Rh2DG638400

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000317
Physical Location & Seq
Forward (+)
86649759 .. 86650512
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG638400.1

Sequence Viewer

Length: 573 bp
ATGTGGGATCTGGCCATTGTGGGACTCCCACTTGCTTTGCTTCTGATACTTCCCTGTTGGATCTGCGGAAGAAGTTTAACAGGATTAGCAAGAAAGAGAAGAGAAGAATGCATCAAGGCTGGATCAATAGCAGAGCAGGCAATATCATCCATTAGAACAGTTTATGCATTTACTGGCGAGAACAACACTATATACCAATTCTCTGAAGCTCTACGAGGGACCATAAAGCTGGGGTTGAAGCAGGGCATGATTAAAGGTTTGGCCATTGGTAGCAGTACTGGCACAGCACTTGCCAATTGGGCTGTCATGTCTTATTATGGTAGCAGAAAGGTCATATCCCATGGTGCTCTAGGAGGGGCTATTTCAGCAGTTGGCCATTTGATGGTCCATGGAGGAGCGGAAATGGGTGCTGCTTTATCGAATTTGAAGTACATTGCAGAAGCATGTTCAGCTGGGGATCATATCCTGGAGATTATTAATCGAGTTCCAGAGAATGATTTAGACAACATGGAAGGCGGAATTTTGGAGCATGTTACAAGCAAAGTTGAATTTAATCATGTGAAGTTTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

190

Amino Acids

20.26

Weight (kDa)

7.72

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 2 - 114 4.2e-16 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AccBSI CCGCTC 1 cut(s) 398
AciI CCGC 3 cut(s) 66, 398, 516
AclWI GGATC 4 cut(s) 15, 68, 130, 465
AcoI YGGCCR 3 cut(s) 12, 261, 373
AcsI RAATTY 3 cut(s) 421, 519, 548
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 2 cut(s) 277, 431
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 3 cut(s) 238, 427, 548
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 3 cut(s) 209, 229, 452
AluI AGCT 3 cut(s) 209, 229, 452
Alw21I GWGCWC 1 cut(s) 349
AlwI GGATC 4 cut(s) 15, 68, 130, 465
AoxI GGCC 3 cut(s) 12, 261, 373
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 3 cut(s) 421, 519, 548
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 219, 385
AvaII GGWCC 2 cut(s) 219, 385
BalI TGGCCA 3 cut(s) 14, 263, 375
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 397
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 467
BfaI CTAG 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 467
Bme18I GGWCC 2 cut(s) 219, 385
BmgT120I GGNCC 2 cut(s) 219, 385
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 340, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 178, 283
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 340, 388
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 432
BseNI ACTGG 2 cut(s) 178, 283
BseRI GAGGAG 1 cut(s) 408
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 2 cut(s) 229, 452
BshFI GGCC 3 cut(s) 14, 263, 375
BsiHKAI GWGCWC 1 cut(s) 349
BslFI GGGAC 2 cut(s) 36, 232
BslI CCNNNNNNNGG 1 cut(s) 382
BsmFI GGGAC 2 cut(s) 36, 232
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 3 cut(s) 14, 263, 375
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 4 cut(s) 7, 60, 122, 457
Bsp19I CCATGG 2 cut(s) 340, 388
BspACI CCGC 3 cut(s) 66, 398, 516
BspANI GGCC 3 cut(s) 14, 263, 375
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 4 cut(s) 15, 68, 130, 465
BsrBI CCGCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 2 cut(s) 178, 283
BssECI CCNNGG 2 cut(s) 340, 388
BssMI GATC 4 cut(s) 7, 60, 122, 457
BssT1I CCWWGG 2 cut(s) 340, 388
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 138
BstDSI CCRYGG 2 cut(s) 340, 388
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 4 cut(s) 10, 63, 125, 460
BstMBI GATC 4 cut(s) 7, 60, 122, 457
BstMWI GCNNNNNNNGC 5 cut(s) 137, 279, 299, 365, 449
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 2 cut(s) 447, 533
BstSCI CCNGG 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 2 cut(s) 7, 60
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 2 cut(s) 7, 60
BsuRI GGCC 3 cut(s) 14, 263, 375
BtgI CCRYGG 2 cut(s) 340, 388
BtsCI GGATG 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 219, 385
Csp6I GTAC 2 cut(s) 276, 430
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 8 cut(s) 247, 307, 341, 389, 444, 508, 530, 557
CviJI RGCY 9 cut(s) 14, 119, 209, 229, 263, 302, 359, 375, 452
CviKI_1 RGCY 9 cut(s) 14, 119, 209, 229, 263, 302, 359, 375, 452
CviQI GTAC 2 cut(s) 276, 430
DpnI GATC 4 cut(s) 9, 62, 124, 459
DpnII GATC 4 cut(s) 7, 60, 122, 457
EaeI YGGCCR 3 cut(s) 12, 261, 373
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
EciI GGCGGA 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 340, 388
Eco47I GGWCC 2 cut(s) 219, 385
Eco57I CTGAAG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 340, 388
EcoT22I ATGCAT 2 cut(s) 113, 169
ErhI CCWWGG 2 cut(s) 340, 388
FaeI CATG 8 cut(s) 250, 310, 344, 392, 447, 511, 533, 560
FaqI GGGAC 2 cut(s) 36, 232
FatI CATG 8 cut(s) 246, 306, 340, 388, 443, 507, 529, 556
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 1 cut(s) 350
GluI GCNGC 1 cut(s) 411
GsaI CCCAGC 2 cut(s) 233, 456
GsuI CTGGAG 1 cut(s) 488
HaeIII GGCC 3 cut(s) 14, 263, 375
Hin1II CATG 8 cut(s) 250, 310, 344, 392, 447, 511, 533, 560
HinfI GANTC 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 45, 205
Hpy188III TCNNGA 1 cut(s) 488
HpyAV CCTTC 1 cut(s) 506
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 111, 167, 437
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 279, 299, 365, 449
Hsp92II CATG 8 cut(s) 250, 310, 344, 392, 447, 511, 533, 560
Kzo9I GATC 4 cut(s) 7, 60, 122, 457
LmnI GCTCC 2 cut(s) 395, 526
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 532
MalI GATC 4 cut(s) 9, 62, 124, 459
MbiI CCGCTC 1 cut(s) 398
MboI GATC 4 cut(s) 7, 60, 122, 457
MboII GAAGA 3 cut(s) 81, 111, 116
MfeI CAATTG 1 cut(s) 295
MflI RGATCY 2 cut(s) 7, 60
MhlI GDGCHC 1 cut(s) 349
MlsI TGGCCA 3 cut(s) 14, 263, 375
MluCI AATT 5 cut(s) 197, 295, 421, 519, 548
MluNI TGGCCA 3 cut(s) 14, 263, 375
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 3 cut(s) 209, 347, 386
Mox20I TGGCCA 3 cut(s) 14, 263, 375
Mph1103I ATGCAT 2 cut(s) 113, 169
MscI TGGCCA 3 cut(s) 14, 263, 375
MseI TTAA 4 cut(s) 77, 252, 477, 552
Msp20I TGGCCA 3 cut(s) 14, 263, 375
MspA1I CMGCKG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 467
MunI CAATTG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 1 cut(s) 467
MwoI GCNNNNNNNGC 5 cut(s) 137, 279, 299, 365, 449
NcoI CCATGG 2 cut(s) 340, 388
NdeII GATC 4 cut(s) 7, 60, 122, 457
NlaIII CATG 8 cut(s) 250, 310, 344, 392, 447, 511, 533, 560
NlaIV GGNNCC 1 cut(s) 220
NsiI ATGCAT 2 cut(s) 113, 169
NspI RCATGY 2 cut(s) 447, 533
PctI GAATGC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 465
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 465
PspFI CCCAGC 2 cut(s) 229, 452
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 219, 385
PsuI RGATCY 2 cut(s) 7, 60
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 277, 431
RsaNI GTAC 2 cut(s) 276, 430
SaqAI TTAA 4 cut(s) 77, 252, 477, 552
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 4 cut(s) 7, 60, 122, 457
Sau96I GGNCC 2 cut(s) 219, 385
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 1 cut(s) 349
SetI ASST 5 cut(s) 211, 231, 259, 333, 454
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 2 cut(s) 219, 385
Sse9I AATT 5 cut(s) 197, 295, 421, 519, 548
SsiI CCGC 3 cut(s) 66, 398, 516
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 2 cut(s) 340, 388
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 419, 481
TasI AATT 5 cut(s) 197, 295, 421, 519, 548
TatI WGTACW 2 cut(s) 275, 429
Tru1I TTAA 4 cut(s) 77, 252, 477, 552
Tru9I TTAA 4 cut(s) 77, 252, 477, 552
TseI GCWGC 1 cut(s) 410
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 219, 385
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 3 cut(s) 421, 519, 548
XceI RCATGY 2 cut(s) 447, 533
XspI CTAG 1 cut(s) 350
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 2 cut(s) 113, 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.