MD00G1221200.v1.1

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
52360284 .. 52361556
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1221200.v1.1.491

Sequence Viewer

Length: 831 bp
ATGGCATCAGTGAGCCAAGAGCCTTCTCTTTTCTCAACCAGCATTAAGGAGAACATACTTTTTGGGAAGGATGAGGAGGAGGAGGATGGTGGAATGGAGGAAGTGATTGAGGCTGCCAAAGCTAGCAATGCTCATGATTTCATACGTCAATTGCCTCAAGGATACGATACTCAGGTTGGTGAGAGAGGCATGCAACTCTCAGGCGGACAGAAGCAGAGAATAGCCATTGCAAGGGCAGTAATAAAGAAACCCAAAATCCTCCTTCTCGACGAAGCCACCAGCGCATTGGACTCGGAATCTGAAAGGCTCGTCCAAGAGGCACTCCACAAGGCAACCGTGGGCAGAACAACCATAGTCATCGCACACTGCTTGTCCACGATACAAAACGCTGACATTATTGCCGTCATGCAAACCGGTAACGTCATAGAAATTGGCGCACACGAAGAGCTGATTCAACGCCAAAACAGCCTCTACTCCTCATTTGTCTGTCTCCAACAAGCGATAAAAGATCCAGAAGAATGCACCGCACATATGTCCTTTCACTGCAACAATACTAGTAGTACTAGTACTAGTCTTTCATTATTGGCTGATCGACCGAACTCAAGTCCCAGGGTAGCTAGATTTGATAGTACTAGTACTGCCCCACAAAATCCAAACAGTATAAAATCCAAACACACTTCGACGTTTTGGAGATTACTGCCGATGAGTCGTCCGGAGTGGAAGCAAGCGGTTTTGGGGTGTTTGAGTGCGGTTCTGTTCGGAGCAATTCAACCGGTGTTTGGATTCATCCAGGGGGCCATGTTGTCTGTGTTTTTTTGTGACGGGTTATGA

Protein Analysis

277

Amino Acids

30.14

Weight (kDa)

5.53

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 2 - 94 8.8e-15 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 712
AciI CCGC 4 cut(s) 204, 525, 728, 749
AclWI GGATC 1 cut(s) 503
AfaI GTAC 4 cut(s) 562, 568, 631, 637
AfiI CCNNNNNNNGG 2 cut(s) 231, 779
AgeI ACCGGT 2 cut(s) 413, 772
AgsI TTSAA 2 cut(s) 455, 770
AhlI ACTAGT 4 cut(s) 554, 563, 569, 632
AjnI CCWGG 2 cut(s) 608, 789
AluBI AGCT 3 cut(s) 122, 448, 617
AluI AGCT 3 cut(s) 122, 448, 617
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 1 cut(s) 503
Aor13HI TCCGGA 1 cut(s) 712
AoxI GGCC 1 cut(s) 795
ApeKI GCWGC 1 cut(s) 113
AsiGI ACCGGT 2 cut(s) 413, 772
AspLEI GCGC 2 cut(s) 284, 437
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 1 cut(s) 191
AsuNHI GCTAGC 1 cut(s) 122
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 386
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BciT130I CCWGG 2 cut(s) 610, 791
BciVI GTATCC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 494
BcuI ACTAGT 4 cut(s) 554, 563, 569, 632
BfaI CTAG 6 cut(s) 123, 555, 564, 570, 618, 633
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 4 cut(s) 562, 568, 631, 637
Bme1390I CCNGG 2 cut(s) 610, 791
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 2 cut(s) 610, 791
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 141, 586
BsaJI CCNNGG 4 cut(s) 336, 608, 609, 790
BsaWI WCCGGW 3 cut(s) 413, 712, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 779
Bse118I RCCGGY 2 cut(s) 413, 772
Bse3DI GCAATG 2 cut(s) 133, 225
BseAI TCCGGA 1 cut(s) 712
BseBI CCWGG 2 cut(s) 610, 791
BseDI CCNNGG 4 cut(s) 336, 608, 609, 790
BseGI GGATG 3 cut(s) 76, 91, 786
BseLI CCNNNNNNNGG 2 cut(s) 231, 779
BseMI GCAATG 2 cut(s) 133, 225
BseMII CTCAG 2 cut(s) 185, 213
BseRI GAGGAG 4 cut(s) 89, 92, 95, 466
BseXI GCAGC 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 596
BshFI GGCC 1 cut(s) 797
BshTI ACCGGT 2 cut(s) 413, 772
BsiEI CGRYCG 1 cut(s) 596
BsiSI CCGG 3 cut(s) 414, 713, 773
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 2 cut(s) 231, 779
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 1 cut(s) 797
Bsp13I TCCGGA 1 cut(s) 712
Bsp143I GATC 2 cut(s) 508, 589
BspACI CCGC 4 cut(s) 204, 525, 728, 749
BspANI GGCC 1 cut(s) 797
BspCNI CTCAG 2 cut(s) 184, 212
BspEI TCCGGA 1 cut(s) 712
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 796
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 438
BsrDI GCAATG 2 cut(s) 133, 225
BsrFI RCCGGY 2 cut(s) 413, 772
BssAI RCCGGY 2 cut(s) 413, 772
BssECI CCNNGG 4 cut(s) 336, 608, 609, 790
BssMI GATC 2 cut(s) 508, 589
Bst2UI CCWGG 2 cut(s) 610, 791
Bst4CI ACNGT 2 cut(s) 337, 659
Bst6I CTCTTC 1 cut(s) 438
BstC8I GCNNGC 3 cut(s) 124, 191, 726
BstDEI CTNAG 2 cut(s) 171, 199
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 76, 91, 786
BstHHI GCGC 2 cut(s) 284, 437
BstKTI GATC 2 cut(s) 511, 592
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 2 cut(s) 508, 589
BstMCI CGRYCG 1 cut(s) 596
BstMWI GCNNNNNNNGC 4 cut(s) 119, 128, 281, 465
BstNI CCWGG 2 cut(s) 610, 791
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 608, 789
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 508
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 797
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 343
BtsCI GGATG 3 cut(s) 76, 91, 786
BtsI GCAGTG 2 cut(s) 364, 541
BtsIMutI CAGTG 3 cut(s) 15, 364, 541
Cac8I GCNNGC 3 cut(s) 124, 191, 726
CciI TCATGA 1 cut(s) 133
CfoI GCGC 2 cut(s) 284, 437
Cfr10I RCCGGY 2 cut(s) 413, 772
Cfr13I GGNCC 1 cut(s) 795
Csp6I GTAC 4 cut(s) 561, 567, 630, 636
CspAI ACCGGT 2 cut(s) 413, 772
CviAII CATG 4 cut(s) 134, 190, 406, 799
CviQI GTAC 4 cut(s) 561, 567, 630, 636
DdeI CTNAG 2 cut(s) 171, 199
DpnI GATC 2 cut(s) 510, 591
DpnII GATC 2 cut(s) 508, 589
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EciI GGCGGA 1 cut(s) 219
EcoRII CCWGG 2 cut(s) 608, 789
FaeI CATG 4 cut(s) 137, 193, 409, 802
FaqI GGGAC 1 cut(s) 591
FatI CATG 4 cut(s) 133, 189, 405, 798
FauNDI CATATG 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 3 cut(s) 83, 98, 773
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 6 cut(s) 123, 555, 564, 570, 618, 633
GlaI GCGC 2 cut(s) 283, 436
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 797
HapII CCGG 3 cut(s) 414, 713, 773
HhaI GCGC 2 cut(s) 284, 437
Hin1II CATG 4 cut(s) 137, 193, 409, 802
Hin6I GCGC 2 cut(s) 282, 435
HinP1I GCGC 2 cut(s) 282, 435
HinfI GANTC 5 cut(s) 290, 296, 451, 706, 783
HpaII CCGG 3 cut(s) 414, 713, 773
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 3 cut(s) 295, 301, 761
Hpy188III TCNNGA 4 cut(s) 134, 266, 512, 713
Hpy8I GTNNAC 1 cut(s) 375
Hpy99I CGWCG 2 cut(s) 272, 685
HpyAV CCTTC 3 cut(s) 33, 61, 272
HpyCH4III ACNGT 2 cut(s) 337, 659
HpyCH4IV ACGT 3 cut(s) 145, 420, 683
HpyCH4V TGCA 5 cut(s) 193, 230, 409, 522, 546
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 128, 281, 465
HpyF3I CTNAG 2 cut(s) 171, 199
HpySE526I ACGT 3 cut(s) 145, 420, 683
Hsp92II CATG 4 cut(s) 137, 193, 409, 802
HspAI GCGC 2 cut(s) 282, 435
Kpn2I TCCGGA 1 cut(s) 712
Kzo9I GATC 2 cut(s) 508, 589
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 761
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 14
MaeI CTAG 6 cut(s) 123, 555, 564, 570, 618, 633
MaeII ACGT 3 cut(s) 145, 420, 683
MaeIII GTNAC 2 cut(s) 416, 818
MalI GATC 2 cut(s) 510, 591
MboI GATC 2 cut(s) 508, 589
MboII GAAGA 2 cut(s) 455, 527
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 508
MluCI AATT 3 cut(s) 149, 429, 765
MlyI GAGTC 2 cut(s) 284, 715
MmeI TCCRAC 1 cut(s) 517
MroI TCCGGA 1 cut(s) 712
MseI TTAA 1 cut(s) 45
MspI CCGG 3 cut(s) 414, 713, 773
MspR9I CCNGG 2 cut(s) 610, 791
MunI CAATTG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 2 cut(s) 610, 791
MwoI GCNNNNNNNGC 4 cut(s) 119, 128, 281, 465
NdeI CATATG 1 cut(s) 531
NdeII GATC 2 cut(s) 508, 589
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 4 cut(s) 137, 193, 409, 802
NlaIV GGNNCC 1 cut(s) 796
NmuCI GTSAC 1 cut(s) 818
NspI RCATGY 1 cut(s) 193
PaeI GCATGC 1 cut(s) 193
PagI TCATGA 1 cut(s) 133
PasI CCCWGGG 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 438
PctI GAATGC 1 cut(s) 524
PfeI GAWTC 3 cut(s) 296, 451, 783
PinAI ACCGGT 2 cut(s) 413, 772
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 2 cut(s) 284, 714
PpsI GAGTC 2 cut(s) 284, 714
Psp6I CCWGG 2 cut(s) 608, 789
PspGI CCWGG 2 cut(s) 608, 789
PspN4I GGNNCC 1 cut(s) 796
PspPI GGNCC 1 cut(s) 795
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 4 cut(s) 562, 568, 631, 637
RsaNI GTAC 4 cut(s) 561, 567, 630, 636
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 508, 589
Sau96I GGNCC 1 cut(s) 795
ScaI AGTACT 4 cut(s) 562, 568, 631, 637
SchI GAGTC 2 cut(s) 284, 715
ScrFI CCNGG 2 cut(s) 610, 791
SetI ASST 7 cut(s) 124, 148, 177, 423, 450, 619, 686
SfaNI GCATC 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 156, 601
SmoI CTYRAG 2 cut(s) 156, 601
SpeI ACTAGT 4 cut(s) 554, 563, 569, 632
SphI GCATGC 1 cut(s) 193
Sse9I AATT 3 cut(s) 149, 429, 765
SsiI CCGC 4 cut(s) 204, 525, 728, 749
SspMI CTAG 6 cut(s) 123, 555, 564, 570, 618, 633
StyD4I CCNGG 2 cut(s) 608, 789
TaaI ACNGT 2 cut(s) 337, 659
TaiI ACGT 3 cut(s) 148, 423, 686
TaqI TCGA 3 cut(s) 267, 592, 680
TaqII GACCGA 1 cut(s) 610
TasI AATT 3 cut(s) 149, 429, 765
TatI WGTACW 4 cut(s) 560, 566, 629, 635
TfiI GAWTC 3 cut(s) 296, 451, 783
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 3 cut(s) 15, 371, 548
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 3 cut(s) 130, 567, 775
TspRI CASTG 3 cut(s) 15, 371, 548
XceI RCATGY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XspI CTAG 6 cut(s) 123, 555, 564, 570, 618, 633
ZrmI AGTACT 4 cut(s) 562, 568, 631, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.