Rh2AG615300

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000317
Physical Location & Seq
Forward (+)
84025636 .. 84026039
404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG615300.1

Sequence Viewer

Length: 393 bp
ATGGTCACACGAAAATCGTCAATTTGGAGATTGTTATCTATAACTTCTCCAGAGTGGAAACAAGCAATTTTGGGGTGTTTGAGTGCAATAATTTTTGGAGCAGTTCAACCCCTGTACGGACTCACCATGGGTACGACATTATCAGTGCTTTTCTCAACAAATCATTATGATATCAAAGAGAGAATCAGGATTCTTGCCTTCTGTTTTCTTGGGTTGTCCCTTTTTGCATTGCTCATAAATATCATCCAACACTACAATTTCACATACATGGGGGAGTATTTGACCAATCGGATTAGAGAAACGTTGTTGTCAAAGATGCTCACTTTTGAAGTTGCATGGTTCGATGAGGTTCAAAATTCTAGCGGTGCCATTTGTGCTCACCAAGGACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

130

Amino Acids

14.83

Weight (kDa)

8.91

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 23 - 126 1.1e-12 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28345 AT3G28360 AT3G28380 AT3G28390 AT3G28415 AT3G28415
fragaria_vesca FvH4_1g06060 FvH4_3g21880 FvH4_4g25260 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49750 FvH4_6g49760
malus_domestica MD00G1221200.v1.1 MD02G1065200.v1.1 MD03G1211200.v1.1 MD09G1041500.v1.1 MD09G1041600.v1.1 MD09G1041900.v1.1 MD15G1196000.v1.1 MD16G1105600.v1.1 MD17G1042800.v1.1
prunus_persica Prupe.1G241000_v2.0.a1 Prupe.3G275900_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.3G276100_v2.0.a1 Prupe.4G204300_v2.0.a1 Prupe.7G220300_v2.0.a1
pyrus_communis pycom111g03260 pycom16g08980 pycom17g03840
rosa_chinensis RchiOBHm_Chr2g0091821 RchiOBHm_Chr2g0169781 RchiOBHm_Chr2g0169791 RchiOBHm_Chr2g0169801 RchiOBHm_Chr2g0169841 RchiOBHm_Chr2g0169851 RchiOBHm_Chr2g0169861 RchiOBHm_Chr4g0432501 RchiOBHm_Chr5g0037681 RchiOBHm_Chr5g0037691
rosa_laevigata RLG00000006836 RLG00000016254 RLG00000021903 RLG00000021904 RLG00000021905 RLG00000021906 RLG00000021907 RLG00000021908 RLG00000033801
rosa_multiflora Rmu_sc0001084.1_g000003 Rmu_sc0021402.1_g000003 Rmu_ssc0000389.1_g000016 Rmu_ssc0000389.1_g000019 Rmu_ssc0000389.1_g000024 Rmu_ssc0000389.1_g000027
rosa_roxburghii Rroxscaffold_1G00043250 Rroxscaffold_2G00081770 Rroxscaffold_2G00081780 Rroxscaffold_2G00081790 Rroxscaffold_2G00149710 Rroxscaffold_5G00373960
rosa_rugosa Rorug02G0021300 Rorug02G0543400.1 Rorug02G0543500.1 Rorug02G0543600.1 Rorug02G0543700.1 Rorug02G0543800 Rorug02G0543900 Rorug02G0544000 Rorug04G0259900.1 Rorug05G0166300 Rorug05G0166300
rosa_samantha Rh2AG065900 Rh2AG615300 Rh2AG615400 Rh2AG615500 Rh2AG615600 Rh2AG615700 Rh2AG615800 Rh2AG616000 Rh2AG616200 Rh2BG627600 Rh2BG627700 Rh2BG627800 Rh2BG627900 Rh2BG628000 Rh2BG628100 Rh2CG596900 Rh2CG597000 Rh2CG597100 Rh2CG597200 Rh2DG065000 Rh2DG638400 Rh2DG638600 Rh2DG638700 Rh2DG638800 Rh2DG638900 Rh2DG639000 Rh4AG314700 Rh4BG322400 Rh4CG337600 Rh4DG318300 Rh5AG255800 Rh5BG257900 Rh5CG291300
rosa_wichuraiana Rw0G002540 Rw2G005480 Rw2G051010 Rw2G051020 Rw2G051030 Rw2G051040 Rw4G027360 Rw5G023710 Rw5G024000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 365
AciI CCGC 1 cut(s) 363
AclI AACGTT 1 cut(s) 302
AcsI RAATTY 1 cut(s) 355
AfaI GTAC 2 cut(s) 116, 133
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 3 cut(s) 107, 329, 353
Alw21I GWGCWC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 355
AsuHPI GGTGA 2 cut(s) 115, 371
BanI GGYRCC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 379
BfaI CTAG 1 cut(s) 360
BmiI GGNNCC 1 cut(s) 367
BmsI GCATC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 126, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 126, 382
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 379
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 126, 382
BssT1I CCWWGG 2 cut(s) 126, 382
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 150
Csp6I GTAC 2 cut(s) 115, 132
CviAII CATG 3 cut(s) 127, 268, 336
CviQI GTAC 2 cut(s) 115, 132
Eco130I CCWWGG 2 cut(s) 126, 382
Eco32I GATATC 1 cut(s) 172
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 126, 382
ErhI CCWWGG 2 cut(s) 126, 382
FaeI CATG 3 cut(s) 130, 271, 339
FaiI YATR 7 cut(s) 41, 128, 168, 236, 265, 269, 337
FaqI GGGAC 1 cut(s) 202
FatI CATG 3 cut(s) 126, 267, 335
FokI GGATG 1 cut(s) 230
FspBI CTAG 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 33
Hin1II CATG 3 cut(s) 130, 271, 339
HinfI GANTC 3 cut(s) 120, 183, 190
HphI GGTGA 2 cut(s) 115, 371
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 2 cut(s) 50, 187
HpyAV CCTTC 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 3 cut(s) 86, 227, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 3 cut(s) 130, 271, 339
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 3 cut(s) 63, 125, 172
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 5 cut(s) 21, 66, 90, 256, 355
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 1 cut(s) 340
MslI CAYNNNNRTG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 374
NcoI CCATGG 1 cut(s) 126
NlaIII CATG 3 cut(s) 130, 271, 339
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 183, 190
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp1406I AACGTT 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 367
RsaI GTAC 2 cut(s) 116, 133
RsaNI GTAC 2 cut(s) 115, 132
RseI CAYNNNNRTG 1 cut(s) 266
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 379
SetI ASST 2 cut(s) 305, 351
SfaNI GCATC 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 5 cut(s) 21, 66, 90, 256, 355
SsiI CCGC 1 cut(s) 363
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 2 cut(s) 126, 382
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 342
TasI AATT 5 cut(s) 21, 66, 90, 256, 355
TfiI GAWTC 2 cut(s) 183, 190
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 150
XapI RAATTY 1 cut(s) 355
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.