Rh2CG597000

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000317
Physical Location & Seq
Forward (+)
77242713 .. 77243267
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG597000.1

Sequence Viewer

Length: 519 bp
ATGGGTCTAATAATTGTATGGAGGCTTGCCATACTCATCATTGTTGTCCAACCCATAGTCATCCTCAGCCTATATGCTAAGCGTGTCCTACTCAAAAGAATATCCATCAGAGGCACCAAAGCCCAAGAGGAAAGTTGTAAGCTTGCAGCTGAAGCTATCTACAACCACCGAACTGTTACTGCCTTCTCGGCCCAGAACAGGGTTTTGAAAATGCTAGACAAGGCCCAAGAAACCCCACGTAGAGAAAACCTACAACAATCGTGGTTTGCAGGTATCGGACTCGGGTTCGCCGAGAGCATTATAGTCATCAATTGGGGGCTGAGTTATTGGTATGGCAGCAGGCTTGTCCACCAAGGCTACCTTACTCCAAGATCAGTCTTTGAGACTATCCTCATTTTAGTAACTACCGGTTGGGTCATAGCAAATGTCGGAAGCATGACATCGGATCTTGCCATCGGCTTGGATGCAATCACGTCCATTTTTAGTATCTTAGACCGGACAACCAGAATAGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

172

Amino Acids

19.31

Weight (kDa)

9.77

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 1 - 133 3.4e-19 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 113
AclWI GGATC 1 cut(s) 453
AcuI CTGAAG 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 198, 199
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 1 cut(s) 208
AjiI CACGTC 1 cut(s) 474
AluBI AGCT 3 cut(s) 142, 149, 155
AluI AGCT 3 cut(s) 142, 149, 155
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 189, 222
ApeKI GCWGC 2 cut(s) 146, 336
AsiGI ACCGGT 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 190, 223
AvaI CYCGRG 1 cut(s) 281
BanI GGYRCC 1 cut(s) 113
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 158, 348
BccI CCATC 2 cut(s) 113, 461
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 260
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 147, 337
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 2 cut(s) 148, 338
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 190, 223
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 454
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 352
BsaWI WCCGGW 2 cut(s) 407, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 199
Bse118I RCCGGY 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 60, 469
BseLI CCNNNNNNNGG 2 cut(s) 198, 199
BseMII CTCAG 2 cut(s) 79, 311
BseXI GCAGC 2 cut(s) 158, 348
BshFI GGCC 2 cut(s) 191, 224
BshNI GGYRCC 1 cut(s) 113
BshTI ACCGGT 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 408, 496
BslI CCNNNNNNNGG 2 cut(s) 198, 199
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 2 cut(s) 191, 224
BsoBI CYCGRG 1 cut(s) 281
Bsp143I GATC 2 cut(s) 371, 445
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 2 cut(s) 191, 224
BspCNI CTCAG 2 cut(s) 78, 312
BspLI GGNNCC 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 2 cut(s) 371, 445
BssT1I CCWWGG 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 27, 144, 341
BstDEI CTNAG 4 cut(s) 65, 78, 320, 490
BstF5I GGATG 2 cut(s) 60, 469
BstKTI GATC 2 cut(s) 374, 448
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 371, 445
BstMWI GCNNNNNNNGC 2 cut(s) 152, 188
BstV1I GCAGC 2 cut(s) 158, 348
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 2 cut(s) 191, 224
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 60, 469
BtsIMutI CAGTG 1 cut(s) 514
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 3 cut(s) 27, 144, 341
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 2 cut(s) 190, 223
CspAI ACCGGT 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 1 cut(s) 436
DdeI CTNAG 4 cut(s) 65, 78, 320, 490
DpnI GATC 2 cut(s) 373, 447
DpnII GATC 2 cut(s) 371, 445
Eco130I CCWWGG 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 439
FaiI YATR 9 cut(s) 19, 32, 56, 73, 75, 302, 333, 419, 437
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 147, 337
FokI GGATG 2 cut(s) 47, 476
Fsp4HI GCNGC 2 cut(s) 147, 337
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 147, 337
HaeIII GGCC 2 cut(s) 191, 224
HapII CCGG 2 cut(s) 408, 496
Hin1II CATG 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 279
HpaII CCGG 2 cut(s) 408, 496
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 4 cut(s) 110, 278, 431, 445
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 238, 473
HpyCH4V TGCA 3 cut(s) 146, 269, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 188
HpyF3I CTNAG 4 cut(s) 65, 78, 320, 490
HpySE526I ACGT 2 cut(s) 238, 473
Hsp92II CATG 1 cut(s) 439
Kzo9I GATC 2 cut(s) 371, 445
LpnPI CCDG 6 cut(s) 184, 206, 255, 325, 421, 509
Lsp1109I GCAGC 2 cut(s) 158, 348
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 215
MaeII ACGT 2 cut(s) 238, 473
MaeIII GTNAC 2 cut(s) 175, 400
MalI GATC 2 cut(s) 373, 447
MboI GATC 2 cut(s) 371, 445
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 445
MluCI AATT 2 cut(s) 12, 310
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 73, 409
MnlI CCTC 5 cut(s) 15, 74, 104, 121, 401
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 408, 496
MunI CAATTG 1 cut(s) 310
MwoI GCNNNNNNNGC 2 cut(s) 152, 188
NdeII GATC 2 cut(s) 371, 445
NlaIII CATG 1 cut(s) 439
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 2 cut(s) 167, 316
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 2 cut(s) 148, 338
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 190, 223
PsuI RGATCY 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 149
SatI GCNGC 2 cut(s) 147, 337
Sau3AI GATC 2 cut(s) 371, 445
Sau96I GGNCC 2 cut(s) 190, 223
SchI GAGTC 1 cut(s) 273
SetI ASST 8 cut(s) 144, 151, 157, 241, 252, 274, 363, 476
SfaNI GCATC 1 cut(s) 454
Sse9I AATT 2 cut(s) 12, 310
SspMI CTAG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 2 cut(s) 241, 476
TasI AATT 2 cut(s) 12, 310
TseI GCWGC 2 cut(s) 146, 336
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.