FvH4_3g21880

Multidrug pheromone exporter, MDR family, ABC transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000317
Physical Location & Seq
Forward (+)
14940617 .. 14945503
4887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21880.t1

Sequence Viewer

Length: 3801 bp
ATGGGGCTCAAAAACAGCATGTTTCGCTATGCAGACGTCACAGACAAGTTGCTGATGTTCTTTGGGACTCTAGGAAGCATTGGTGATGGATTGCAGAACCCTCTCATGATGTTCATTCTTAGTGAGGTGATCAACTCCTATGGAAGTTCCAGTGGTGCTTTGACTAATGCTGATGTAGACAAGTTTGCACTCAGGCTATTTTATGTTGCTATTGGAGTTGGACTCGCTGCATTTGTTGAAGGGTTATGTTGGGCAAGGACTGCGGAGAGGCAGACTTCGAGAATGAGGATGAAGTATCTCAATTCTGTTCTCAAACAAGAAGTTTCGTTCTTTGACACCCAGACTGCTGGTTCTTCGACAACATTCCAAGTTATTTCAATCATCTCCTCCGATGCCAATGCAGTCCAAGTTGCTTTATGCGAGAAGATACCGGACTGCCTAGCGTACATGTCAACTTTCTTCTTCTGCCATATATTTGCCTTCACACTTTCCTGGCGGCTGACATTGGCGGCGATGCCACTTTCAATCATGTTCATAGCTCCAGGGCTTTTCTTTGGAAGTATATTGATGGGCCTTGTAATGAAGGGGATTGGGGCTTATGGAGTTGCAGGAGGGATTGCTGAACAAGCAATTTCTTCAGTAAGAACTGTATATTCATATGTTGGAGAGAACCAAACACTAAAGAGGTTTAGCACTGCACTTCAGGCTGTCACAAAAATTGGAATCAAGGTGGGTTTAGTGAAAGGAGTCCTGATGGGAAGCATGGGAATGATTTATGTTGGTTGGGGTTTTCAGGCATGGGTTGGGATTTATTTGGTTACTCAAAAAGGAGAAGATGGAGGACATGTCTTTGTCGCCGGTTTCAATGTCCTCATGGGAGGCCTGAGTATTTTAAGTGCACTTCCTAATTTAACTGCCATCACAGAGGCATTAGCAGCTACAACACGAATCCTTGAAATGATTGACCGTGTTCCTAGTATTGAAACTGAAGACAGGAAAGGGAAGGCTTTGTCACATGTGAGAGGAGAAATTGAATTCCAAGACATTTACTTCAGTTACCCATCAAGACCTGATAGCCAAATCTTACAAGGCTTGAATCTTAAGATTCCGGCTGGTAAGAGTGTAGGTCTAGTTGGGGGAAGTGGCTCTGGCAAGTCGACAATCATTTCATTGATCGAAAGATTTTATGACCCGGTTGAAGGAGAAATACTCTTGGATGGACATGCAATCAGAAGACTTCAGCCGAAATGGTTGAGATCCCAAATGGGTTTAGTTAATCAGGAACCTGTTCTGTTTGCAACTTCCATAAGGGAGAACATACTTTTTGGAAAGGAAGGTGCTTCAATGGAAGAAATAACAAATGCAGCTAAAGCTGCAAATGCACATGACTTCATTGTCAAGTTACCAGATGGATATGAAACTCAGGCTGGTCAATTTGGATTCCAACTGTCTGGTGGGCAAAAGCAGCGAATAGCTATAGCAAGAGCTCTGCTCAGGGATCCCAAAATCTTACTTCTAGATGAAGCAACTAGTGCATTGGATGCACAGTCTGAAAGACTTGTTCAGGAGGCAATTGATCAAGCATCGAAAGGGAGGACAACAGTTATTATAGCGCATCGCCTGTCAACAATCCGAACAGCAAACTTGATTGTGGTTCTTCAAGCTGGGAAAGTAATCGAATCAGGCTCGCACAATGAGCTAATGAGAAAGAATGGGGAGCAAGGAGGTGAATACTTCAAGATGGTCCAGTTGCAGCAAACGGCAGCACAAAATGAAGCTCCTGAAGATAGTCAATCATATGAAAAACCTCGGCGTAGGAGAAGTGTTGCACCGAGCCCCATTAGTGCCCGCTCCAGTGCTCATAACACTCCAGCAATATACTCCTTCAGTGGTACTGGAATGTCCATCTCTATGGGAACCCCCATGTCCATTGGGACACCCAGGTCCAACATGGGCACACCTTATTCGTTCTCTGTCCAATACGATCCTGATGATGGAAGTTATGATGATGACTTAAAGAACTCAACTTATCCTCCTCCTTCTCAATGGCGCCTGCTGAAAATGAATGCACCAGAGTGGGGACAAGCATTACTTGGATGCTTGGGTGCAATAGGTTCTGGAGCAGTACAACCTATCAATGCGTACTGTGTAGGCTCACTTATATCAATCTACTTCCTCCAGGATAAATCAGAAATCAAGTCCCAATCGAGAGTCTTGTCCTTTGTTTTCATAGGCATTGGTGTTTTCAACTTCTTCACCAATCTCATCCAACACTATAACTTTGCAATCATGGGAGAGAAGTTGACCACAAGGGTAAGAGAGCAACTGCTTGAAAAGCTTTTGACATTCGAAATTGGGTGGTTTGATGATGATGAGAACACAAGTGCAGCTATCTGTGCAAGGCTAGCCACTGAAGTAAACATGGTTCGATCTCTTGTTGGTGACAGAATGTCATTGCTGGTCCAAGCAGTTTTCGGGGCTACCTTTGCTTACACAGTAGGACTTGTGCTAACATGGAGACTATCCCTTGTGATGATAGCAGTGCAGCCCCTAGTCATTGGGAGCTTTTATGCAAGGAGTATCTTGATGAAGAGTATGGGTGAGAAGGCGAGAAAGGCTCAAAAAGAAGGAAGCCAATTGGCAAGTGAAGCTGTTATTAACCACAGAACTATAACAGCCTTTTCTTCACAGAAAAAGATTATGGGGCTGTTTGGTGCAACCTTGGCTGGTCCTAAGAAAGAGAGTATCAAGCAATCCTATGTTTCTGGTGCTGGCTTGTTTAGCTCCCAATTCTTTAACACGGCGGCTTCAGCTTTAGCCTACTGGTATGGTGGGAGGCTACTTGTGCAAGGGTTGATAACCTCCAAGGAACTTTTCCAGGCCTTCTTGATATTACTGTTTACTGCTTATATTATTGCAGAAGCTGGGAGCATGACTTCTGATATATCTAAAGGGGCCAGTGCCATTCAAGCAGTTTTTGCCATTTTAGATAGGAAAACTGAGATTGATCCTGATAACAGATGGGGACTGGAGATTAAGAGGAGGATAAAGGGGCGCGTCGAGTTCAAAACTGTTTTCTTTGCATATCCAACAAGACCTGAGCAGATGATTCTTAAGGGACTGAGCCTCAGAATTGATGCAGGCAAAACAGTGGCACTAGTTGGCCAGAGTGGTTCGGGCAAATCCACCATTATTGGGCTGATTGAGAGGTTCTATGATCCAATGAAGGGATCAGTATTTGTAGATGAGCAGGATATTAAGAACTACAACTTGAGAATGCTGAGGGCACATGTAGCCTTGGTTAGTCAGGAGCCAACTTTGTTTGCTGGAACTATCCGTGAAAATATCGCCTATGGTAAAGAGAATTCGAAGGAATCTGAGATAAAGAGGGCTGCAGTTCTGGCAAATGCTCATGAATTTATAAGTGGAATGAATGATGGTTATAACACATACTGTGGAGAGAGAGGAGTTCAGCTATCAGGAGGCCAGAAACAAAGGATAGCACTAGCCCGGGCAATTCTGAAGAATCCATCAATCCTCCTGCTGGATGAGGCCACAAGTGCACTTGACAGCGTGTCAGAAAACGCAGTTCAAGAAGCACTTGAGAAGATGATGGTCAACAGAACATGCATAGTCATTGCTCATCGGCTATCGACAATTCAGAAGGCCAACTCCATTGCTGTGATCAAGAATGGAAAGGTTGAAGAACAAGGTTCACATAATGATCTGATTTCATTAGGGCGCAATGGAGCATACTACTCACTGATAAAGCTACAAACTGGTAGCTCACCTCCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1267

Amino Acids

138.1

Weight (kDa)

9.08

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 19 - 293 3.3e-39 ABC transporter transmembrane region
ABC_tran PF00005 362 - 511 3.5e-33 ABC transporter
ABC_membrane PF00664 698 - 969 3e-46 ABC transporter transmembrane region
ABC_tran PF00005 1038 - 1187 1.5e-32 ABC transporter
SMC_N PF02463 1051 - 1230 1e-05 RecF/RecN/SMC N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3422, 3444
AasI GACNNNNNNGTC 2 cut(s) 1394, 1942
AatII GACGTC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 2049
AccBSI CCGCTC 1 cut(s) 1851
AccI GTMKAC 2 cut(s) 177, 1157
AccII CGCG 1 cut(s) 3057
AciI CCGC 5 cut(s) 263, 496, 509, 1849, 2804
AclWI GGATC 7 cut(s) 1251, 1493, 1506, 1979, 3002, 3212, 3238
AcoI YGGCCR 1 cut(s) 3163
AcsI RAATTY 3 cut(s) 1034, 3364, 3416
AcyI GRCGYC 2 cut(s) 36, 2050
AfaI GTAC 4 cut(s) 446, 1894, 2127, 2144
AfiI CCNNNNNNNGG 6 cut(s) 1199, 1994, 2078, 3195, 3227, 3544
AflII CTTAAG 2 cut(s) 1100, 3113
AflIII ACRYGT 4 cut(s) 447, 844, 1015, 3289
AhdI GACNNNNNGTC 2 cut(s) 2449, 3574
AhlI ACTAGT 2 cut(s) 1529, 3157
AjnI CCWGG 5 cut(s) 491, 541, 1940, 2178, 2877
AjuI GAANNNNNNNTTGG 2 cut(s) 2858, 2890
AleI CACNNNNGTG 1 cut(s) 2074
Alw21I GWGCWC 4 cut(s) 901, 1489, 1861, 3565
Alw26I GTCTC 1 cut(s) 2512
Alw44I GTGCAC 2 cut(s) 897, 3561
AlwI GGATC 7 cut(s) 1251, 1493, 1506, 1979, 3002, 3212, 3238
AlwNI CAGNNNCTG 1 cut(s) 2924
Ama87I CYCGRG 1 cut(s) 3510
AoxI GGCC 8 cut(s) 571, 880, 2880, 2955, 3163, 3484, 3552, 3666
ApaLI GTGCAC 2 cut(s) 897, 3561
ApoI RAATTY 3 cut(s) 1034, 3364, 3416
Asp700I GAANNNNTTC 1 cut(s) 1287
AspLEI GCGC 4 cut(s) 1615, 2052, 3057, 3744
AspS9I GGNCC 6 cut(s) 571, 1744, 1944, 2461, 2729, 2955
AsuC2I CCSGG 3 cut(s) 1193, 3511, 3512
AsuHPI GGTGA 7 cut(s) 95, 139, 1739, 2248, 2453, 2612, 3780
AsuII TTCGAA 2 cut(s) 2349, 3368
AsuNHI GCTAGC 1 cut(s) 2404
AvaI CYCGRG 1 cut(s) 3510
AvaII GGWCC 4 cut(s) 1744, 1944, 2461, 2729
BaeGI GKGCMC 5 cut(s) 901, 1849, 1958, 3289, 3565
BalI TGGCCA 1 cut(s) 3165
BamHI GGATCC 1 cut(s) 1498
BanI GGYRCC 1 cut(s) 2049
BanII GRGCYC 3 cut(s) 9, 1489, 1838
BarI GAAGNNNNNNTAC 2 cut(s) 1191, 1223
BbsI GAAGAC 2 cut(s) 996, 1240
Bbv12I GWGCWC 4 cut(s) 901, 1489, 1861, 3565
BbvCI CCTCAGC 1 cut(s) 3281
BceAI ACGGC 2 cut(s) 1776, 2817
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 5 cut(s) 493, 543, 1942, 2180, 2879
BclI TGATCA 3 cut(s) 129, 1576, 3684
BcnI CCSGG 3 cut(s) 1193, 3511, 3512
BcoDI GTCTC 1 cut(s) 2512
BcuI ACTAGT 2 cut(s) 1529, 3157
BfmI CTRYAG 2 cut(s) 1476, 3393
BfoI RGCGCY 1 cut(s) 2053
BfrI CTTAAG 2 cut(s) 1100, 3113
Bme1390I CCNGG 8 cut(s) 493, 543, 1193, 1942, 2180, 2879, 3511, 3512
Bme18I GGWCC 4 cut(s) 1744, 1944, 2461, 2729
BmeRI GACNNNNNGTC 2 cut(s) 2449, 3574
BmeT110I CYCGRG 1 cut(s) 3510
BmgT120I GGNCC 6 cut(s) 571, 1744, 1944, 2461, 2729, 2955
BmiI GGNNCC 6 cut(s) 1284, 1500, 1918, 2051, 2956, 3312
BmrFI CCNGG 8 cut(s) 493, 543, 1193, 1942, 2180, 2879, 3511, 3512
BmsI GCATC 7 cut(s) 382, 504, 1531, 1592, 1624, 2087, 3127
BmtI GCTAGC 1 cut(s) 2408
BpiI GAAGAC 2 cut(s) 996, 1240
BplI GAGNNNNNCTC 8 cut(s) 207, 239, 1194, 1226, 1476, 1508, 2602, 2634
BpmI CTGGAG 6 cut(s) 525, 1837, 1854, 2139, 2162, 3050
Bpu10I CCTNAGC 3 cut(s) 1493, 3099, 3281
Bpu14I TTCGAA 2 cut(s) 2349, 3368
BpuEI CTTGAG 2 cut(s) 3292, 3623
BpuMI CCSGG 3 cut(s) 1193, 3511, 3512
BsaHI GRCGYC 2 cut(s) 36, 2050
BsaJI CCNNGG 8 cut(s) 542, 1808, 1940, 2721, 2865, 3297, 3510, 3794
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 4 cut(s) 831, 861, 2017, 2047
Bsc4I CCNNNNNNNGG 6 cut(s) 1199, 1994, 2078, 3195, 3227, 3544
Bse118I RCCGGY 1 cut(s) 857
Bse1I ACTGG 8 cut(s) 150, 1747, 1854, 1900, 2828, 2958, 3033, 3784
Bse3DI GCAATG 4 cut(s) 2453, 3636, 3675, 3751
BseBI CCWGG 5 cut(s) 493, 543, 1942, 2180, 2879
BseDI CCNNGG 8 cut(s) 542, 1808, 1940, 2721, 2865, 3297, 3510, 3794
BseGI GGATG 6 cut(s) 294, 1222, 1546, 2102, 2265, 3553
BseLI CCNNNNNNNGG 6 cut(s) 1199, 1994, 2078, 3195, 3227, 3544
BseMI GCAATG 4 cut(s) 2453, 3636, 3675, 3751
BseNI ACTGG 8 cut(s) 150, 1747, 1854, 1900, 2828, 2958, 3033, 3784
BseRI GAGGAG 5 cut(s) 376, 1038, 2025, 3055, 3480
BseSI GKGCMC 5 cut(s) 901, 1849, 1958, 3289, 3565
BseYI CCCAGC 2 cut(s) 1664, 2924
BsgI GTGCAG 3 cut(s) 681, 2406, 2564
Bsh1236I CGCG 1 cut(s) 3057
BshFI GGCC 8 cut(s) 573, 882, 2882, 2957, 3165, 3486, 3554, 3668
BshNI GGYRCC 1 cut(s) 2049
BsiHKAI GWGCWC 4 cut(s) 901, 1489, 1861, 3565
BsiHKCI CYCGRG 1 cut(s) 3510
BsiSI CCGG 5 cut(s) 431, 858, 1109, 1193, 3511
BslFI GGGAC 6 cut(s) 79, 1948, 2094, 2185, 3039, 3132
BslI CCNNNNNNNGG 6 cut(s) 1199, 1994, 2078, 3195, 3227, 3544
BsmAI GTCTC 1 cut(s) 2512
BsmFI GGGAC 6 cut(s) 79, 1948, 2094, 2185, 3039, 3132
BsmI GAATGC 2 cut(s) 2071, 3282
BsnI GGCC 8 cut(s) 573, 882, 2882, 2957, 3165, 3486, 3554, 3668
BsoBI CYCGRG 1 cut(s) 3510
Bsp119I TTCGAA 2 cut(s) 2349, 3368
Bsp1286I GDGCHC 9 cut(s) 9, 901, 1489, 1838, 1849, 1861, 1958, 3289, 3565
BspACI CCGC 5 cut(s) 263, 496, 509, 1849, 2804
BspANI GGCC 8 cut(s) 573, 882, 2882, 2957, 3165, 3486, 3554, 3668
BspFNI CGCG 1 cut(s) 3057
BspHI TCATGA 2 cut(s) 105, 3412
BspLI GGNNCC 6 cut(s) 1284, 1500, 1918, 2051, 2956, 3312
BspMAI CTGCAG 1 cut(s) 3397
BspOI GCTAGC 1 cut(s) 2408
BspPI GGATC 7 cut(s) 1251, 1493, 1506, 1979, 3002, 3212, 3238
BspT104I TTCGAA 2 cut(s) 2349, 3368
BspT107I GGYRCC 1 cut(s) 2049
BspTI CTTAAG 2 cut(s) 1100, 3113
BsrBI CCGCTC 1 cut(s) 1851
BsrDI GCAATG 4 cut(s) 2453, 3636, 3675, 3751
BsrFI RCCGGY 1 cut(s) 857
BsrI ACTGG 8 cut(s) 150, 1747, 1854, 1900, 2828, 2958, 3033, 3784
BssAI RCCGGY 1 cut(s) 857
BssECI CCNNGG 8 cut(s) 542, 1808, 1940, 2721, 2865, 3297, 3510, 3794
BssNI GRCGYC 2 cut(s) 36, 2050
BssT1I CCWWGG 4 cut(s) 2721, 2865, 3297, 3794
Bst2UI CCWGG 5 cut(s) 493, 543, 1942, 2180, 2879
Bst6I CTCTTC 1 cut(s) 2585
BstACI GRCGYC 2 cut(s) 36, 2050
BstAFI CTTAAG 2 cut(s) 1100, 3113
BstAPI GCANNNNNTGC 4 cut(s) 260, 1532, 1541, 2978
BstBI TTCGAA 2 cut(s) 2349, 3368
BstC8I GCNNGC 6 cut(s) 1688, 1849, 2054, 2406, 2773, 3142
BstF5I GGATG 6 cut(s) 294, 1222, 1546, 2102, 2265, 3553
BstFNI CGCG 1 cut(s) 3057
BstH2I RGCGCY 1 cut(s) 2053
BstHHI GCGC 4 cut(s) 1615, 2052, 3057, 3744
BstMAI GTCTC 1 cut(s) 2512
BstNI CCWGG 5 cut(s) 493, 543, 1942, 2180, 2879
BstNSI RCATGY 7 cut(s) 22, 451, 848, 1019, 1226, 3293, 3630
BstSCI CCNGG 8 cut(s) 491, 541, 1191, 1940, 2178, 2877, 3509, 3510
BstSFI CTRYAG 2 cut(s) 1476, 3393
BstSLI GKGCMC 5 cut(s) 901, 1849, 1958, 3289, 3565
BstUI CGCG 1 cut(s) 3057
BstV2I GAAGAC 2 cut(s) 996, 1240
BstX2I RGATCY 2 cut(s) 1256, 1498
BstXI CCANNNNNNTGG 3 cut(s) 347, 1451, 1912
BstYI RGATCY 2 cut(s) 1256, 1498
BsuRI GGCC 8 cut(s) 573, 882, 2882, 2957, 3165, 3486, 3554, 3668
BtgZI GCGATG 2 cut(s) 527, 1601
BtsCI GGATG 6 cut(s) 294, 1222, 1546, 2102, 2265, 3553
BtsI GCAGTG 2 cut(s) 693, 2547
BtsIMutI CAGTG 9 cut(s) 157, 693, 1861, 1894, 2409, 2547, 2965, 3156, 3761
Cac8I GCNNGC 6 cut(s) 1688, 1849, 2054, 2406, 2773, 3142
CaiI CAGNNNCTG 1 cut(s) 2924
CciI TCATGA 2 cut(s) 105, 3412
CfoI GCGC 4 cut(s) 1615, 2052, 3057, 3744
Cfr10I RCCGGY 1 cut(s) 857
Cfr13I GGNCC 6 cut(s) 571, 1744, 1944, 2461, 2729, 2955
Cfr9I CCCGGG 1 cut(s) 3510
CseI GACGC 1 cut(s) 3046
Csp6I GTAC 4 cut(s) 445, 1893, 2126, 2143
CspCI CAANNNNNGTGG 2 cut(s) 3175, 3210
CviQI GTAC 4 cut(s) 445, 1893, 2126, 2143
DinI GGCGCC 1 cut(s) 2051
DrdI GACNNNNNNGTC 2 cut(s) 1394, 1942
DriI GACNNNNNGTC 2 cut(s) 2449, 3574
DseDI GACNNNNNNGTC 2 cut(s) 1394, 1942
EaeI YGGCCR 1 cut(s) 3163
Eam1104I CTCTTC 1 cut(s) 2585
Eam1105I GACNNNNNGTC 2 cut(s) 2449, 3574
EarI CTCTTC 1 cut(s) 2585
Ecl136II GAGCTC 1 cut(s) 1487
Eco130I CCWWGG 4 cut(s) 2721, 2865, 3297, 3794
Eco147I AGGCCT 2 cut(s) 882, 2882
Eco24I GRGCYC 3 cut(s) 9, 1489, 1838
Eco47I GGWCC 4 cut(s) 1744, 1944, 2461, 2729
Eco53kI GAGCTC 1 cut(s) 1487
Eco88I CYCGRG 1 cut(s) 3510
EcoICRI GAGCTC 1 cut(s) 1487
EcoRI GAATTC 2 cut(s) 1034, 3364
EcoRII CCWGG 5 cut(s) 491, 541, 1940, 2178, 2877
EcoT14I CCWWGG 4 cut(s) 2721, 2865, 3297, 3794
EcoT22I ATGCAT 1 cut(s) 3632
EcoT38I GRGCYC 3 cut(s) 9, 1489, 1838
EgeI GGCGCC 1 cut(s) 2051
EheI GGCGCC 1 cut(s) 2051
ErhI CCWWGG 4 cut(s) 2721, 2865, 3297, 3794
FalI AAGNNNNNCTT 4 cut(s) 2076, 2108, 3585, 3617
FaqI GGGAC 6 cut(s) 79, 1948, 2094, 2185, 3039, 3132
FauI CCCGC 1 cut(s) 1856
FauNDI CATATG 2 cut(s) 658, 1798
FbaI TGATCA 3 cut(s) 129, 1576, 3684
FblI GTMKAC 2 cut(s) 177, 1157
FokI GGATG 6 cut(s) 301, 1229, 1553, 2109, 2252, 3560
FriOI GRGCYC 3 cut(s) 9, 1489, 1838
GlaI GCGC 4 cut(s) 1614, 2051, 3056, 3743
GsaI CCCAGC 2 cut(s) 1668, 2928
GsuI CTGGAG 6 cut(s) 525, 1837, 1854, 2139, 2162, 3050
HaeII RGCGCY 1 cut(s) 2053
HaeIII GGCC 8 cut(s) 573, 882, 2882, 2957, 3165, 3486, 3554, 3668
HapII CCGG 5 cut(s) 431, 858, 1109, 1193, 3511
HgaI GACGC 1 cut(s) 3046
HhaI GCGC 4 cut(s) 1615, 2052, 3057, 3744
Hin1I GRCGYC 2 cut(s) 36, 2050
Hin6I GCGC 4 cut(s) 1613, 2050, 3055, 3742
HinP1I GCGC 4 cut(s) 1613, 2050, 3055, 3742
HincII GTYRAC 5 cut(s) 453, 1158, 1626, 2304, 3619
HindII GTYRAC 5 cut(s) 453, 1158, 1626, 2304, 3619
HindIII AAGCTT 1 cut(s) 2336
HpaII CCGG 5 cut(s) 431, 858, 1109, 1193, 3511
HphI GGTGA 7 cut(s) 95, 139, 1739, 2248, 2453, 2612, 3780
Hpy99I CGWCG 1 cut(s) 3062
HpyCH4IV ACGT 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 2 cut(s) 36, 2050
HspAI GCGC 4 cut(s) 1613, 2050, 3055, 3742
KasI GGCGCC 1 cut(s) 2049
Ksp22I TGATCA 3 cut(s) 129, 1576, 3684
LweI GCATC 7 cut(s) 382, 504, 1531, 1592, 1624, 2087, 3127
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 7 cut(s) 37, 709, 817, 1011, 1055, 1401, 2441
MbiI CCGCTC 1 cut(s) 1851
MfeI CAATTG 2 cut(s) 1572, 2636
MflI RGATCY 2 cut(s) 1256, 1498
MhlI GDGCHC 9 cut(s) 9, 901, 1489, 1838, 1849, 1861, 1958, 3289, 3565
MlsI TGGCCA 1 cut(s) 3165
MluNI TGGCCA 1 cut(s) 3165
Mly113I GGCGCC 1 cut(s) 2050
MlyI GAGTC 4 cut(s) 61, 216, 756, 2220
MmeI TCCRAC 6 cut(s) 199, 643, 1468, 1971, 2293, 3113
Mox20I TGGCCA 1 cut(s) 3165
Mph1103I ATGCAT 1 cut(s) 3632
MroXI GAANNNNTTC 1 cut(s) 1287
MscI TGGCCA 1 cut(s) 3165
MslI CAYNNNNRTG 4 cut(s) 767, 1910, 2074, 3680
Msp20I TGGCCA 1 cut(s) 3165
MspCI CTTAAG 2 cut(s) 1100, 3113
MspI CCGG 5 cut(s) 431, 858, 1109, 1193, 3511
MspR9I CCNGG 8 cut(s) 493, 543, 1193, 1942, 2180, 2879, 3511, 3512
MunI CAATTG 2 cut(s) 1572, 2636
Mva1269I GAATGC 2 cut(s) 2071, 3282
MvaI CCWGG 5 cut(s) 493, 543, 1942, 2180, 2879
MvnI CGCG 1 cut(s) 3057
NarI GGCGCC 1 cut(s) 2050
NciI CCSGG 3 cut(s) 1193, 3511, 3512
NdeI CATATG 2 cut(s) 658, 1798
NheI GCTAGC 1 cut(s) 2404
NlaIV GGNNCC 6 cut(s) 1284, 1500, 1918, 2051, 2956, 3312
NmeAIII GCCGAG 1 cut(s) 1789
NmuCI GTSAC 4 cut(s) 37, 709, 1011, 2441
NsiI ATGCAT 1 cut(s) 3632
NspI RCATGY 7 cut(s) 22, 451, 848, 1019, 1226, 3293, 3630
NspV TTCGAA 2 cut(s) 2349, 3368
OliI CACNNNNGTG 1 cut(s) 2074
PagI TCATGA 2 cut(s) 105, 3412
PceI AGGCCT 2 cut(s) 882, 2882
PciI ACATGT 4 cut(s) 447, 844, 1015, 3289
PctI GAATGC 2 cut(s) 2071, 3282
PdmI GAANNNNTTC 1 cut(s) 1287
PfeI GAWTC 9 cut(s) 723, 948, 1096, 1105, 1440, 1679, 3109, 3374, 3526
PfoI TCCNGGA 1 cut(s) 2178
PleI GAGTC 4 cut(s) 61, 216, 755, 2219
PluTI GGCGCC 1 cut(s) 2053
PpsI GAGTC 4 cut(s) 61, 216, 755, 2219
PscI ACATGT 4 cut(s) 447, 844, 1015, 3289
PsiI TTATAA 2 cut(s) 3422, 3444
Psp124BI GAGCTC 1 cut(s) 1489
Psp6I CCWGG 5 cut(s) 491, 541, 1940, 2178, 2877
PspFI CCCAGC 2 cut(s) 1664, 2924
PspGI CCWGG 5 cut(s) 491, 541, 1940, 2178, 2877
PspN4I GGNNCC 6 cut(s) 1284, 1500, 1918, 2051, 2956, 3312
PspPI GGNCC 6 cut(s) 571, 1744, 1944, 2461, 2729, 2955
PsrI GAACNNNNNNTAC 2 cut(s) 2409, 2441
PstI CTGCAG 1 cut(s) 3397
PstNI CAGNNNCTG 1 cut(s) 2924
PsuI RGATCY 2 cut(s) 1256, 1498
RsaI GTAC 4 cut(s) 446, 1894, 2127, 2144
RsaNI GTAC 4 cut(s) 445, 1893, 2126, 2143
RseI CAYNNNNRTG 4 cut(s) 767, 1910, 2074, 3680
SacI GAGCTC 1 cut(s) 1489
SalI GTCGAC 1 cut(s) 1156
Sau96I GGNCC 6 cut(s) 571, 1744, 1944, 2461, 2729, 2955
SchI GAGTC 4 cut(s) 61, 216, 756, 2220
ScrFI CCNGG 8 cut(s) 493, 543, 1193, 1942, 2180, 2879, 3511, 3512
SduI GDGCHC 9 cut(s) 9, 901, 1489, 1838, 1849, 1861, 1958, 3289, 3565
SfaNI GCATC 7 cut(s) 382, 504, 1531, 1592, 1624, 2087, 3127
SfcI CTRYAG 2 cut(s) 1476, 3393
SfoI GGCGCC 1 cut(s) 2051
SfuI TTCGAA 2 cut(s) 2349, 3368
SinI GGWCC 4 cut(s) 1744, 1944, 2461, 2729
SmaI CCCGGG 1 cut(s) 3512
SmiMI CAYNNNNRTG 4 cut(s) 767, 1910, 2074, 3680
SmlI CTYRAG 4 cut(s) 1100, 3113, 3271, 3602
SmoI CTYRAG 4 cut(s) 1100, 3113, 3271, 3602
SpeI ACTAGT 2 cut(s) 1529, 3157
SrfI GCCCGGGC 1 cut(s) 3512
SseBI AGGCCT 2 cut(s) 882, 2882
SsiI CCGC 5 cut(s) 263, 496, 509, 1849, 2804
SspDI GGCGCC 1 cut(s) 2049
SstI GAGCTC 1 cut(s) 1489
StuI AGGCCT 2 cut(s) 882, 2882
StyD4I CCNGG 8 cut(s) 491, 541, 1191, 1940, 2178, 2877, 3509, 3510
StyI CCWWGG 4 cut(s) 2721, 2865, 3297, 3794
TaiI ACGT 1 cut(s) 39
TatI WGTACW 1 cut(s) 2125
TauI GCSGC 3 cut(s) 499, 512, 2807
TfiI GAWTC 9 cut(s) 723, 948, 1096, 1105, 1440, 1679, 3109, 3374, 3526
TscAI CASTG 9 cut(s) 157, 700, 1861, 1894, 2416, 2547, 2965, 3156, 3768
TseFI GTSAC 4 cut(s) 37, 709, 1011, 2441
Tsp45I GTSAC 4 cut(s) 37, 709, 1011, 2441
TspGWI ACGGA 1 cut(s) 3326
TspMI CCCGGG 1 cut(s) 3510
TspRI CASTG 9 cut(s) 157, 700, 1861, 1894, 2416, 2547, 2965, 3156, 3768
Vha464I CTTAAG 2 cut(s) 1100, 3113
VneI GTGCAC 2 cut(s) 897, 3561
VpaK11BI GGWCC 4 cut(s) 1744, 1944, 2461, 2729
XapI RAATTY 3 cut(s) 1034, 3364, 3416
XbaI TCTAGA 1 cut(s) 1516
XceI RCATGY 7 cut(s) 22, 451, 848, 1019, 1226, 3293, 3630
XcmI CCANNNNNNNNNTGG 2 cut(s) 1451, 1948
XmaI CCCGGG 1 cut(s) 3510
XmiI GTMKAC 2 cut(s) 177, 1157
XmnI GAANNNNTTC 1 cut(s) 1287
ZraI GACGTC 1 cut(s) 37
Zsp2I ATGCAT 1 cut(s) 3632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.