) 62, 232, 285, 347, 734
NlaIII CATG 3 cut(s) 475, 535, 666
NlaIV GGNNCC 3 cut(s) 165, 445, 694
NmuCI GTSAC 1 cut(s) 746
NsiI ATGCAT 2 cut(s) 338, 394
PctI GAATGC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 607
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 629
PspFI CCCAGC 1 cut(s) 454
PspN4I GGNNCC 3 cut(s) 165, 445, 694
PspPI GGNCC 2 cut(s) 444, 610
PsuI RGATCY 3 cut(s) 232, 285, 734
RsaI GTAC 2 cut(s) 206, 502
RsaNI GTAC 2 cut(s) 205, 501
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 6 cut(s) 21, 71, 176, 209, 302, 477
Sau3AI GATC 5 cut(s) 62, 232, 285, 347, 734
Sau96I GGNCC 2 cut(s) 444, 610
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 1 cut(s) 243
SduI GDGCHC 2 cut(s) 574, 706
SfaNI GCATC 2 cut(s) 345, 633
SinI GGWCC 2 cut(s) 444, 610
SmiI ATTTAAAT 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 9 cut(s) 22, 56, 118, 143, 151, 422, 520, 682, 725
SsiI CCGC 2 cut(s) 291, 690
SspMI CTAG 3 cut(s) 47, 575, 687
StyI CCWWGG 2 cut(s) 565, 714
SwaI ATTTAAAT 1 cut(s) 72
TaaI ACNGT 3 cut(s) 53, 173, 385
TaiI ACGT 1 cut(s) 632
TaqI TCGA 1 cut(s) 669
TasI AATT 9 cut(s) 22, 56, 118, 143, 151, 422, 520, 682, 725
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 6 cut(s) 21, 71, 176, 209, 302, 477
Tru9I TTAA 6 cut(s) 21, 71, 176, 209, 302, 477
TseFI GTSAC 1 cut(s) 746
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 630
Van91I CCANNNNNTGG 1 cut(s) 607
VpaK11BI GGWCC 2 cut(s) 444, 610
XapI RAATTY 3 cut(s) 143, 151, 682
XspI CTAG 3 cut(s) 47, 575, 687
ZrmI AGTACT 1 cut(s) 502
Zsp2I ATGCAT 2 cut(s) 338, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.